Wall clock time and date at job start Mon Mar 30 2020 04:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 112.99497 * 2 1 4 4 N 1.46501 * 109.46939 * 50.33465 * 3 2 1 5 5 C 1.34781 * 120.00070 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99531 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.00261 * 180.02562 * 5 4 3 8 8 H 1.09005 * 109.47168 * 319.99959 * 7 5 4 9 9 N 1.46901 * 109.47231 * 199.99856 * 7 5 4 10 10 C 1.53006 * 109.47471 * 79.99562 * 7 5 4 11 11 C 1.52999 * 109.46997 * 185.00271 * 10 7 5 12 12 C 1.50706 * 109.46573 * 180.02562 * 11 10 7 13 13 H 1.07995 * 120.00167 * 359.72054 * 12 11 10 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47474 * 90.00322 * 16 14 12 18 18 H 1.48507 * 109.46754 * 210.00056 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99887 * 16 14 12 20 20 C 1.54035 * 113.81782 * 131.82267 * 2 1 3 21 21 O 1.44453 * 85.42155 * 91.81554 * 20 2 1 22 22 C 1.44172 * 93.37867 * 24.08605 * 21 20 2 23 23 H 1.08997 * 109.47142 * 60.00446 * 1 2 3 24 24 H 1.09004 * 109.46691 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47277 * 299.99581 * 1 2 3 26 26 H 1.08997 * 109.47159 * 290.33279 * 3 2 1 27 27 H 1.08997 * 109.46710 * 170.33213 * 3 2 1 28 28 H 0.97005 * 120.00288 * 359.97438 * 4 3 2 29 29 H 1.00892 * 110.99802 * 299.99727 * 9 7 5 30 30 H 1.00896 * 111.00006 * 63.95285 * 9 7 5 31 31 H 1.09000 * 109.46866 * 65.00059 * 10 7 5 32 32 H 1.09001 * 109.46611 * 305.00176 * 10 7 5 33 33 H 1.09000 * 109.47486 * 60.00167 * 11 10 7 34 34 H 1.09001 * 109.47362 * 299.99445 * 11 10 7 35 35 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 36 36 H 1.08993 * 113.86413 * 205.91633 * 20 2 1 37 37 H 1.08997 * 113.86524 * 337.62559 * 20 2 1 38 38 H 1.08999 * 113.86346 * 221.76813 * 22 21 20 39 39 H 1.09000 * 113.98255 * 90.08018 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1277 1.4085 0.0000 4 7 1.5069 2.2024 1.0633 5 6 1.8794 3.4838 1.2526 6 8 2.7289 3.9794 0.5429 7 6 1.2413 4.3003 2.3466 8 1 0.1751 4.0776 2.3914 9 7 1.4316 5.7295 2.0655 10 6 1.8914 3.9532 3.6875 11 6 1.1614 4.6880 4.8135 12 6 1.8022 4.3465 6.1342 13 1 2.6428 3.6694 6.1674 14 6 1.3118 4.8947 7.3004 15 7 0.2846 5.7149 7.2605 16 14 2.1066 4.4720 8.9372 17 1 3.1896 5.4456 9.2277 18 1 1.0852 4.5322 10.0136 19 1 2.6766 3.1024 8.8717 20 6 2.1521 -0.9397 1.0501 21 8 2.1472 -1.9296 -0.0019 22 6 2.1521 -0.9396 -1.0500 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.9410 1.8824 -0.9636 27 1 3.2022 1.3471 0.1726 28 1 0.8271 1.8061 1.6306 29 1 2.4124 5.9613 2.0191 30 1 0.9561 5.9976 1.2170 31 1 2.9379 4.2578 3.6735 32 1 1.8281 2.8779 3.8543 33 1 0.1149 4.3834 4.8276 34 1 1.2247 5.7633 4.6467 35 1 -0.0605 6.1002 8.0810 36 1 3.1503 -0.6426 1.3714 37 1 1.4869 -1.1741 1.8812 38 1 1.4869 -1.1741 -1.8811 39 1 3.1494 -0.6413 -1.3731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691558367.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:40 Heat of formation + Delta-G solvation = -92.984171 kcal Electronic energy + Delta-G solvation = -19209.294112 eV Core-core repulsion = 16151.358566 eV Total energy + Delta-G solvation = -3057.935546 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.86789 -40.78132 -36.89528 -36.21159 -34.79642 -32.77563 -31.90703 -28.76088 -27.81417 -27.54425 -26.38618 -24.66742 -22.30612 -21.23625 -19.92687 -18.73890 -18.10126 -17.67308 -17.08645 -16.94761 -16.63533 -16.44744 -16.22003 -15.84253 -15.26316 -14.84590 -14.55556 -14.26958 -14.17893 -13.77594 -13.42775 -13.31740 -12.98533 -12.80241 -12.64682 -12.50678 -12.23302 -11.81297 -11.70320 -11.61876 -11.49265 -11.23578 -10.98394 -10.67732 -10.47740 -10.14727 -9.60455 -8.12810 -6.22838 1.42803 1.43845 1.51396 1.54663 2.13620 2.45566 2.69002 3.12266 3.20528 3.59299 3.61297 3.82136 3.91545 4.10147 4.13640 4.33585 4.37553 4.52196 4.57225 4.63646 4.79580 4.81419 4.86534 4.91238 4.96422 5.09034 5.14449 5.26659 5.27989 5.38181 5.58751 5.86204 6.00284 6.11372 6.31758 6.44205 6.54780 6.96167 7.13883 7.45382 8.98385 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.022586 B = 0.004315 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.432629 B = 6487.657260 C = 7273.026596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.132 4.132 3 C 0.129 3.871 4 N -0.713 5.713 5 C 0.489 3.511 6 O -0.583 6.583 7 C 0.085 3.915 8 H 0.111 0.889 9 N -0.820 5.820 10 C -0.082 4.082 11 C 0.038 3.962 12 C -0.543 4.543 13 H 0.056 0.944 14 C 0.003 3.997 15 N -0.930 5.930 16 Si 0.958 3.042 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.263 1.263 20 C 0.037 3.963 21 O -0.403 6.403 22 C 0.048 3.952 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.413 0.587 29 H 0.345 0.655 30 H 0.347 0.653 31 H 0.041 0.959 32 H 0.068 0.932 33 H -0.005 1.005 34 H 0.005 0.995 35 H 0.262 0.738 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 -12.630 -16.478 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.133 4.133 3 C 0.005 3.995 4 N -0.366 5.366 5 C 0.274 3.726 6 O -0.463 6.463 7 C -0.031 4.031 8 H 0.129 0.871 9 N -0.349 5.349 10 C -0.120 4.120 11 C 0.001 3.999 12 C -0.581 4.581 13 H 0.074 0.926 14 C -0.195 4.195 15 N -0.570 5.570 16 Si 0.783 3.217 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.188 1.188 20 C -0.039 4.039 21 O -0.322 6.322 22 C -0.029 4.029 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.250 0.750 29 H 0.158 0.842 30 H 0.160 0.840 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.014 0.986 34 H 0.023 0.977 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.229 -12.346 -16.186 20.358 hybrid contribution 0.550 -0.187 0.352 0.679 sum 0.779 -12.533 -15.834 20.209 Atomic orbital electron populations 1.21590 0.90525 1.03219 1.03333 1.23892 0.98762 0.93375 0.97251 1.21416 0.97032 0.89962 0.91098 1.46061 1.43041 1.11665 1.35826 1.22348 0.82048 0.82984 0.85215 1.90640 1.34084 1.72224 1.49395 1.21643 1.01255 0.87670 0.92510 0.87119 1.58969 1.18860 1.14217 1.42823 1.21392 0.98519 1.00167 0.91942 1.18836 0.94092 0.95491 0.91457 1.21740 1.15662 1.27344 0.93372 0.92608 1.25879 0.95564 0.95049 1.03023 1.70101 1.25865 1.32292 1.28752 0.85561 0.78140 0.78947 0.79054 1.20264 1.20796 1.18762 1.24298 1.01144 0.86054 0.92401 1.89712 1.95904 1.28678 1.17945 1.24165 1.01461 0.85122 0.92121 0.90809 0.91123 0.91260 0.91129 0.92037 0.74979 0.84177 0.84020 0.93996 0.91317 0.98647 0.97663 0.92956 0.89833 0.88043 0.87242 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.82 71.98 0.63 -0.93 16 2 C -0.13 -1.87 1.12 -51.48 -0.06 -1.93 16 3 C 0.13 2.34 5.15 86.38 0.44 2.79 16 4 N -0.71 -15.09 5.32 -463.06 -2.46 -17.56 16 5 C 0.49 14.08 7.07 87.65 0.62 14.70 16 6 O -0.58 -20.35 16.25 -3.02 -0.05 -20.40 16 7 C 0.08 2.69 3.15 44.17 0.14 2.83 16 8 H 0.11 3.20 8.14 -2.38 -0.02 3.18 16 9 N -0.82 -27.00 8.44 -171.79 -1.45 -28.45 16 10 C -0.08 -3.19 4.78 30.60 0.15 -3.04 16 11 C 0.04 1.96 4.86 29.85 0.15 2.11 16 12 C -0.54 -30.44 9.11 25.60 0.23 -30.20 16 13 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 14 C 0.00 0.15 5.46 84.66 0.46 0.61 16 15 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 16 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 20 C 0.04 0.61 8.37 72.30 0.61 1.22 16 21 O -0.40 -7.89 12.38 -148.98 -1.84 -9.73 16 22 C 0.05 0.66 8.37 72.29 0.60 1.26 16 23 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 25 H 0.07 0.80 6.64 -2.39 -0.02 0.78 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.26 7.98 -2.39 -0.02 1.24 16 28 H 0.41 7.21 6.92 -92.70 -0.64 6.57 16 29 H 0.34 11.70 8.58 -89.70 -0.77 10.93 16 30 H 0.35 9.72 9.06 -89.70 -0.81 8.90 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.00 0.28 7.75 -2.39 -0.02 0.26 16 35 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.08 1.38 7.99 -2.39 -0.02 1.36 16 37 H 0.10 1.51 8.10 -2.39 -0.02 1.49 16 38 H 0.11 1.12 8.10 -2.39 -0.02 1.10 16 39 H 0.09 1.09 8.10 -2.39 -0.02 1.07 16 Total: -1.00 -69.76 324.99 -0.68 -70.44 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: -1.16 Total: 26.19 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 3.98 Total: -10.59 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -3.63 Total: -101.98 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -1.89 Total: -30.13 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.76 -0.68 -70.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691558367.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.549 kcal (2) G-P(sol) polarization free energy of solvation -69.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds