Wall clock time and date at job start Mon Mar 30 2020 04:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99700 * 2 1 4 4 C 1.53000 * 109.47179 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46797 * 65.00031 * 4 3 2 6 6 C 1.46497 * 119.99875 * 269.99933 * 5 4 3 7 7 C 1.50702 * 109.47159 * 274.93667 * 6 5 4 8 8 H 1.08003 * 120.00416 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00269 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99338 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 120.00156 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47451 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47371 * 119.99789 * 11 9 7 14 14 H 1.48497 * 109.47160 * 239.99584 * 11 9 7 15 15 C 1.34777 * 119.99731 * 89.99946 * 5 4 3 16 16 O 1.21279 * 120.00209 * 4.88350 * 15 5 4 17 17 C 1.50702 * 119.99696 * 184.87976 * 15 5 4 18 18 C 1.53006 * 112.93794 * 291.69494 * 17 15 5 19 19 C 1.53931 * 113.73400 * 63.26152 * 17 15 5 20 20 N 1.47951 * 86.30314 * 138.12982 * 19 17 15 21 21 C 1.48188 * 90.67368 * 335.40876 * 20 19 17 22 22 H 1.08999 * 109.46935 * 60.00486 * 1 2 3 23 23 H 1.09003 * 109.47111 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47577 * 299.99955 * 1 2 3 25 25 H 1.08999 * 109.47376 * 59.99801 * 3 2 1 26 26 H 1.09000 * 109.47468 * 299.99567 * 3 2 1 27 27 H 1.08996 * 109.47602 * 305.00252 * 4 3 2 28 28 H 1.08999 * 109.47243 * 184.99590 * 4 3 2 29 29 H 1.08997 * 109.47269 * 34.93283 * 6 5 4 30 30 H 1.08996 * 109.46937 * 154.93631 * 6 5 4 31 31 H 0.97004 * 119.99501 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.46948 * 199.86762 * 18 17 15 33 33 H 1.09001 * 109.47055 * 319.87087 * 18 17 15 34 34 H 1.09002 * 109.47144 * 79.87522 * 18 17 15 35 35 H 1.09000 * 113.76047 * 252.50365 * 19 17 15 36 36 H 1.09006 * 113.76054 * 23.75299 * 19 17 15 37 37 H 1.00904 * 111.00288 * 88.26308 * 20 19 17 38 38 H 1.08995 * 113.65790 * 270.26966 * 21 20 19 39 39 H 1.09002 * 113.91964 * 138.95364 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.1062 -0.8924 -1.3403 7 6 5.4604 -1.3087 -0.8266 8 1 6.1553 -0.5629 -0.4696 9 6 5.8129 -2.6416 -0.8132 10 7 4.9671 -3.5497 -1.2484 11 14 7.4917 -3.1574 -0.1771 12 1 8.2502 -1.9544 0.2506 13 1 7.3228 -4.0736 0.9793 14 1 8.2371 -3.8543 -1.2559 15 6 4.2632 1.3331 -2.3201 16 8 4.2417 2.5416 -2.2210 17 6 4.6104 0.6911 -3.6386 18 6 5.9546 -0.0391 -3.6106 19 6 3.4654 -0.1416 -4.2428 20 7 3.8431 0.4578 -5.5416 21 6 4.4379 1.6255 -4.8496 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.6885 1.8464 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 3.8508 0.5686 0.8426 28 1 3.9783 2.1767 0.0901 29 1 3.3289 -1.3640 -0.7391 30 1 4.0006 -1.2034 -2.3796 31 1 5.2149 -4.4875 -1.2387 32 1 6.3176 -0.1712 -4.6299 33 1 6.6753 0.5481 -3.0415 34 1 5.8286 -1.0145 -3.1406 35 1 3.6305 -1.2178 -4.1912 36 1 2.4759 0.1539 -3.8938 37 1 4.5544 -0.0916 -6.0003 38 1 3.7328 2.4390 -4.6797 39 1 5.3800 1.9626 -5.2819 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399145621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:04 Heat of formation + Delta-G solvation = -44.234516 kcal Electronic energy + Delta-G solvation = -20725.990943 eV Core-core repulsion = 17670.169340 eV Total energy + Delta-G solvation = -3055.821603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40173 -38.07072 -37.09655 -34.94258 -32.65097 -30.63195 -28.99944 -27.12112 -26.07699 -25.65091 -24.88398 -22.92597 -22.59908 -19.90841 -17.83084 -16.58457 -16.47136 -15.99066 -15.94180 -15.62082 -15.16054 -14.66626 -14.44493 -14.03917 -13.35540 -13.17894 -12.85039 -12.49363 -12.12752 -11.98497 -11.67247 -11.58329 -11.46158 -11.34949 -11.23874 -11.09151 -10.90981 -10.84601 -10.52325 -10.13308 -9.97916 -9.68000 -9.38415 -9.11485 -8.54502 -8.11595 -7.67029 -6.15398 -4.20479 3.20984 3.30030 3.32200 3.38752 3.91320 4.16347 4.33867 4.36527 4.78883 5.11031 5.17600 5.39174 5.42978 5.52311 5.64969 5.66162 5.71365 5.74214 5.86333 5.96099 6.01039 6.08327 6.12486 6.22166 6.26776 6.39005 6.45954 6.51156 6.86502 7.02755 7.38269 7.49024 7.56829 7.62230 7.81629 8.11809 8.41285 8.82034 9.02974 9.44605 10.90802 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.013806 B = 0.010013 C = 0.007130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.587475 B = 2795.734746 C = 3926.243199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.374 6.374 3 C 0.049 3.951 4 C 0.119 3.881 5 N -0.583 5.583 6 C 0.231 3.769 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.065 3.935 10 N -0.889 5.889 11 Si 0.890 3.110 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.527 3.473 16 O -0.580 6.580 17 C -0.136 4.136 18 C -0.133 4.133 19 C 0.038 3.962 20 N -0.660 5.660 21 C 0.041 3.959 22 H 0.035 0.965 23 H 0.083 0.917 24 H 0.034 0.966 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.335 0.665 38 H 0.099 0.901 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.305 5.326 -1.798 7.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.029 4.029 4 C -0.005 4.005 5 N -0.312 5.312 6 C 0.111 3.889 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.138 4.138 10 N -0.527 5.527 11 Si 0.718 3.282 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.315 3.685 16 O -0.461 6.461 17 C -0.141 4.141 18 C -0.190 4.190 19 C -0.092 4.092 20 N -0.287 5.287 21 C -0.089 4.089 22 H 0.053 0.947 23 H 0.101 0.899 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.149 0.851 38 H 0.117 0.883 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.954 5.806 -2.149 7.929 hybrid contribution 1.586 -0.569 1.029 1.975 sum -3.368 5.237 -1.120 6.326 Atomic orbital electron populations 1.22682 0.82223 1.02398 0.99144 1.88068 1.18601 1.27365 1.95184 1.23020 0.95334 0.84931 0.99611 1.21328 0.90943 0.99615 0.88570 1.48136 1.63230 1.10073 1.09726 1.19700 0.97316 0.72744 0.99093 1.21525 1.00456 0.92284 1.42634 0.92313 1.24894 0.97188 0.96401 0.95296 1.69940 1.35083 1.01305 1.46382 0.86563 0.84201 0.78702 0.78754 1.19760 1.20921 1.20914 1.20330 0.76178 0.86507 0.85519 1.90563 1.55659 1.14665 1.85261 1.23664 0.99010 0.97680 0.93710 1.21824 0.92845 1.03392 1.00908 1.23732 0.97641 0.99469 0.88357 1.65220 1.36589 1.07125 1.19763 1.23650 0.99527 0.94782 0.90954 0.94666 0.89852 0.94756 0.93287 0.93594 0.89441 0.89581 0.93531 0.93612 0.92682 0.93534 0.92317 0.87369 0.89323 0.89005 0.85112 0.88281 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.69 9.46 -35.23 -0.33 -7.02 16 3 C 0.05 0.81 6.28 37.16 0.23 1.04 16 4 C 0.12 2.24 5.87 -4.04 -0.02 2.21 16 5 N -0.58 -12.26 2.42 -175.06 -0.42 -12.68 16 6 C 0.23 5.38 4.43 -5.19 -0.02 5.36 16 7 C -0.53 -13.34 7.26 -34.44 -0.25 -13.59 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -23.85 13.29 55.43 0.74 -23.12 16 11 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 15 C 0.53 11.01 6.62 -10.98 -0.07 10.94 16 16 O -0.58 -13.06 15.78 5.56 0.09 -12.97 16 17 C -0.14 -2.49 0.72 -154.72 -0.11 -2.60 16 18 C -0.13 -2.42 8.22 37.16 0.31 -2.12 16 19 C 0.04 0.65 6.50 -2.77 -0.02 0.64 16 20 N -0.66 -10.29 8.57 -115.99 -0.99 -11.28 16 21 C 0.04 0.67 7.63 -2.64 -0.02 0.65 16 22 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.09 1.67 8.07 -51.93 -0.42 1.25 16 28 H 0.09 1.56 7.36 -51.93 -0.38 1.18 16 29 H 0.05 1.20 7.04 -51.93 -0.37 0.83 16 30 H 0.05 1.07 3.60 -51.93 -0.19 0.89 16 31 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.05 0.71 7.46 -51.93 -0.39 0.33 16 33 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 34 H 0.11 2.28 5.14 -51.93 -0.27 2.02 16 35 H 0.09 1.58 7.13 -51.93 -0.37 1.21 16 36 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 37 H 0.33 4.67 8.26 -39.29 -0.32 4.35 16 38 H 0.10 1.70 7.76 -51.93 -0.40 1.30 16 39 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 313.28 15.07 4.72 4.72 Total: -1.00 -28.49 313.28 -6.22 -34.71 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.02 Total: 6.78 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 1.03 Total: 5.65 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.68 Total: -47.08 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.25 Total: -19.99 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.49 -6.22 -34.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399145621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.525 kcal (2) G-P(sol) polarization free energy of solvation -28.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds