Wall clock time and date at job start Mon Mar 30 2020 04:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99812 * 2 1 4 4 H 1.48504 * 109.47195 * 240.00226 * 3 2 1 5 5 H 1.48505 * 109.47096 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47520 * 119.99913 * 3 2 1 7 7 C 1.37871 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99841 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99959 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46955 * 179.97438 * 9 7 2 11 11 C 1.42905 * 114.00134 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47264 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47386 * 64.99761 * 12 11 10 14 14 C 1.46892 * 111.00071 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.63652 * 324.60422 * 14 13 12 16 16 C 1.53061 * 109.63409 * 204.00223 * 14 13 12 17 17 C 1.51869 * 110.73857 * 325.20120 * 16 14 13 18 18 C 1.51778 * 113.82580 * 293.22578 * 17 16 14 19 19 C 1.52985 * 110.87645 * 66.96590 * 18 17 16 20 20 N 1.47197 * 108.66277 * 273.53210 * 19 18 17 21 21 C 1.33370 * 120.42887 * 71.99996 * 20 19 18 22 22 O 1.21275 * 119.89635 * 179.67956 * 21 20 19 23 23 H 0.97007 * 120.00409 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47512 * 59.99846 * 9 7 2 25 25 H 1.09002 * 109.46988 * 299.99293 * 9 7 2 26 26 H 1.09001 * 109.47103 * 300.00246 * 11 10 9 27 27 H 1.09004 * 109.47054 * 59.99750 * 11 10 9 28 28 H 1.09004 * 109.46881 * 185.00370 * 12 11 10 29 29 H 1.09002 * 109.47196 * 304.99885 * 12 11 10 30 30 H 1.00901 * 110.99655 * 56.05095 * 13 12 11 31 31 H 1.09002 * 109.22584 * 85.54398 * 16 14 13 32 32 H 1.08997 * 109.22417 * 204.89187 * 16 14 13 33 33 H 1.09005 * 108.63642 * 172.07974 * 17 16 14 34 34 H 1.09006 * 108.46845 * 54.25328 * 17 16 14 35 35 H 1.08996 * 109.19903 * 306.60227 * 18 17 16 36 36 H 1.09009 * 109.19463 * 187.32331 * 18 17 16 37 37 H 1.08999 * 109.60486 * 153.78668 * 19 18 17 38 38 H 1.08999 * 109.74853 * 33.37035 * 19 18 17 39 39 H 0.96996 * 119.78571 * 251.97155 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6481 -5.9561 0.0004 13 7 3.4092 -5.8876 1.2550 14 6 4.4607 -6.9128 1.2895 15 1 4.1081 -7.8160 0.7917 16 6 4.8227 -7.2294 2.7426 17 6 4.7279 -5.9825 3.6044 18 6 5.7618 -4.9238 3.2669 19 6 5.5078 -4.3374 1.8769 20 7 6.1786 -5.1854 0.8781 21 6 5.6989 -6.3955 0.5878 22 8 6.2559 -7.0837 -0.2409 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 0.9453 -4.9822 0.8913 27 1 0.9447 -4.9827 -0.8886 28 1 2.1820 -6.9375 -0.0888 29 1 3.3211 -5.7957 -0.8419 30 1 2.7979 -5.9692 2.0536 31 1 4.1371 -7.9846 3.1270 32 1 5.8409 -7.6165 2.7826 33 1 4.8526 -6.2703 4.6484 34 1 3.7346 -5.5512 3.4797 35 1 6.7549 -5.3722 3.2907 36 1 5.7121 -4.1254 4.0073 37 1 5.9107 -3.3258 1.8275 38 1 4.4365 -4.3145 1.6770 39 1 6.9744 -4.8618 0.4278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687773571.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:05 Heat of formation + Delta-G solvation = -84.172311 kcal Electronic energy + Delta-G solvation = -20001.913587 eV Core-core repulsion = 16944.360152 eV Total energy + Delta-G solvation = -3057.553435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.32193 -37.31206 -36.59111 -34.97576 -33.26211 -32.60893 -30.58562 -28.13703 -26.66752 -25.34358 -23.88743 -22.34124 -21.67801 -20.38977 -19.37150 -17.11335 -16.65965 -16.42773 -16.00369 -15.43498 -15.16192 -14.58399 -14.34834 -14.24634 -13.94841 -13.59376 -13.32113 -13.05628 -12.82729 -12.44828 -12.13035 -11.82337 -11.62594 -11.27347 -10.95066 -10.83289 -10.79770 -10.75128 -10.58102 -10.45084 -10.02180 -9.70331 -9.11614 -8.88766 -8.81491 -8.18153 -8.14256 -6.11000 -4.12342 2.80750 3.31378 3.34619 3.38003 3.61891 4.08146 4.34092 4.52051 4.68603 4.83071 4.87540 5.00458 5.20279 5.25642 5.34919 5.45844 5.57509 5.62932 5.67697 5.70024 5.92500 5.95889 6.03370 6.04824 6.07667 6.20776 6.25010 6.70927 6.87134 7.10008 7.10496 7.31211 7.42968 7.56546 7.79636 8.16044 8.48552 8.59546 9.01314 9.52540 11.00526 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.023841 B = 0.005326 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.186652 B = 5256.254544 C = 5633.649590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.381 6.381 11 C 0.066 3.934 12 C 0.058 3.942 13 N -0.660 5.660 14 C 0.068 3.932 15 H 0.076 0.924 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.133 4.133 19 C 0.083 3.917 20 N -0.703 5.703 21 C 0.532 3.468 22 O -0.572 6.572 23 H 0.264 0.736 24 H 0.002 0.998 25 H 0.004 0.996 26 H 0.036 0.964 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.348 0.652 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.143 0.857 39 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.246 -12.398 7.549 16.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.301 6.301 11 C -0.012 4.012 12 C -0.071 4.071 13 N -0.295 5.295 14 C -0.045 4.045 15 H 0.094 0.906 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.171 4.171 19 C -0.040 4.040 20 N -0.352 5.352 21 C 0.317 3.683 22 O -0.452 6.452 23 H 0.073 0.927 24 H 0.019 0.981 25 H 0.021 0.979 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.170 0.830 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.160 0.840 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 7.793 -12.166 7.010 16.059 hybrid contribution -0.177 0.291 0.002 0.340 sum 7.617 -11.875 7.013 15.755 Atomic orbital electron populations 1.69952 1.06100 1.27203 1.50645 1.24935 0.94940 0.99370 0.95235 0.86425 0.79331 0.82064 0.78812 1.20080 1.21225 1.20014 1.20997 0.93987 0.89315 1.50650 0.91595 1.20174 0.88824 0.83815 0.95153 1.87931 1.34744 1.12343 1.95058 1.22219 0.93708 0.86182 0.99128 1.22142 0.95873 0.96239 0.92820 1.60629 1.15909 1.47673 1.05307 1.21930 0.91501 0.94156 0.96950 0.90585 1.21476 1.02584 0.98645 0.92762 1.21094 1.01040 0.94983 0.98425 1.21711 0.98671 0.98607 0.98141 1.22490 1.03996 0.92088 0.85474 1.45753 1.30191 1.16668 1.42583 1.20282 0.85295 0.81440 0.81279 1.90712 1.61867 1.57803 1.34806 0.92655 0.98052 0.97852 0.94579 0.94010 0.94090 0.90323 0.82975 0.90935 0.91255 0.92326 0.90582 0.92530 0.90931 0.90868 0.84018 0.77283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.49 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -14.63 9.43 -34.44 -0.32 -14.96 16 8 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.19 5.16 5.69 36.01 0.20 5.36 16 10 O -0.38 -8.65 10.27 -35.23 -0.36 -9.01 16 11 C 0.07 1.13 6.22 37.16 0.23 1.36 16 12 C 0.06 0.82 5.87 -3.83 -0.02 0.80 16 13 N -0.66 -8.34 2.51 -107.54 -0.27 -8.61 16 14 C 0.07 0.82 2.78 -68.48 -0.19 0.63 16 15 H 0.08 0.92 7.81 -51.93 -0.41 0.51 16 16 C -0.12 -1.11 5.40 -27.27 -0.15 -1.25 16 17 C -0.12 -1.09 5.19 -27.93 -0.15 -1.23 16 18 C -0.13 -1.36 5.74 -27.36 -0.16 -1.52 16 19 C 0.08 1.06 6.42 -3.67 -0.02 1.04 16 20 N -0.70 -9.57 5.27 -59.90 -0.32 -9.89 16 21 C 0.53 8.08 6.57 -11.25 -0.07 8.00 16 22 O -0.57 -10.76 17.92 5.56 0.10 -10.66 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 25 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 29 H 0.08 1.28 8.01 -51.93 -0.42 0.87 16 30 H 0.35 3.83 6.77 -39.29 -0.27 3.56 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.69 7.86 -51.93 -0.41 0.29 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 35 H 0.06 0.58 8.05 -51.93 -0.42 0.16 16 36 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.14 2.14 5.06 -51.93 -0.26 1.88 16 39 H 0.39 5.01 8.91 -40.82 -0.36 4.65 16 LS Contribution 312.59 15.07 4.71 4.71 Total: -1.00 -32.44 312.59 -7.36 -39.80 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.19 Total: 3.24 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.75 Total: -0.27 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.15 Total: -44.28 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.26 Total: -19.67 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.44 -7.36 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687773571.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.371 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds