Wall clock time and date at job start Mon Mar 30 2020 04:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00050 * 2 1 4 4 H 1.48502 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46975 * 299.99826 * 3 2 1 6 6 H 1.48498 * 109.47170 * 59.99754 * 3 2 1 7 7 C 1.37874 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00362 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47136 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47011 * 55.00017 * 11 10 9 13 13 N 1.46895 * 109.47263 * 294.99687 * 11 10 9 14 14 C 1.50702 * 109.46732 * 174.99999 * 11 10 9 15 15 O 1.21283 * 120.00262 * 100.00162 * 14 11 10 16 16 N 1.34777 * 119.99928 * 279.72068 * 14 11 10 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 11 18 18 C 1.53184 * 109.54769 * 274.56102 * 17 16 14 19 19 C 1.53088 * 109.16278 * 183.15141 * 18 17 16 20 20 O 1.42899 * 109.41554 * 57.60730 * 19 18 17 21 21 C 1.42897 * 114.09860 * 298.83662 * 20 19 18 22 22 C 1.53091 * 109.41288 * 61.16432 * 21 20 19 23 23 H 0.97000 * 120.00058 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47462 * 59.99624 * 9 7 2 25 25 H 1.09001 * 109.47503 * 299.99203 * 9 7 2 26 26 H 1.08995 * 109.46737 * 59.99327 * 10 9 7 27 27 H 1.09001 * 109.46469 * 300.00172 * 10 9 7 28 28 H 1.00901 * 111.00088 * 300.00693 * 13 11 10 29 29 H 1.00898 * 111.00134 * 63.95809 * 13 11 10 30 30 H 0.97000 * 120.00317 * 0.28382 * 16 14 11 31 31 H 1.09004 * 109.53842 * 34.82745 * 17 16 14 32 32 H 1.08995 * 109.51546 * 303.06015 * 18 17 16 33 33 H 1.08999 * 109.52096 * 63.24219 * 18 17 16 34 34 H 1.09002 * 109.48022 * 297.62261 * 19 18 17 35 35 H 1.09002 * 109.47713 * 177.58917 * 19 18 17 36 36 H 1.09000 * 109.48518 * 301.17839 * 21 20 19 37 37 H 1.09000 * 109.49046 * 181.14776 * 21 20 19 38 38 H 1.09005 * 109.52310 * 182.48334 * 22 21 20 39 39 H 1.08999 * 109.52638 * 62.29286 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 1 0.7879 -5.0072 -0.8404 13 7 0.7290 -5.1181 1.2567 14 6 2.4549 -6.1298 -0.1227 15 8 2.7871 -6.7531 0.8633 16 7 2.9530 -6.4628 -1.3299 17 6 3.8958 -7.5775 -1.4512 18 6 5.3179 -7.0782 -1.1773 19 6 6.3037 -8.2312 -1.3832 20 8 6.1710 -8.7378 -2.7128 21 6 4.8755 -9.2620 -3.0109 22 6 3.8322 -8.1504 -2.8704 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8904 27 1 2.8719 -3.6043 -0.8895 28 1 1.3491 -5.1021 2.0525 29 1 0.0242 -4.4001 1.3330 30 1 2.6874 -5.9643 -2.1185 31 1 3.6360 -8.3546 -0.7323 32 1 5.5575 -6.2668 -1.8644 33 1 5.3864 -6.7193 -0.1503 34 1 6.0886 -9.0254 -0.6684 35 1 7.3212 -7.8709 -1.2314 36 1 4.6417 -10.0697 -2.3173 37 1 4.8639 -9.6444 -4.0315 38 1 2.8383 -8.5584 -3.0543 39 1 4.0420 -7.3606 -3.5917 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691565198.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:47 Heat of formation + Delta-G solvation = -108.028669 kcal Electronic energy + Delta-G solvation = -19299.276578 eV Core-core repulsion = 16240.688654 eV Total energy + Delta-G solvation = -3058.587925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.18758 -38.91248 -35.73559 -35.04435 -32.87094 -31.61233 -31.35735 -29.90225 -26.78017 -24.88095 -23.84312 -23.34053 -20.73391 -20.62288 -19.71767 -17.39902 -16.88557 -16.25843 -16.24556 -15.58973 -15.07695 -14.88258 -14.54692 -14.45860 -14.08234 -13.80427 -13.57923 -13.04761 -12.95261 -12.58220 -12.18109 -11.78134 -11.69301 -11.56642 -11.16298 -11.09717 -10.95995 -10.67886 -10.62738 -10.07236 -10.01597 -9.82580 -9.28842 -9.19975 -9.00701 -8.46214 -8.20544 -6.10490 -4.13635 2.90568 3.19336 3.24890 3.33006 3.36922 3.63610 4.37852 4.43031 4.60112 4.70354 4.88489 4.96668 4.98561 5.17510 5.20372 5.25920 5.33250 5.41681 5.46459 5.56023 5.60134 5.73918 5.75948 5.87913 6.05606 6.26469 6.48753 6.53740 6.85220 6.92543 7.41529 7.49860 7.59185 7.68958 7.86536 7.88950 8.29128 8.44775 8.92569 9.51532 11.00452 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.027585 B = 0.004095 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.801466 B = 6835.941930 C = 7370.346681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.074 3.926 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.527 3.473 15 O -0.539 6.539 16 N -0.731 5.731 17 C 0.146 3.854 18 C -0.168 4.168 19 C 0.064 3.936 20 O -0.384 6.384 21 C 0.065 3.935 22 C -0.164 4.164 23 H 0.261 0.739 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.345 0.655 29 H 0.354 0.646 30 H 0.402 0.598 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.572 -16.131 -5.803 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.041 4.041 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.314 3.686 15 O -0.415 6.415 16 N -0.383 5.383 17 C 0.041 3.959 18 C -0.207 4.207 19 C -0.013 4.013 20 O -0.303 6.303 21 C -0.012 4.012 22 C -0.203 4.203 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.158 0.842 29 H 0.170 0.830 30 H 0.236 0.764 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.560 -17.179 -5.479 19.553 hybrid contribution 0.419 2.311 -0.008 2.349 sum 7.979 -14.868 -5.487 17.744 Atomic orbital electron populations 1.69957 1.06025 1.26690 1.50526 1.25012 0.94866 0.99321 0.95110 0.86532 0.80112 0.83677 0.77675 1.19754 1.20929 1.20921 1.21216 0.93053 0.90885 1.51010 0.92677 1.19112 0.93726 0.91140 0.97363 1.22374 0.99860 0.93970 1.01454 1.21476 0.94682 0.92328 0.95596 0.88614 1.58746 1.18457 1.55889 1.03189 1.20924 0.80817 0.84368 0.82514 1.90624 1.60404 1.53354 1.37085 1.46070 1.47124 1.34920 1.10176 1.20877 0.88572 0.89513 0.96967 1.22631 0.94991 0.99445 1.03656 1.22574 0.99885 0.95051 0.83785 1.87933 1.31296 1.79882 1.31139 1.22523 0.82555 0.94440 1.01683 1.22510 1.00746 1.00172 0.96837 0.92922 0.96334 0.96383 0.92722 0.92567 0.84161 0.83050 0.76408 0.89505 0.90633 0.90125 0.92929 0.88564 0.92914 0.88460 0.90091 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.66 4.78 -26.73 -0.13 -2.79 16 11 C 0.07 1.25 3.21 -68.87 -0.22 1.03 16 12 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 13 N -0.83 -14.29 8.94 -5.66 -0.05 -14.34 16 14 C 0.53 8.57 7.05 -10.98 -0.08 8.49 16 15 O -0.54 -10.33 15.91 5.55 0.09 -10.24 16 16 N -0.73 -9.25 5.08 -53.62 -0.27 -9.52 16 17 C 0.15 1.64 2.54 -67.74 -0.17 1.47 16 18 C -0.17 -1.89 5.72 -26.59 -0.15 -2.04 16 19 C 0.06 0.62 6.84 37.20 0.25 0.88 16 20 O -0.38 -4.03 10.76 -35.23 -0.38 -4.41 16 21 C 0.07 0.53 6.84 37.20 0.25 0.79 16 22 C -0.16 -1.41 5.61 -26.59 -0.15 -1.56 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.35 6.03 8.58 -39.29 -0.34 5.69 16 29 H 0.35 6.11 7.55 -39.29 -0.30 5.81 16 30 H 0.40 4.33 8.61 -40.82 -0.35 3.97 16 31 H 0.09 1.11 7.58 -51.93 -0.39 0.71 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 319.68 15.07 4.82 4.82 Total: -1.00 -31.48 319.68 -7.36 -38.85 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.35 Total: 10.25 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -0.93 Total: -6.38 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.41 Total: -49.08 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.29 Total: -14.65 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.48 -7.36 -38.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691565198.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.180 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds