Wall clock time and date at job start Mon Mar 30 2020 04:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00103 * 2 1 4 4 C 1.53006 * 115.54842 * 34.32961 * 3 2 1 5 5 C 1.53000 * 117.50217 * 248.62551 * 3 2 1 6 6 C 1.52998 * 60.00051 * 252.51091 * 5 3 2 7 7 H 1.08997 * 117.51450 * 252.52324 * 6 5 3 8 8 N 1.46499 * 117.50117 * 107.48846 * 6 5 3 9 9 C 1.34777 * 119.99665 * 136.65692 * 8 6 5 10 10 O 1.21283 * 119.99990 * 359.71991 * 9 8 6 11 11 C 1.50698 * 119.99538 * 179.72653 * 9 8 6 12 12 H 1.08994 * 109.47374 * 39.99639 * 11 9 8 13 13 N 1.46899 * 109.46954 * 159.99915 * 11 9 8 14 14 C 1.53003 * 109.47045 * 279.99176 * 11 9 8 15 15 C 1.53000 * 109.47286 * 174.99954 * 14 11 9 16 16 C 1.50701 * 109.47289 * 180.02562 * 15 14 11 17 17 H 1.08003 * 119.99592 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99954 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99592 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00097 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47034 * 89.99894 * 20 18 16 22 22 H 1.48491 * 109.47029 * 209.99874 * 20 18 16 23 23 H 1.48498 * 109.46964 * 330.00019 * 20 18 16 24 24 H 1.08998 * 109.46962 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46837 * 299.99763 * 1 2 3 26 26 H 1.09000 * 109.47013 * 60.00074 * 1 2 3 27 27 H 1.09000 * 109.46862 * 205.66945 * 4 3 2 28 28 H 1.08999 * 109.47017 * 325.67310 * 4 3 2 29 29 H 1.09000 * 109.46963 * 85.66758 * 4 3 2 30 30 H 1.08995 * 117.50029 * 145.01918 * 5 3 2 31 31 H 1.09004 * 117.49527 * 359.97438 * 5 3 2 32 32 H 0.97001 * 119.99790 * 316.37404 * 8 6 5 33 33 H 1.00900 * 110.99932 * 296.04066 * 13 11 9 34 34 H 1.00903 * 111.00374 * 59.99775 * 13 11 9 35 35 H 1.08994 * 109.47574 * 295.00663 * 14 11 9 36 36 H 1.09004 * 109.46944 * 55.00483 * 14 11 9 37 37 H 1.08994 * 109.47393 * 300.00821 * 15 14 11 38 38 H 1.09004 * 109.46697 * 60.00377 * 15 14 11 39 39 H 0.97005 * 119.99751 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.2373 2.3719 0.7785 5 6 2.7495 1.7497 -1.2638 6 6 3.5374 1.3988 -0.0001 7 1 3.9914 2.2200 0.5546 8 7 4.2919 0.1430 -0.0001 9 6 5.5437 0.1090 0.4983 10 8 6.0473 1.1191 0.9422 11 6 6.3175 -1.1842 0.5038 12 1 6.1351 -1.7207 -0.4272 13 7 7.7523 -0.8956 0.6297 14 6 5.8647 -2.0443 1.6854 15 6 6.5586 -3.4064 1.6202 16 6 6.1122 -4.2538 2.7837 17 1 5.4040 -3.8604 3.4979 18 6 6.6079 -5.5313 2.9363 19 7 6.2179 -6.2710 3.9513 20 14 7.8333 -6.2115 1.7013 21 1 9.2136 -5.8900 2.1451 22 1 7.6744 -7.6848 1.6064 23 1 7.5862 -5.6001 0.3708 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.4657 3.3565 0.3705 28 1 0.1676 2.1816 0.6912 29 1 1.5279 2.3374 1.8285 30 1 2.6852 2.8019 -1.5408 31 1 2.7928 1.0460 -2.0951 32 1 3.8890 -0.6648 -0.3551 33 1 8.0897 -0.3832 -0.1713 34 1 7.9474 -0.3981 1.4856 35 1 6.1277 -1.5468 2.6189 36 1 4.7847 -2.1843 1.6401 37 1 6.2957 -3.9038 0.6868 38 1 7.6387 -3.2663 1.6655 39 1 6.5664 -7.1699 4.0585 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694363194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:07 Heat of formation + Delta-G solvation = -61.191015 kcal Electronic energy + Delta-G solvation = -19197.890370 eV Core-core repulsion = 16141.333479 eV Total energy + Delta-G solvation = -3056.556892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.16726 -38.95039 -35.89610 -35.20015 -32.93288 -32.70333 -30.45258 -28.96280 -26.95397 -26.62879 -23.95831 -21.92664 -20.65992 -20.41547 -19.82853 -17.47154 -17.19593 -16.59901 -15.79706 -15.56957 -15.43323 -14.99909 -14.43870 -14.11703 -14.08557 -13.69230 -13.50957 -13.39895 -12.58352 -12.46131 -12.30978 -12.26335 -11.77190 -11.62790 -11.51054 -11.02380 -10.93160 -10.83746 -10.35091 -9.96216 -9.67778 -9.56076 -9.49063 -9.07344 -8.78027 -8.48061 -8.36411 -5.95752 -3.92971 2.60106 3.01914 3.34902 3.40488 3.46657 3.52589 3.60828 4.39586 4.49571 4.54784 4.64325 4.77973 4.97743 5.06488 5.11687 5.22844 5.32530 5.38686 5.38989 5.44098 5.44616 5.48780 5.69960 5.72381 5.73190 6.35091 6.42690 6.53321 6.93052 6.93591 7.28029 7.43066 7.55244 7.62519 7.69583 7.90279 8.26594 8.62373 9.09392 9.67404 11.17855 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.004650 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.516499 B = 6019.626092 C = 6788.189673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.029 3.971 4 C -0.145 4.145 5 C -0.208 4.208 6 C 0.108 3.892 7 H 0.141 0.859 8 N -0.694 5.694 9 C 0.488 3.512 10 O -0.554 6.554 11 C 0.076 3.924 12 H 0.099 0.901 13 N -0.810 5.810 14 C -0.088 4.088 15 C -0.004 4.004 16 C -0.520 4.520 17 H 0.069 0.931 18 C 0.065 3.935 19 N -0.907 5.907 20 Si 0.883 3.117 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.264 1.264 24 H 0.090 0.910 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.410 0.590 33 H 0.335 0.665 34 H 0.350 0.650 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.013 0.987 38 H 0.029 0.971 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.141 16.863 -11.694 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.265 6.265 3 C -0.012 4.012 4 C -0.202 4.202 5 C -0.247 4.247 6 C 0.000 4.000 7 H 0.159 0.841 8 N -0.345 5.345 9 C 0.275 3.725 10 O -0.431 6.431 11 C -0.039 4.039 12 H 0.117 0.883 13 N -0.338 5.338 14 C -0.126 4.126 15 C -0.042 4.042 16 C -0.558 4.558 17 H 0.087 0.913 18 C -0.135 4.135 19 N -0.547 5.547 20 Si 0.710 3.290 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.189 1.189 24 H 0.108 0.892 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.246 0.754 33 H 0.147 0.853 34 H 0.164 0.836 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.031 0.969 38 H 0.048 0.952 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.506 16.415 -11.273 22.066 hybrid contribution -0.233 0.368 -0.825 0.933 sum -9.739 16.784 -12.098 22.867 Atomic orbital electron populations 1.22833 0.80742 1.03073 1.00132 1.87911 1.20142 1.24103 1.94309 1.22487 0.93092 0.85911 0.99749 1.21818 1.00466 0.97140 1.00792 1.24250 1.04230 1.02754 0.93478 1.22027 0.87405 0.90332 1.00217 0.84138 1.45462 1.15104 1.11052 1.62835 1.22699 0.81507 0.92771 0.75560 1.90637 1.69316 1.36423 1.46760 1.21857 0.87709 0.91254 1.03125 0.88345 1.59041 1.12043 1.54595 1.08165 1.21476 1.00014 0.96935 0.94162 1.19485 0.96744 0.90954 0.96984 1.21191 1.26589 0.98347 1.09665 0.91298 1.25013 0.96326 0.96883 0.95304 1.69929 1.44763 1.09907 1.30067 0.86729 0.81973 0.77567 0.82695 1.20295 1.21747 1.18897 0.89184 0.93327 0.93938 0.90857 0.90918 0.90936 0.87662 0.87871 0.75396 0.85325 0.83595 0.92231 0.92003 0.96892 0.95246 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.05 101.05 1.02 1.25 16 2 O -0.35 -4.02 10.39 -35.23 -0.37 -4.39 16 3 C 0.03 0.30 3.03 -90.62 -0.27 0.02 16 4 C -0.14 -1.13 9.49 37.16 0.35 -0.77 16 5 C -0.21 -1.91 10.05 -26.73 -0.27 -2.18 16 6 C 0.11 1.27 6.15 -67.93 -0.42 0.85 16 7 H 0.14 1.75 7.40 -51.93 -0.38 1.36 16 8 N -0.69 -9.31 5.47 -53.81 -0.29 -9.60 16 9 C 0.49 7.71 7.07 -10.99 -0.08 7.63 16 10 O -0.55 -10.05 15.82 5.55 0.09 -9.96 16 11 C 0.08 1.24 3.15 -68.86 -0.22 1.03 16 12 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 13 N -0.81 -12.96 8.44 -5.66 -0.05 -13.01 16 14 C -0.09 -1.75 4.78 -26.73 -0.13 -1.88 16 15 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 16 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 17 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 20 Si 0.88 22.31 27.47 -169.99 -4.67 17.65 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 23 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.36 6.47 -51.93 -0.34 0.02 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.46 7.90 -51.93 -0.41 0.05 16 28 H 0.07 0.48 5.78 -51.93 -0.30 0.18 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.11 0.77 8.05 -51.93 -0.42 0.35 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.41 5.14 8.39 -40.82 -0.34 4.80 16 33 H 0.33 4.60 9.06 -39.29 -0.36 4.24 16 34 H 0.35 5.72 8.58 -39.29 -0.34 5.38 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 38 H 0.03 0.72 7.18 -51.93 -0.37 0.35 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 324.42 15.07 4.89 4.89 Total: -1.00 -33.84 324.42 -6.36 -40.20 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -6.18 Total: 9.81 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -0.56 Total: -7.84 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.43 Total: -50.36 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.28 Total: -14.35 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.84 -6.36 -40.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694363194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.991 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds