Wall clock time and date at job start Mon Mar 30 2020 04:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00026 * 2 1 4 4 H 1.48494 * 109.46853 * 269.99697 * 3 2 1 5 5 H 1.48502 * 109.46953 * 29.99664 * 3 2 1 6 6 H 1.48497 * 109.47001 * 149.99716 * 3 2 1 7 7 C 1.37880 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99917 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99914 * 179.97438 * 7 2 1 10 10 O 1.42904 * 109.47030 * 180.02562 * 9 7 2 11 11 C 1.42894 * 114.00100 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47462 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46882 * 64.99877 * 12 11 10 14 14 C 1.46899 * 110.99737 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.63246 * 322.97622 * 14 13 12 16 16 C 1.53054 * 109.63360 * 83.37495 * 14 13 12 17 17 C 1.51785 * 110.74532 * 34.78509 * 16 14 13 18 18 C 1.51775 * 113.81384 * 66.80813 * 17 16 14 19 19 C 1.52987 * 110.88371 * 292.99856 * 18 17 16 20 20 N 1.47200 * 108.66558 * 86.46093 * 19 18 17 21 21 C 1.33365 * 120.42835 * 288.04823 * 20 19 18 22 22 O 1.21283 * 119.89352 * 180.28314 * 21 20 19 23 23 H 0.96997 * 120.00132 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47065 * 60.00897 * 9 7 2 25 25 H 1.08995 * 109.47214 * 300.00799 * 9 7 2 26 26 H 1.09004 * 109.47091 * 59.99564 * 11 10 9 27 27 H 1.09003 * 109.47232 * 300.00576 * 11 10 9 28 28 H 1.08992 * 109.47300 * 185.00242 * 12 11 10 29 29 H 1.08996 * 109.47059 * 305.00025 * 12 11 10 30 30 H 1.00904 * 110.99967 * 56.04752 * 13 12 11 31 31 H 1.08999 * 109.22269 * 155.11438 * 16 14 13 32 32 H 1.09002 * 109.22613 * 274.49794 * 16 14 13 33 33 H 1.09003 * 108.61706 * 187.92848 * 17 16 14 34 34 H 1.09003 * 108.61958 * 305.82690 * 17 16 14 35 35 H 1.08999 * 109.19381 * 53.35928 * 18 17 16 36 36 H 1.09003 * 109.19939 * 172.68509 * 18 17 16 37 37 H 1.08991 * 109.61086 * 206.21957 * 19 18 17 38 38 H 1.09000 * 109.60280 * 326.71488 * 19 18 17 39 39 H 0.96997 * 119.78075 * 108.04382 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9879 -2.5414 0.0001 11 6 5.4124 -2.6542 0.0001 12 6 5.8070 -4.1324 -0.0004 13 7 5.3678 -4.7560 -1.2559 14 6 5.7299 -6.1792 -1.2917 15 1 6.7017 -6.3218 -0.8190 16 6 4.6716 -6.9980 -0.5487 17 6 3.2915 -6.3974 -0.7451 18 6 2.7827 -6.4846 -2.1724 19 6 3.6181 -5.6044 -3.1039 20 7 4.7823 -6.3783 -3.5648 21 6 5.7837 -6.6545 -2.7284 22 8 6.7407 -7.2885 -3.1198 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6797 0.8895 25 1 3.8745 -0.6807 -0.8904 26 1 5.8152 -2.1705 0.8901 27 1 5.8152 -2.1706 -0.8898 28 1 6.8897 -4.2195 0.0892 29 1 5.3311 -4.6358 0.8412 30 1 5.7444 -4.2665 -2.0539 31 1 4.6759 -8.0195 -0.9290 32 1 4.9089 -7.0103 0.5151 33 1 2.5897 -6.9174 -0.0931 34 1 3.3240 -5.3477 -0.4529 35 1 2.8395 -7.5193 -2.5105 36 1 1.7445 -6.1540 -2.2036 37 1 3.0158 -5.3043 -3.9613 38 1 3.9572 -4.7199 -2.5647 39 1 4.8213 -6.6894 -4.4827 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687773570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:02 Heat of formation + Delta-G solvation = -78.582197 kcal Electronic energy + Delta-G solvation = -19988.776382 eV Core-core repulsion = 16931.465352 eV Total energy + Delta-G solvation = -3057.311030 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.47602 -37.51379 -36.66068 -35.09616 -33.16857 -32.58196 -30.63522 -28.61426 -27.28434 -25.16591 -23.93102 -21.97850 -21.76609 -20.15859 -19.51226 -17.40838 -17.06426 -16.74391 -15.90956 -15.37473 -15.18453 -14.92596 -14.32818 -14.25344 -13.78409 -13.65484 -13.43293 -13.00948 -12.88657 -12.55567 -12.33994 -12.02680 -11.76212 -11.41992 -11.02731 -10.82790 -10.75322 -10.62299 -10.50331 -10.31188 -9.88648 -9.77523 -9.19272 -9.05562 -8.86597 -8.48561 -8.32242 -6.13092 -4.11698 2.54451 3.22572 3.30295 3.30898 3.33600 4.02392 4.33719 4.40745 4.59631 4.91973 5.00811 5.10290 5.18542 5.25337 5.37614 5.41433 5.47306 5.65706 5.74176 5.77902 5.87600 5.89109 6.10272 6.12283 6.26696 6.29962 6.37555 6.58418 6.74409 6.85235 6.89755 6.98322 7.22381 7.30141 7.58670 8.01152 8.20926 8.65383 8.99356 9.46724 10.99864 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.028422 B = 0.005107 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.924116 B = 5481.211172 C = 5828.011556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.084 0.916 9 C 0.168 3.832 10 O -0.365 6.365 11 C 0.060 3.940 12 C 0.060 3.940 13 N -0.658 5.658 14 C 0.071 3.929 15 H 0.074 0.926 16 C -0.101 4.101 17 C -0.119 4.119 18 C -0.126 4.126 19 C 0.086 3.914 20 N -0.713 5.713 21 C 0.520 3.480 22 O -0.564 6.564 23 H 0.266 0.734 24 H 0.000 1.000 25 H -0.004 1.004 26 H 0.044 0.956 27 H 0.036 0.964 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.342 0.658 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.129 0.871 39 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.846 -10.459 -3.336 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.102 0.898 9 C 0.092 3.908 10 O -0.284 6.284 11 C -0.018 4.018 12 C -0.068 4.068 13 N -0.292 5.292 14 C -0.042 4.042 15 H 0.092 0.908 16 C -0.140 4.140 17 C -0.157 4.157 18 C -0.165 4.165 19 C -0.037 4.037 20 N -0.363 5.363 21 C 0.305 3.695 22 O -0.443 6.443 23 H 0.076 0.924 24 H 0.017 0.983 25 H 0.014 0.986 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.161 0.839 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.146 0.854 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 9.393 -10.862 -3.094 14.690 hybrid contribution 1.402 1.114 -0.530 1.867 sum 10.795 -9.749 -3.624 14.990 Atomic orbital electron populations 1.69869 1.06034 1.27029 1.50474 1.24759 0.94761 0.98666 0.94749 0.86882 0.80339 0.83976 0.78702 1.20016 1.20863 1.19211 1.20870 0.88223 0.95249 1.50947 0.89834 1.20589 0.96215 0.79840 0.94116 1.87984 1.16640 1.28823 1.94917 1.22312 0.85835 0.94441 0.99189 1.22103 0.96935 0.94782 0.92991 1.60761 1.62917 1.00533 1.04994 1.22000 0.99354 0.90374 0.92472 0.90771 1.21294 0.95098 0.97749 0.99836 1.21019 0.93992 1.04668 0.96021 1.21609 0.99908 0.99130 0.95841 1.22446 0.85795 0.96622 0.98879 1.45982 1.20952 1.55584 1.13825 1.20510 0.81696 0.79255 0.88062 1.90738 1.33777 1.41761 1.77980 0.92411 0.98256 0.98602 0.93821 0.94564 0.94141 0.89650 0.83898 0.92292 0.91254 0.93039 0.87975 0.92991 0.90724 0.90627 0.85400 0.76986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 20.83 27.47 -169.99 -4.67 16.16 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.51 -14.62 9.99 -34.44 -0.34 -14.96 16 8 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.17 4.02 4.76 36.01 0.17 4.19 16 10 O -0.36 -7.64 10.27 -35.23 -0.36 -8.00 16 11 C 0.06 0.93 6.22 37.16 0.23 1.16 16 12 C 0.06 0.74 5.74 -3.82 -0.02 0.72 16 13 N -0.66 -7.98 2.07 -107.54 -0.22 -8.20 16 14 C 0.07 0.84 2.77 -68.48 -0.19 0.65 16 15 H 0.07 0.87 7.84 -51.93 -0.41 0.46 16 16 C -0.10 -1.16 5.28 -27.32 -0.14 -1.30 16 17 C -0.12 -1.49 5.20 -27.97 -0.15 -1.64 16 18 C -0.13 -1.46 5.73 -27.36 -0.16 -1.62 16 19 C 0.09 0.96 6.42 -3.67 -0.02 0.94 16 20 N -0.71 -7.97 5.27 -59.90 -0.32 -8.28 16 21 C 0.52 6.92 6.48 -11.25 -0.07 6.85 16 22 O -0.56 -9.51 17.92 5.56 0.10 -9.41 16 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.00 -0.01 7.20 -51.93 -0.37 -0.38 16 25 H 0.00 -0.09 7.57 -51.93 -0.39 -0.48 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.42 8.06 -51.93 -0.42 0.00 16 29 H 0.09 1.09 7.96 -51.93 -0.41 0.68 16 30 H 0.34 4.04 7.86 -39.29 -0.31 3.73 16 31 H 0.06 0.67 7.86 -51.93 -0.41 0.26 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.55 6.74 -51.93 -0.35 1.20 16 35 H 0.05 0.58 8.05 -51.93 -0.42 0.16 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.13 1.66 4.73 -51.93 -0.25 1.41 16 39 H 0.39 3.91 8.91 -40.82 -0.36 3.54 16 LS Contribution 309.76 15.07 4.67 4.67 Total: -1.00 -31.72 309.76 -7.05 -38.77 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.23 Total: 3.47 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.79 Total: -3.05 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.24 Total: -42.61 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.26 Total: -17.41 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.72 -7.05 -38.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687773570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.812 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds