Wall clock time and date at job start Mon Mar 30 2020 04:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99865 * 2 1 4 4 H 1.48503 * 109.46884 * 239.99872 * 3 2 1 5 5 H 1.48497 * 109.47411 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47080 * 120.00246 * 3 2 1 7 7 C 1.37877 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00037 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47105 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46733 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47587 * 54.99949 * 12 11 10 14 14 N 1.46899 * 109.47159 * 294.99884 * 12 11 10 15 15 C 1.50703 * 109.46838 * 174.99828 * 12 11 10 16 16 O 1.21280 * 119.99961 * 99.99992 * 15 12 11 17 17 N 1.34773 * 119.99874 * 279.99753 * 15 12 11 18 18 C 1.47164 * 120.94471 * 359.93784 * 17 15 12 19 19 C 1.53300 * 108.37481 * 230.51450 * 18 17 15 20 20 O 1.42961 * 109.26618 * 307.77372 * 19 18 17 21 21 C 1.42967 * 114.16831 * 62.55217 * 20 19 18 22 22 C 1.47157 * 120.97890 * 180.02562 * 17 15 12 23 23 H 0.96998 * 120.00334 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47286 * 60.00462 * 9 7 2 25 25 H 1.09003 * 109.47332 * 300.00016 * 9 7 2 26 26 H 1.09000 * 109.46609 * 60.00032 * 10 9 7 27 27 H 1.09003 * 109.46951 * 300.00234 * 10 9 7 28 28 H 1.08996 * 109.46893 * 60.00035 * 11 10 9 29 29 H 1.08998 * 109.46915 * 300.00172 * 11 10 9 30 30 H 1.00899 * 110.99945 * 176.05197 * 14 12 11 31 31 H 1.00905 * 110.99750 * 300.00050 * 14 12 11 32 32 H 1.08996 * 109.64217 * 110.82114 * 18 17 15 33 33 H 1.08999 * 109.72598 * 350.25766 * 18 17 15 34 34 H 1.09002 * 109.51290 * 187.82368 * 19 18 17 35 35 H 1.08997 * 109.51158 * 67.72466 * 19 18 17 36 36 H 1.09005 * 109.50496 * 57.34540 * 21 20 19 37 37 H 1.08995 * 109.51193 * 177.44508 * 21 20 19 38 38 H 1.09004 * 109.67827 * 9.71565 * 22 17 15 39 39 H 1.09000 * 109.68235 * 249.15947 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4803 -4.9871 0.0033 12 6 2.4746 -6.1500 0.0050 13 1 3.1581 -6.0425 0.8472 14 7 3.2385 -6.1429 -1.2497 15 6 1.7251 -7.4515 0.1294 16 8 1.5135 -8.1260 -0.8561 17 7 1.2900 -7.8659 1.3358 18 6 1.5365 -7.0646 2.5453 19 6 2.1452 -7.9788 3.6148 20 8 1.3177 -9.1335 3.7749 21 6 1.2136 -9.9460 2.6031 22 6 0.5565 -9.1332 1.4821 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6247 -2.5563 0.8920 26 1 2.8719 -3.6035 0.8927 27 1 2.8720 -3.6051 -0.8873 28 1 0.8540 -5.0454 -0.8869 29 1 0.8533 -5.0443 0.8931 30 1 3.9462 -6.8621 -1.2462 31 1 2.6268 -6.2414 -2.0461 32 1 0.5959 -6.6505 2.9084 33 1 2.2301 -6.2557 2.3157 34 1 2.2069 -7.4412 4.5610 35 1 3.1439 -8.2865 3.3052 36 1 2.2088 -10.2608 2.2889 37 1 0.6060 -10.8240 2.8217 38 1 0.6014 -9.6933 0.5480 39 1 -0.4829 -8.9284 1.7385 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594424332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:48 Heat of formation + Delta-G solvation = -92.814538 kcal Electronic energy + Delta-G solvation = -19481.418341 eV Core-core repulsion = 16423.490151 eV Total energy + Delta-G solvation = -3057.928191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.64255 -38.67211 -35.83518 -34.97994 -33.37872 -31.75158 -31.36668 -28.61526 -27.63528 -25.30726 -24.17525 -22.91199 -21.45007 -20.04546 -19.23636 -17.65638 -16.78037 -16.43178 -16.08817 -15.98433 -15.40790 -15.37728 -14.93315 -14.47031 -14.44325 -13.94549 -13.38406 -13.05385 -12.77895 -12.42855 -12.11174 -11.82278 -11.67946 -11.48587 -11.15125 -11.04340 -10.74227 -10.64532 -10.49954 -10.43132 -10.18695 -9.62419 -9.24225 -9.06849 -8.80865 -8.60309 -8.29826 -5.95551 -3.97464 2.46493 2.68276 3.36220 3.40460 3.43193 3.47665 4.31166 4.42255 4.50117 4.60536 4.68792 4.76515 4.83920 4.92268 5.07575 5.22253 5.26732 5.34499 5.40191 5.44736 5.47918 5.63284 5.88971 6.06492 6.17272 6.40363 6.73326 6.78925 6.98338 7.00813 7.19461 7.22957 7.47082 7.73585 7.88906 7.97756 8.05572 8.48661 9.09924 9.66344 11.15836 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.030201 B = 0.004105 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.894506 B = 6819.480359 C = 7259.269694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.099 4.099 11 C -0.105 4.105 12 C 0.077 3.923 13 H 0.101 0.899 14 N -0.811 5.811 15 C 0.486 3.514 16 O -0.549 6.549 17 N -0.615 5.615 18 C 0.067 3.933 19 C 0.047 3.953 20 O -0.380 6.380 21 C 0.050 3.950 22 C 0.073 3.927 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.012 0.988 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.338 0.662 31 H 0.351 0.649 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 -18.933 6.335 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.137 4.137 11 C -0.143 4.143 12 C -0.038 4.038 13 H 0.118 0.882 14 N -0.339 5.339 15 C 0.274 3.726 16 O -0.427 6.427 17 N -0.350 5.350 18 C -0.056 4.056 19 C -0.031 4.031 20 O -0.298 6.298 21 C -0.028 4.028 22 C -0.050 4.050 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.030 0.970 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.149 0.851 31 H 0.165 0.835 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.712 -18.459 6.159 19.810 hybrid contribution 0.053 0.011 -0.291 0.296 sum 3.765 -18.448 5.869 19.722 Atomic orbital electron populations 1.69958 1.06059 1.26600 1.51091 1.25027 0.94821 0.99205 0.95450 0.86675 0.79580 0.83229 0.78609 1.20245 1.21376 1.20283 1.21235 0.93028 0.91091 1.50246 0.92708 1.19117 0.94083 0.91597 0.96948 1.21543 0.98767 0.92228 1.01163 1.21679 0.96559 0.93956 1.02103 1.21807 0.95886 0.90905 0.95233 0.88165 1.59064 1.17331 1.54193 1.03295 1.22615 0.78949 0.88965 0.82092 1.90656 1.58029 1.57444 1.36557 1.48274 1.56676 1.22331 1.07716 1.22602 1.03092 0.94724 0.85177 1.23025 0.93352 0.86850 0.99833 1.87974 1.69886 1.37225 1.34723 1.22964 1.00707 0.93543 0.85587 1.22276 0.96234 0.85902 1.00604 0.93040 0.96783 0.96959 0.93693 0.91790 0.91854 0.91875 0.85051 0.83515 0.89791 0.87765 0.87201 0.92602 0.92779 0.87671 0.88284 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -1.99 5.04 -26.73 -0.13 -2.13 16 11 C -0.10 -1.73 4.65 -26.73 -0.12 -1.85 16 12 C 0.08 1.06 2.31 -68.86 -0.16 0.90 16 13 H 0.10 1.21 6.51 -51.93 -0.34 0.87 16 14 N -0.81 -11.08 8.44 -5.65 -0.05 -11.13 16 15 C 0.49 6.81 6.95 -10.99 -0.08 6.73 16 16 O -0.55 -9.20 15.72 5.56 0.09 -9.11 16 17 N -0.61 -7.20 3.02 -172.28 -0.52 -7.72 16 18 C 0.07 0.65 5.76 -3.52 -0.02 0.63 16 19 C 0.05 0.39 6.98 37.31 0.26 0.65 16 20 O -0.38 -3.80 10.74 -35.23 -0.38 -4.18 16 21 C 0.05 0.42 6.98 37.29 0.26 0.68 16 22 C 0.07 0.75 6.64 -3.55 -0.02 0.72 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 1.33 7.75 -51.93 -0.40 0.93 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 0.99 7.27 -51.93 -0.38 0.62 16 30 H 0.34 3.98 9.06 -39.29 -0.36 3.62 16 31 H 0.35 5.01 8.58 -39.29 -0.34 4.67 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.96 5.38 -51.93 -0.28 0.68 16 34 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 1.09 7.08 -51.93 -0.37 0.72 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 316.03 15.07 4.76 4.76 Total: -1.00 -33.08 316.03 -7.18 -40.25 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.23 Total: 3.63 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.57 Total: -6.82 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.17 Total: -45.28 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.29 Total: -13.29 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.08 -7.18 -40.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594424332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.563 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds