Wall clock time and date at job start Mon Mar 30 2020 04:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00050 * 2 1 4 4 H 1.48502 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46975 * 299.99826 * 3 2 1 6 6 H 1.48498 * 109.47170 * 59.99754 * 3 2 1 7 7 C 1.37874 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00362 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47136 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47011 * 55.00017 * 11 10 9 13 13 N 1.46895 * 109.47263 * 294.99687 * 11 10 9 14 14 C 1.50702 * 109.46732 * 174.99999 * 11 10 9 15 15 O 1.21283 * 120.00262 * 100.00162 * 14 11 10 16 16 N 1.34777 * 119.99928 * 279.72068 * 14 11 10 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 11 18 18 C 1.53184 * 109.54769 * 274.56102 * 17 16 14 19 19 C 1.53088 * 109.16278 * 183.15141 * 18 17 16 20 20 O 1.42899 * 109.41554 * 57.60730 * 19 18 17 21 21 C 1.42897 * 114.09860 * 298.83662 * 20 19 18 22 22 C 1.53091 * 109.41288 * 61.16432 * 21 20 19 23 23 H 0.97000 * 120.00058 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47462 * 59.99624 * 9 7 2 25 25 H 1.09001 * 109.47503 * 299.99203 * 9 7 2 26 26 H 1.08995 * 109.46737 * 59.99327 * 10 9 7 27 27 H 1.09001 * 109.46469 * 300.00172 * 10 9 7 28 28 H 1.00901 * 111.00088 * 300.00693 * 13 11 10 29 29 H 1.00898 * 111.00134 * 63.95809 * 13 11 10 30 30 H 0.97000 * 120.00317 * 0.28382 * 16 14 11 31 31 H 1.09004 * 109.53842 * 34.82745 * 17 16 14 32 32 H 1.08995 * 109.51546 * 303.06015 * 18 17 16 33 33 H 1.08999 * 109.52096 * 63.24219 * 18 17 16 34 34 H 1.09002 * 109.48022 * 297.62261 * 19 18 17 35 35 H 1.09002 * 109.47713 * 177.58917 * 19 18 17 36 36 H 1.09000 * 109.48518 * 301.17839 * 21 20 19 37 37 H 1.09000 * 109.49046 * 181.14776 * 21 20 19 38 38 H 1.09005 * 109.52310 * 182.48334 * 22 21 20 39 39 H 1.08999 * 109.52638 * 62.29286 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 1 0.7879 -5.0072 -0.8404 13 7 0.7290 -5.1181 1.2567 14 6 2.4549 -6.1298 -0.1227 15 8 2.7871 -6.7531 0.8633 16 7 2.9530 -6.4628 -1.3299 17 6 3.8958 -7.5775 -1.4512 18 6 5.3179 -7.0782 -1.1773 19 6 6.3037 -8.2312 -1.3832 20 8 6.1710 -8.7378 -2.7128 21 6 4.8755 -9.2620 -3.0109 22 6 3.8322 -8.1504 -2.8704 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8904 27 1 2.8719 -3.6043 -0.8895 28 1 1.3491 -5.1021 2.0525 29 1 0.0242 -4.4001 1.3330 30 1 2.6874 -5.9643 -2.1185 31 1 3.6360 -8.3546 -0.7323 32 1 5.5575 -6.2668 -1.8644 33 1 5.3864 -6.7193 -0.1503 34 1 6.0886 -9.0254 -0.6684 35 1 7.3212 -7.8709 -1.2314 36 1 4.6417 -10.0697 -2.3173 37 1 4.8639 -9.6444 -4.0315 38 1 2.8383 -8.5584 -3.0543 39 1 4.0420 -7.3606 -3.5917 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691565198.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:47 Heat of formation + Delta-G solvation = -132.033582 kcal Electronic energy + Delta-G solvation = -19300.317510 eV Core-core repulsion = 16240.688654 eV Total energy + Delta-G solvation = -3059.628856 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.28260 -39.90788 -37.17617 -36.22377 -34.84674 -32.61080 -32.10275 -31.69407 -28.32058 -26.29983 -24.70031 -24.60283 -22.38447 -21.52806 -21.00300 -18.89964 -18.11948 -17.83157 -16.99188 -16.67563 -16.47395 -16.06600 -16.00569 -15.69597 -15.38871 -14.91522 -14.77995 -14.49045 -14.30727 -13.94519 -13.46694 -13.33060 -12.96503 -12.70934 -12.61004 -12.49138 -12.33379 -11.96196 -11.82395 -11.73646 -11.42646 -11.29706 -10.89865 -10.57694 -10.52990 -10.10961 -9.65562 -8.22591 -6.32912 1.38021 1.39724 1.51305 1.59424 2.08448 2.39228 2.93816 3.11264 3.61883 3.72877 3.77073 3.82494 3.98310 4.07736 4.11869 4.23698 4.25787 4.43795 4.54824 4.65068 4.68738 4.76600 4.81248 4.84141 5.02909 5.05771 5.07397 5.17765 5.45484 5.47473 5.64382 5.79669 6.05952 6.20259 6.21574 6.46062 6.52373 6.82724 7.22046 7.36448 8.88377 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.027585 B = 0.004095 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.801466 B = 6835.941930 C = 7370.346681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.029 3.971 10 C -0.120 4.120 11 C 0.080 3.920 12 H 0.110 0.890 13 N -0.830 5.830 14 C 0.528 3.472 15 O -0.571 6.571 16 N -0.715 5.715 17 C 0.142 3.858 18 C -0.165 4.165 19 C 0.067 3.933 20 O -0.398 6.398 21 C 0.061 3.939 22 C -0.156 4.156 23 H 0.264 0.736 24 H 0.003 0.997 25 H 0.003 0.997 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.343 0.657 29 H 0.352 0.648 30 H 0.413 0.587 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.456 -16.555 -7.014 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.160 4.160 11 C -0.035 4.035 12 H 0.128 0.872 13 N -0.361 5.361 14 C 0.315 3.685 15 O -0.449 6.449 16 N -0.367 5.367 17 C 0.038 3.962 18 C -0.204 4.204 19 C -0.010 4.010 20 O -0.317 6.317 21 C -0.016 4.016 22 C -0.194 4.194 23 H 0.073 0.927 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.156 0.844 29 H 0.167 0.833 30 H 0.249 0.751 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.137 0.863 38 H 0.113 0.887 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.456 -17.615 -6.730 20.666 hybrid contribution 0.128 2.410 0.350 2.438 sum 8.584 -15.205 -6.379 18.590 Atomic orbital electron populations 1.70063 1.07475 1.27715 1.51391 1.25854 0.95722 1.02950 0.94729 0.85495 0.79007 0.79301 0.77825 1.19038 1.20233 1.20537 1.21644 0.93323 0.92480 1.50801 0.92789 1.18980 0.94042 0.92003 0.95764 1.22119 0.98754 0.93780 1.01304 1.21419 0.94798 0.91323 0.95953 0.87241 1.58764 1.18385 1.55635 1.03348 1.20725 0.80647 0.84015 0.83133 1.90614 1.61491 1.54458 1.38358 1.45986 1.46378 1.34936 1.09420 1.21028 0.88048 0.88562 0.98607 1.22573 0.95482 1.00089 1.02228 1.22577 0.99980 0.94557 0.83882 1.87920 1.32572 1.79965 1.31221 1.22725 0.81430 0.94284 1.03165 1.22474 1.01817 1.00417 0.94649 0.92714 0.97891 0.97917 0.93863 0.91632 0.84377 0.83255 0.75062 0.90927 0.90800 0.92245 0.92434 0.87509 0.92225 0.86327 0.88686 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.09 13.29 21.45 0.28 -53.81 16 2 C 0.01 0.33 5.46 84.65 0.46 0.79 16 3 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.54 -29.81 9.11 25.60 0.23 -29.57 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 9 C 0.03 1.43 4.74 29.85 0.14 1.57 16 10 C -0.12 -4.62 4.78 30.60 0.15 -4.48 16 11 C 0.08 2.66 3.21 44.17 0.14 2.80 16 12 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 13 N -0.83 -28.51 8.94 -171.82 -1.54 -30.04 16 14 C 0.53 16.79 7.05 87.66 0.62 17.41 16 15 O -0.57 -21.78 15.91 -3.04 -0.05 -21.83 16 16 N -0.72 -17.12 5.08 -441.95 -2.25 -19.37 16 17 C 0.14 3.01 2.54 45.11 0.11 3.13 16 18 C -0.16 -3.55 5.72 30.69 0.18 -3.37 16 19 C 0.07 1.21 6.84 72.01 0.49 1.70 16 20 O -0.40 -7.54 10.76 -148.98 -1.60 -9.14 16 21 C 0.06 0.84 6.84 72.01 0.49 1.33 16 22 C -0.16 -2.28 5.61 30.68 0.17 -2.11 16 23 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 24 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 25 H 0.00 0.13 6.87 -2.39 -0.02 0.11 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.34 12.08 8.58 -89.69 -0.77 11.31 16 29 H 0.35 12.26 7.55 -89.70 -0.68 11.59 16 30 H 0.41 8.06 8.61 -92.71 -0.80 7.26 16 31 H 0.07 1.79 7.58 -2.38 -0.02 1.77 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 35 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -66.53 319.68 -1.12 -67.65 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: -1.18 Total: 32.09 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 3.19 Total: -10.80 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -3.50 Total: -103.22 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -1.65 Total: -30.97 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -66.53 -1.12 -67.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691565198.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.383 kcal (2) G-P(sol) polarization free energy of solvation -66.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds