Wall clock time and date at job start Mon Mar 30 2020 04:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00026 * 2 1 4 4 H 1.48494 * 109.46853 * 269.99697 * 3 2 1 5 5 H 1.48502 * 109.46953 * 29.99664 * 3 2 1 6 6 H 1.48497 * 109.47001 * 149.99716 * 3 2 1 7 7 C 1.37880 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99917 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99914 * 179.97438 * 7 2 1 10 10 O 1.42904 * 109.47030 * 180.02562 * 9 7 2 11 11 C 1.42894 * 114.00100 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47462 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46882 * 64.99877 * 12 11 10 14 14 C 1.46899 * 110.99737 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.63246 * 322.97622 * 14 13 12 16 16 C 1.53054 * 109.63360 * 83.37495 * 14 13 12 17 17 C 1.51785 * 110.74532 * 34.78509 * 16 14 13 18 18 C 1.51775 * 113.81384 * 66.80813 * 17 16 14 19 19 C 1.52987 * 110.88371 * 292.99856 * 18 17 16 20 20 N 1.47200 * 108.66558 * 86.46093 * 19 18 17 21 21 C 1.33365 * 120.42835 * 288.04823 * 20 19 18 22 22 O 1.21283 * 119.89352 * 180.28314 * 21 20 19 23 23 H 0.96997 * 120.00132 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47065 * 60.00897 * 9 7 2 25 25 H 1.08995 * 109.47214 * 300.00799 * 9 7 2 26 26 H 1.09004 * 109.47091 * 59.99564 * 11 10 9 27 27 H 1.09003 * 109.47232 * 300.00576 * 11 10 9 28 28 H 1.08992 * 109.47300 * 185.00242 * 12 11 10 29 29 H 1.08996 * 109.47059 * 305.00025 * 12 11 10 30 30 H 1.00904 * 110.99967 * 56.04752 * 13 12 11 31 31 H 1.08999 * 109.22269 * 155.11438 * 16 14 13 32 32 H 1.09002 * 109.22613 * 274.49794 * 16 14 13 33 33 H 1.09003 * 108.61706 * 187.92848 * 17 16 14 34 34 H 1.09003 * 108.61958 * 305.82690 * 17 16 14 35 35 H 1.08999 * 109.19381 * 53.35928 * 18 17 16 36 36 H 1.09003 * 109.19939 * 172.68509 * 18 17 16 37 37 H 1.08991 * 109.61086 * 206.21957 * 19 18 17 38 38 H 1.09000 * 109.60280 * 326.71488 * 19 18 17 39 39 H 0.96997 * 119.78075 * 108.04382 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9879 -2.5414 0.0001 11 6 5.4124 -2.6542 0.0001 12 6 5.8070 -4.1324 -0.0004 13 7 5.3678 -4.7560 -1.2559 14 6 5.7299 -6.1792 -1.2917 15 1 6.7017 -6.3218 -0.8190 16 6 4.6716 -6.9980 -0.5487 17 6 3.2915 -6.3974 -0.7451 18 6 2.7827 -6.4846 -2.1724 19 6 3.6181 -5.6044 -3.1039 20 7 4.7823 -6.3783 -3.5648 21 6 5.7837 -6.6545 -2.7284 22 8 6.7407 -7.2885 -3.1198 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6797 0.8895 25 1 3.8745 -0.6807 -0.8904 26 1 5.8152 -2.1705 0.8901 27 1 5.8152 -2.1706 -0.8898 28 1 6.8897 -4.2195 0.0892 29 1 5.3311 -4.6358 0.8412 30 1 5.7444 -4.2665 -2.0539 31 1 4.6759 -8.0195 -0.9290 32 1 4.9089 -7.0103 0.5151 33 1 2.5897 -6.9174 -0.0931 34 1 3.3240 -5.3477 -0.4529 35 1 2.8395 -7.5193 -2.5105 36 1 1.7445 -6.1540 -2.2036 37 1 3.0158 -5.3043 -3.9613 38 1 3.9572 -4.7199 -2.5647 39 1 4.8213 -6.6894 -4.4827 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687773570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:02 Heat of formation + Delta-G solvation = -102.100161 kcal Electronic energy + Delta-G solvation = -19989.796198 eV Core-core repulsion = 16931.465352 eV Total energy + Delta-G solvation = -3058.330845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50585 -38.83700 -37.93248 -36.18810 -34.79187 -34.08241 -31.79439 -30.16916 -28.73086 -26.21677 -24.93978 -23.87618 -22.96828 -21.17291 -20.49988 -18.98619 -18.41616 -17.96235 -17.37516 -16.69247 -16.44546 -16.24705 -15.77685 -15.48077 -14.94766 -14.71688 -14.64275 -14.41626 -14.19892 -14.04740 -13.51119 -13.19458 -13.12584 -12.81741 -12.62279 -12.40082 -12.00289 -11.80115 -11.75512 -11.46566 -11.40334 -11.20994 -10.89317 -10.82759 -10.21400 -10.06330 -9.26704 -8.30356 -6.36282 1.37275 1.39273 1.49136 1.49638 2.33900 2.37386 3.02778 3.03468 3.19699 3.44828 3.94440 4.05546 4.14192 4.24356 4.33549 4.41923 4.45619 4.62369 4.64273 4.70492 4.75683 4.84966 4.92005 5.02957 5.12108 5.15789 5.25980 5.33339 5.39729 5.53171 5.77466 5.79782 5.92743 6.04463 6.26642 6.31972 6.68714 6.88093 7.20663 7.28213 8.86410 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.028422 B = 0.005107 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.924116 B = 5481.211172 C = 5828.011556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.247 1.247 7 C -0.534 4.534 8 H 0.035 0.965 9 C 0.179 3.821 10 O -0.385 6.385 11 C 0.053 3.947 12 C 0.068 3.932 13 N -0.664 5.664 14 C 0.078 3.922 15 H 0.081 0.919 16 C -0.097 4.097 17 C -0.115 4.115 18 C -0.125 4.125 19 C 0.090 3.910 20 N -0.700 5.700 21 C 0.519 3.481 22 O -0.601 6.601 23 H 0.270 0.730 24 H 0.006 0.994 25 H 0.008 0.992 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.344 0.656 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.730 -9.704 -3.485 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.772 3.228 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.170 1.170 7 C -0.571 4.571 8 H 0.054 0.946 9 C 0.103 3.897 10 O -0.304 6.304 11 C -0.025 4.025 12 C -0.060 4.060 13 N -0.298 5.298 14 C -0.034 4.034 15 H 0.099 0.901 16 C -0.135 4.135 17 C -0.153 4.153 18 C -0.164 4.164 19 C -0.033 4.033 20 N -0.349 5.349 21 C 0.305 3.695 22 O -0.483 6.483 23 H 0.079 0.921 24 H 0.023 0.977 25 H 0.025 0.975 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.164 0.836 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 11.276 -10.120 -3.251 15.497 hybrid contribution 0.755 0.777 -0.487 1.188 sum 12.032 -9.343 -3.738 15.685 Atomic orbital electron populations 1.70030 1.08175 1.28470 1.51661 1.25756 0.95662 1.03108 0.93891 0.85691 0.79468 0.78105 0.79559 1.18640 1.20400 1.17017 1.21150 0.90966 0.93732 1.51295 0.94649 1.20267 0.93240 0.81618 0.94617 1.87953 1.20348 1.26995 1.95101 1.22637 0.82688 0.96813 1.00336 1.22039 0.98479 0.92702 0.92815 1.60740 1.63314 1.00689 1.05101 1.21930 0.99727 0.90121 0.91645 0.90115 1.21265 0.94165 0.97619 1.00492 1.20947 0.94900 1.02907 0.96525 1.21589 0.99663 0.99656 0.95475 1.22393 0.85716 0.95903 0.99336 1.45911 1.20311 1.54649 1.14043 1.20718 0.81374 0.78719 0.88657 1.90724 1.35218 1.43634 1.78710 0.92070 0.97659 0.97467 0.92608 0.93305 0.91193 0.90167 0.83605 0.92006 0.90230 0.93078 0.90722 0.92145 0.91210 0.89004 0.86781 0.76079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.89 13.96 21.45 0.30 -57.59 16 2 C 0.01 0.77 5.47 84.66 0.46 1.23 16 3 Si 0.95 42.10 27.47 68.60 1.88 43.98 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.25 -10.05 6.54 99.48 0.65 -9.39 16 7 C -0.53 -30.90 9.99 25.60 0.26 -30.65 16 8 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 9 C 0.18 8.37 4.76 71.24 0.34 8.70 16 10 O -0.38 -15.87 10.27 -148.98 -1.53 -17.40 16 11 C 0.05 1.50 6.22 71.98 0.45 1.95 16 12 C 0.07 1.53 5.74 86.30 0.50 2.03 16 13 N -0.66 -15.15 2.07 -494.16 -1.02 -16.17 16 14 C 0.08 1.74 2.77 44.42 0.12 1.86 16 15 H 0.08 1.72 7.84 -2.39 -0.02 1.70 16 16 C -0.10 -2.09 5.28 30.21 0.16 -1.93 16 17 C -0.12 -2.84 5.20 29.79 0.15 -2.68 16 18 C -0.13 -2.84 5.73 30.19 0.17 -2.66 16 19 C 0.09 1.92 6.42 86.24 0.55 2.48 16 20 N -0.70 -14.73 5.27 -462.60 -2.44 -17.17 16 21 C 0.52 13.18 6.48 88.11 0.57 13.75 16 22 O -0.60 -19.70 17.92 -3.04 -0.05 -19.75 16 23 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 24 H 0.01 0.26 7.20 -2.39 -0.02 0.24 16 25 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.21 8.06 -2.39 -0.02 1.19 16 29 H 0.08 1.91 7.96 -2.39 -0.02 1.89 16 30 H 0.34 7.57 7.86 -89.69 -0.71 6.86 16 31 H 0.06 1.32 7.86 -2.39 -0.02 1.30 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 2.30 6.74 -2.39 -0.02 2.28 16 35 H 0.06 1.27 8.05 -2.39 -0.02 1.25 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.11 2.89 4.73 -2.39 -0.01 2.88 16 39 H 0.40 7.39 8.91 -92.71 -0.83 6.57 16 Total: -1.00 -69.35 309.76 0.34 -69.01 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -0.53 Total: 21.02 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 3.74 Total: -5.92 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -3.16 Total: -90.93 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.58 Total: -37.16 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.88 Total: 43.98 kcal Total: -69.35 0.34 -69.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687773570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.088 kcal (2) G-P(sol) polarization free energy of solvation -69.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds