Wall clock time and date at job start Mon Mar 30 2020 04:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99594 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46972 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47380 * 64.99939 * 12 11 10 14 14 C 1.47919 * 111.00048 * 66.04278 * 13 12 11 15 15 C 1.52578 * 111.68220 * 182.99577 * 14 13 12 16 16 O 1.43981 * 111.80500 * 49.78066 * 15 14 13 17 17 C 1.41450 * 110.56278 * 304.14776 * 16 15 14 18 18 H 1.09004 * 110.35663 * 305.05755 * 17 16 15 19 19 C 1.52963 * 117.57608 * 176.30710 * 17 16 15 20 20 N 1.49050 * 103.49636 * 204.25039 * 19 17 16 21 21 C 1.48631 * 108.26833 * 24.32928 * 20 19 17 22 22 C 1.45366 * 110.99601 * 305.98838 * 13 12 11 23 23 H 1.08998 * 109.85992 * 67.17376 * 22 13 12 24 24 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 26 26 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 27 27 H 1.09005 * 109.46851 * 299.99626 * 11 10 9 28 28 H 1.08995 * 109.47252 * 60.00069 * 11 10 9 29 29 H 1.09000 * 109.47310 * 184.99675 * 12 11 10 30 30 H 1.08994 * 109.47524 * 304.99888 * 12 11 10 31 31 H 1.08998 * 109.03812 * 303.56143 * 14 13 12 32 32 H 1.08994 * 109.03296 * 62.50598 * 14 13 12 33 33 H 1.08997 * 109.01410 * 170.38144 * 15 14 13 34 34 H 1.08998 * 109.01148 * 289.18234 * 15 14 13 35 35 H 1.08990 * 110.61886 * 322.75975 * 19 17 16 36 36 H 1.09007 * 110.61273 * 85.75394 * 19 17 16 37 37 H 1.00900 * 111.00227 * 262.25649 * 20 19 17 38 38 H 1.09003 * 110.16224 * 244.03171 * 21 20 19 39 39 H 1.08995 * 110.16141 * 122.25249 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0017 11 6 1.5653 -4.8754 0.0013 12 6 2.6483 -5.9561 0.0020 13 7 3.4075 -5.8877 1.2578 14 6 2.5547 -6.2433 2.4128 15 6 3.3077 -6.1065 3.7328 16 8 3.9711 -4.8332 3.8405 17 6 4.8372 -4.6297 2.7408 18 1 5.5392 -5.4589 2.6524 19 6 5.5608 -3.2851 2.6487 20 7 5.8585 -3.1493 1.1945 21 6 4.8781 -3.9724 0.4393 22 6 3.9270 -4.5484 1.4801 23 1 3.1038 -3.8572 1.6610 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6248 -2.5571 -0.8896 27 1 0.9442 -4.9823 0.8906 28 1 0.9462 -4.9826 -0.8894 29 1 2.1824 -6.9374 -0.0879 30 1 3.3224 -5.7955 -0.8393 31 1 1.6859 -5.5853 2.4293 32 1 2.2179 -7.2740 2.3021 33 1 2.6017 -6.2099 4.5568 34 1 4.0506 -6.9010 3.8018 35 1 4.9121 -2.4764 2.9849 36 1 6.4833 -3.3052 3.2291 37 1 6.8043 -3.4358 0.9907 38 1 5.3904 -4.7773 -0.0878 39 1 4.3296 -3.3494 -0.2670 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686538368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:55 Heat of formation + Delta-G solvation = -91.415686 kcal Electronic energy + Delta-G solvation = -20918.328228 eV Core-core repulsion = 17860.460697 eV Total energy + Delta-G solvation = -3057.867532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.73006 -39.02620 -37.59865 -36.82459 -35.11079 -31.48232 -30.71099 -29.39252 -28.76911 -26.91172 -24.76179 -24.13458 -23.35556 -22.31812 -20.69598 -19.22334 -17.96519 -17.62340 -17.44695 -17.42314 -16.68846 -16.07200 -15.82953 -15.64316 -15.46785 -15.07118 -14.56460 -14.29513 -14.02658 -13.80150 -13.50626 -13.33627 -13.24348 -12.96636 -12.58102 -12.47660 -12.32713 -12.03219 -12.02915 -11.93246 -11.56710 -10.85423 -10.83446 -10.54891 -10.32944 -9.50588 -9.40379 -8.82824 -6.52714 1.50432 1.59336 1.80254 2.45851 2.59471 2.62834 3.03316 3.07926 3.28608 3.63371 3.75477 3.92165 4.00401 4.05645 4.12841 4.21289 4.29985 4.35037 4.40291 4.45582 4.46395 4.55936 4.61602 4.75648 4.80173 4.82914 4.89685 4.96216 5.15759 5.27384 5.60788 5.67110 5.82519 5.90135 5.95174 6.09156 6.35350 6.53961 6.58686 7.27097 8.57775 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.021337 B = 0.007436 C = 0.006479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.952380 B = 3764.734593 C = 4320.496106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.030 4.030 3 Si 1.123 2.877 4 H -0.277 1.277 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.606 4.606 8 H 0.056 0.944 9 C 0.200 3.800 10 O -0.374 6.374 11 C 0.010 3.990 12 C 0.060 3.940 13 N -0.502 5.502 14 C 0.006 3.994 15 C 0.059 3.941 16 O -0.391 6.391 17 C 0.056 3.944 18 H 0.084 0.916 19 C 0.062 3.938 20 N -0.681 5.681 21 C 0.074 3.926 22 C 0.029 3.971 23 H 0.048 0.952 24 H 0.253 0.747 25 H -0.032 1.032 26 H -0.023 1.023 27 H 0.033 0.967 28 H 0.048 0.952 29 H 0.121 0.879 30 H 0.086 0.914 31 H 0.021 0.979 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.353 0.647 38 H 0.068 0.932 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.880 -15.116 4.544 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.227 4.227 3 Si 0.943 3.057 4 H -0.202 1.202 5 H -0.196 1.196 6 H -0.191 1.191 7 C -0.644 4.644 8 H 0.074 0.926 9 C 0.124 3.876 10 O -0.294 6.294 11 C -0.068 4.068 12 C -0.068 4.068 13 N -0.226 5.226 14 C -0.121 4.121 15 C -0.017 4.017 16 O -0.309 6.309 17 C -0.004 4.004 18 H 0.102 0.898 19 C -0.067 4.067 20 N -0.312 5.312 21 C -0.055 4.055 22 C -0.082 4.082 23 H 0.065 0.935 24 H 0.062 0.938 25 H -0.015 1.015 26 H -0.005 1.005 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.139 0.861 30 H 0.104 0.896 31 H 0.040 0.960 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.170 0.830 38 H 0.086 0.914 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.929 -13.077 4.568 17.043 hybrid contribution -1.332 -2.123 -0.112 2.509 sum 8.598 -15.200 4.456 18.023 Atomic orbital electron populations 1.70940 1.07796 1.29566 1.48587 1.27491 0.96418 1.06530 0.92273 0.82877 0.74058 0.70523 0.78292 1.20210 1.19566 1.19070 1.22168 0.95336 0.91565 1.55285 0.92556 1.19853 0.89305 0.86500 0.91899 1.88051 1.33309 1.13482 1.94519 1.23351 0.97941 0.85908 0.99632 1.22435 0.94086 0.97257 0.93014 1.63160 1.33431 1.23578 1.02392 1.23025 0.95051 1.02803 0.91256 1.22880 0.96994 0.85038 0.96816 1.88017 1.59052 1.39063 1.44804 1.23516 0.92257 0.99165 0.85455 0.89784 1.22475 1.00447 0.94125 0.89695 1.62380 1.07130 1.57022 1.04672 1.22006 0.92901 0.95063 0.95566 1.23052 0.98135 0.90254 0.96733 0.93459 0.93812 1.01477 1.00500 0.94880 0.93337 0.86141 0.89587 0.96049 0.86315 0.86762 0.90429 0.92577 0.87574 0.82961 0.91405 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.11 13.65 21.45 0.29 -58.82 16 2 C -0.03 -1.81 5.46 84.65 0.46 -1.34 16 3 Si 1.12 52.51 29.90 68.60 2.05 54.56 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.61 -36.90 9.43 25.60 0.24 -36.66 16 8 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 9 C 0.20 11.27 5.00 71.24 0.36 11.63 16 10 O -0.37 -17.66 4.96 -148.98 -0.74 -18.40 16 11 C 0.01 0.36 5.66 71.98 0.41 0.77 16 12 C 0.06 1.63 5.74 86.30 0.50 2.13 16 13 N -0.50 -14.13 5.05 -868.71 -4.39 -18.52 16 14 C 0.01 0.16 5.33 85.97 0.46 0.62 16 15 C 0.06 1.38 6.84 71.84 0.49 1.87 16 16 O -0.39 -12.40 10.91 -148.62 -1.62 -14.02 16 17 C 0.06 1.69 3.22 31.52 0.10 1.79 16 18 H 0.08 2.20 8.10 -2.38 -0.02 2.18 16 19 C 0.06 1.88 7.49 85.87 0.64 2.53 16 20 N -0.68 -21.36 7.48 -505.73 -3.78 -25.15 16 21 C 0.07 2.53 6.38 85.74 0.55 3.07 16 22 C 0.03 0.99 1.07 45.91 0.05 1.04 16 23 H 0.05 2.19 5.70 -2.39 -0.01 2.18 16 24 H 0.25 16.22 7.22 -92.70 -0.67 15.55 16 25 H -0.03 -1.94 8.01 -2.39 -0.02 -1.96 16 26 H -0.02 -1.32 8.01 -2.39 -0.02 -1.34 16 27 H 0.03 1.22 6.27 -2.38 -0.01 1.21 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.12 2.39 8.12 -2.39 -0.02 2.37 16 30 H 0.09 2.36 7.75 -2.39 -0.02 2.34 16 31 H 0.02 0.65 6.21 -2.39 -0.01 0.64 16 32 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.35 8.44 8.93 -89.69 -0.80 7.64 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 2.73 6.49 -2.39 -0.02 2.71 16 Total: -1.00 -72.52 300.49 -3.60 -76.12 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.34 Total: 16.79 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 4.25 Total: -12.56 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -7.88 Total: -102.49 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -2.36 Total: -32.42 kcal Atomic # 14 Polarization: 52.51 SS G_CDS: 2.05 Total: 54.56 kcal Total: -72.52 -3.60 -76.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686538368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.298 kcal (2) G-P(sol) polarization free energy of solvation -72.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds