Wall clock time and date at job start Mon Mar 30 2020 04:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99812 * 2 1 4 4 H 1.48504 * 109.47195 * 240.00226 * 3 2 1 5 5 H 1.48505 * 109.47096 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47520 * 119.99913 * 3 2 1 7 7 C 1.37871 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99841 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99959 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46955 * 179.97438 * 9 7 2 11 11 C 1.42905 * 114.00134 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47264 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47386 * 64.99761 * 12 11 10 14 14 C 1.46892 * 111.00071 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.63652 * 324.60422 * 14 13 12 16 16 C 1.53061 * 109.63409 * 204.00223 * 14 13 12 17 17 C 1.51869 * 110.73857 * 325.20120 * 16 14 13 18 18 C 1.51778 * 113.82580 * 293.22578 * 17 16 14 19 19 C 1.52985 * 110.87645 * 66.96590 * 18 17 16 20 20 N 1.47197 * 108.66277 * 273.53210 * 19 18 17 21 21 C 1.33370 * 120.42887 * 71.99996 * 20 19 18 22 22 O 1.21275 * 119.89635 * 179.67956 * 21 20 19 23 23 H 0.97007 * 120.00409 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47512 * 59.99846 * 9 7 2 25 25 H 1.09002 * 109.46988 * 299.99293 * 9 7 2 26 26 H 1.09001 * 109.47103 * 300.00246 * 11 10 9 27 27 H 1.09004 * 109.47054 * 59.99750 * 11 10 9 28 28 H 1.09004 * 109.46881 * 185.00370 * 12 11 10 29 29 H 1.09002 * 109.47196 * 304.99885 * 12 11 10 30 30 H 1.00901 * 110.99655 * 56.05095 * 13 12 11 31 31 H 1.09002 * 109.22584 * 85.54398 * 16 14 13 32 32 H 1.08997 * 109.22417 * 204.89187 * 16 14 13 33 33 H 1.09005 * 108.63642 * 172.07974 * 17 16 14 34 34 H 1.09006 * 108.46845 * 54.25328 * 17 16 14 35 35 H 1.08996 * 109.19903 * 306.60227 * 18 17 16 36 36 H 1.09009 * 109.19463 * 187.32331 * 18 17 16 37 37 H 1.08999 * 109.60486 * 153.78668 * 19 18 17 38 38 H 1.08999 * 109.74853 * 33.37035 * 19 18 17 39 39 H 0.96996 * 119.78571 * 251.97155 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6481 -5.9561 0.0004 13 7 3.4092 -5.8876 1.2550 14 6 4.4607 -6.9128 1.2895 15 1 4.1081 -7.8160 0.7917 16 6 4.8227 -7.2294 2.7426 17 6 4.7279 -5.9825 3.6044 18 6 5.7618 -4.9238 3.2669 19 6 5.5078 -4.3374 1.8769 20 7 6.1786 -5.1854 0.8781 21 6 5.6989 -6.3955 0.5878 22 8 6.2559 -7.0837 -0.2409 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 0.9453 -4.9822 0.8913 27 1 0.9447 -4.9827 -0.8886 28 1 2.1820 -6.9375 -0.0888 29 1 3.3211 -5.7957 -0.8419 30 1 2.7979 -5.9692 2.0536 31 1 4.1371 -7.9846 3.1270 32 1 5.8409 -7.6165 2.7826 33 1 4.8526 -6.2703 4.6484 34 1 3.7346 -5.5512 3.4797 35 1 6.7549 -5.3722 3.2907 36 1 5.7121 -4.1254 4.0073 37 1 5.9107 -3.3258 1.8275 38 1 4.4365 -4.3145 1.6770 39 1 6.9744 -4.8618 0.4278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687773571.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:04 Heat of formation + Delta-G solvation = -107.891527 kcal Electronic energy + Delta-G solvation = -20002.942130 eV Core-core repulsion = 16944.360152 eV Total energy + Delta-G solvation = -3058.581978 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.40594 -38.76813 -37.93979 -36.16829 -34.88308 -34.11588 -31.72652 -29.69721 -28.31731 -26.39958 -24.88125 -24.42587 -22.98168 -21.30450 -20.38239 -18.58440 -18.25804 -17.72416 -17.42425 -16.89861 -16.50882 -16.19459 -15.69751 -15.42709 -15.21952 -14.78337 -14.55549 -14.28084 -14.04797 -13.79083 -13.38968 -13.32964 -12.88475 -12.81360 -12.66132 -12.45285 -12.27334 -11.89120 -11.71500 -11.51719 -11.42162 -11.21540 -10.86506 -10.81327 -10.13709 -9.99440 -9.19046 -8.27428 -6.38326 1.42602 1.46438 1.54624 1.64441 2.37684 2.54771 3.04966 3.06925 3.26327 3.57635 3.86732 4.02602 4.14326 4.22254 4.26026 4.36836 4.47944 4.59464 4.65153 4.76615 4.83506 4.87741 4.91435 5.01674 5.18021 5.23596 5.26037 5.26485 5.42785 5.60100 5.66388 5.79634 6.02169 6.03228 6.36227 6.46053 6.62264 6.91314 7.32982 7.33681 8.84493 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.023841 B = 0.005326 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.186652 B = 5256.254544 C = 5633.649590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.210 3.790 10 O -0.392 6.392 11 C 0.058 3.942 12 C 0.070 3.930 13 N -0.664 5.664 14 C 0.074 3.926 15 H 0.080 0.920 16 C -0.109 4.109 17 C -0.117 4.117 18 C -0.128 4.128 19 C 0.082 3.918 20 N -0.700 5.700 21 C 0.522 3.478 22 O -0.616 6.616 23 H 0.269 0.731 24 H -0.022 1.022 25 H -0.011 1.011 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.361 0.639 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.123 0.877 39 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.617 -12.508 9.030 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.135 3.865 10 O -0.312 6.312 11 C -0.019 4.019 12 C -0.059 4.059 13 N -0.301 5.301 14 C -0.038 4.038 15 H 0.098 0.902 16 C -0.147 4.147 17 C -0.154 4.154 18 C -0.166 4.166 19 C -0.042 4.042 20 N -0.347 5.347 21 C 0.308 3.692 22 O -0.499 6.499 23 H 0.078 0.922 24 H -0.004 1.004 25 H 0.007 0.993 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.185 0.815 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 8.157 -12.279 8.521 17.027 hybrid contribution -0.306 0.282 -0.474 0.630 sum 7.850 -11.997 8.048 16.442 Atomic orbital electron populations 1.70061 1.07697 1.28497 1.50872 1.25883 0.95854 1.03162 0.94195 0.85322 0.78145 0.77168 0.79321 1.19512 1.20311 1.18678 1.21337 0.94058 0.90790 1.51613 0.91984 1.19769 0.88629 0.84891 0.93219 1.87895 1.34531 1.13685 1.95096 1.22525 0.95085 0.84353 0.99937 1.21976 0.94704 0.96431 0.92811 1.60489 1.16163 1.48380 1.05088 1.21884 0.89805 0.93600 0.98551 0.90209 1.21482 1.03059 0.99445 0.90751 1.21094 1.00360 0.94422 0.99545 1.21663 0.99222 0.99290 0.96434 1.22507 1.02618 0.92247 0.86792 1.45855 1.30037 1.16389 1.42409 1.20904 0.86008 0.81379 0.80872 1.90682 1.63436 1.59008 1.36818 0.92225 1.00429 0.99330 0.92975 0.93906 0.90762 0.92825 0.81482 0.88249 0.91599 0.90191 0.90813 0.92334 0.89862 0.90955 0.85983 0.77189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.98 43.60 29.54 68.60 2.03 45.62 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.54 -31.26 9.43 25.60 0.24 -31.02 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.38 5.69 71.24 0.41 11.79 16 10 O -0.39 -18.02 10.27 -148.98 -1.53 -19.55 16 11 C 0.06 1.98 6.22 71.98 0.45 2.42 16 12 C 0.07 1.90 5.87 86.30 0.51 2.40 16 13 N -0.66 -15.81 2.51 -494.16 -1.24 -17.05 16 14 C 0.07 1.69 2.78 44.42 0.12 1.81 16 15 H 0.08 1.78 7.81 -2.39 -0.02 1.76 16 16 C -0.11 -1.78 5.40 30.24 0.16 -1.61 16 17 C -0.12 -1.82 5.19 29.82 0.15 -1.67 16 18 C -0.13 -2.37 5.74 30.19 0.17 -2.19 16 19 C 0.08 2.02 6.42 86.24 0.55 2.58 16 20 N -0.70 -18.97 5.27 -462.60 -2.44 -21.41 16 21 C 0.52 15.72 6.57 88.11 0.58 16.30 16 22 O -0.62 -23.47 17.92 -3.01 -0.05 -23.52 16 23 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 24 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 25 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.07 1.56 8.06 -2.38 -0.02 1.55 16 29 H 0.05 1.75 8.01 -2.39 -0.02 1.73 16 30 H 0.36 7.10 6.77 -89.69 -0.61 6.49 16 31 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.16 7.86 -2.39 -0.02 1.14 16 33 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.07 1.22 5.93 -2.38 -0.01 1.20 16 35 H 0.06 1.08 8.05 -2.39 -0.02 1.06 16 36 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.12 3.62 5.06 -2.39 -0.01 3.61 16 39 H 0.39 10.19 8.91 -92.71 -0.83 9.36 16 Total: -1.00 -70.48 312.59 0.48 -70.01 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -0.38 Total: 19.08 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 3.81 Total: 1.68 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -3.39 Total: -93.32 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -1.58 Total: -43.07 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -70.48 0.48 -70.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687773571.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.884 kcal (2) G-P(sol) polarization free energy of solvation -70.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds