Wall clock time and date at job start Mon Mar 30 2020 04:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00103 * 2 1 4 4 C 1.53006 * 115.54842 * 34.32961 * 3 2 1 5 5 C 1.53000 * 117.50217 * 248.62551 * 3 2 1 6 6 C 1.52998 * 60.00051 * 252.51091 * 5 3 2 7 7 H 1.08997 * 117.51450 * 252.52324 * 6 5 3 8 8 N 1.46499 * 117.50117 * 107.48846 * 6 5 3 9 9 C 1.34777 * 119.99665 * 136.65692 * 8 6 5 10 10 O 1.21283 * 119.99990 * 359.71991 * 9 8 6 11 11 C 1.50698 * 119.99538 * 179.72653 * 9 8 6 12 12 H 1.08994 * 109.47374 * 39.99639 * 11 9 8 13 13 N 1.46899 * 109.46954 * 159.99915 * 11 9 8 14 14 C 1.53003 * 109.47045 * 279.99176 * 11 9 8 15 15 C 1.53000 * 109.47286 * 174.99954 * 14 11 9 16 16 C 1.50701 * 109.47289 * 180.02562 * 15 14 11 17 17 H 1.08003 * 119.99592 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99954 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99592 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00097 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47034 * 89.99894 * 20 18 16 22 22 H 1.48491 * 109.47029 * 209.99874 * 20 18 16 23 23 H 1.48498 * 109.46964 * 330.00019 * 20 18 16 24 24 H 1.08998 * 109.46962 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46837 * 299.99763 * 1 2 3 26 26 H 1.09000 * 109.47013 * 60.00074 * 1 2 3 27 27 H 1.09000 * 109.46862 * 205.66945 * 4 3 2 28 28 H 1.08999 * 109.47017 * 325.67310 * 4 3 2 29 29 H 1.09000 * 109.46963 * 85.66758 * 4 3 2 30 30 H 1.08995 * 117.50029 * 145.01918 * 5 3 2 31 31 H 1.09004 * 117.49527 * 359.97438 * 5 3 2 32 32 H 0.97001 * 119.99790 * 316.37404 * 8 6 5 33 33 H 1.00900 * 110.99932 * 296.04066 * 13 11 9 34 34 H 1.00903 * 111.00374 * 59.99775 * 13 11 9 35 35 H 1.08994 * 109.47574 * 295.00663 * 14 11 9 36 36 H 1.09004 * 109.46944 * 55.00483 * 14 11 9 37 37 H 1.08994 * 109.47393 * 300.00821 * 15 14 11 38 38 H 1.09004 * 109.46697 * 60.00377 * 15 14 11 39 39 H 0.97005 * 119.99751 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.2373 2.3719 0.7785 5 6 2.7495 1.7497 -1.2638 6 6 3.5374 1.3988 -0.0001 7 1 3.9914 2.2200 0.5546 8 7 4.2919 0.1430 -0.0001 9 6 5.5437 0.1090 0.4983 10 8 6.0473 1.1191 0.9422 11 6 6.3175 -1.1842 0.5038 12 1 6.1351 -1.7207 -0.4272 13 7 7.7523 -0.8956 0.6297 14 6 5.8647 -2.0443 1.6854 15 6 6.5586 -3.4064 1.6202 16 6 6.1122 -4.2538 2.7837 17 1 5.4040 -3.8604 3.4979 18 6 6.6079 -5.5313 2.9363 19 7 6.2179 -6.2710 3.9513 20 14 7.8333 -6.2115 1.7013 21 1 9.2136 -5.8900 2.1451 22 1 7.6744 -7.6848 1.6064 23 1 7.5862 -5.6001 0.3708 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.4657 3.3565 0.3705 28 1 0.1676 2.1816 0.6912 29 1 1.5279 2.3374 1.8285 30 1 2.6852 2.8019 -1.5408 31 1 2.7928 1.0460 -2.0951 32 1 3.8890 -0.6648 -0.3551 33 1 8.0897 -0.3832 -0.1713 34 1 7.9474 -0.3981 1.4856 35 1 6.1277 -1.5468 2.6189 36 1 4.7847 -2.1843 1.6401 37 1 6.2957 -3.9038 0.6868 38 1 7.6387 -3.2663 1.6655 39 1 6.5664 -7.1699 4.0585 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694363194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:07 Heat of formation + Delta-G solvation = -88.283215 kcal Electronic energy + Delta-G solvation = -19199.065176 eV Core-core repulsion = 16141.333479 eV Total energy + Delta-G solvation = -3057.731698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25604 -39.90740 -36.99782 -36.53273 -34.78866 -33.92734 -32.29217 -29.67848 -28.40869 -27.47627 -25.54554 -23.05888 -22.04287 -21.48780 -21.11306 -19.00488 -18.31025 -18.24687 -17.05572 -16.51258 -16.35826 -16.18887 -15.88660 -15.69806 -15.17723 -14.84273 -14.66533 -14.51550 -14.14626 -13.95941 -13.55637 -13.07929 -12.95909 -12.82305 -12.58248 -12.46837 -12.26221 -11.96074 -11.79918 -11.73723 -11.61462 -11.29463 -11.14834 -10.70809 -10.27921 -9.77707 -9.65665 -8.24589 -6.27963 1.39393 1.42155 1.43338 1.56390 2.00858 2.42096 2.53339 2.82263 3.12007 3.50972 3.64755 3.69471 3.80059 3.96114 4.07177 4.25494 4.39833 4.49540 4.53801 4.68765 4.70471 4.75983 4.79241 4.81912 4.86118 4.90360 5.13487 5.13778 5.40809 5.50018 5.65457 5.72461 6.05026 6.21518 6.32937 6.41591 6.52403 6.80285 7.09260 7.36463 8.92511 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.004650 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.516499 B = 6019.626092 C = 6788.189673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.376 6.376 3 C 0.030 3.970 4 C -0.144 4.144 5 C -0.184 4.184 6 C 0.074 3.926 7 H 0.130 0.870 8 N -0.685 5.685 9 C 0.491 3.509 10 O -0.581 6.581 11 C 0.086 3.914 12 H 0.119 0.881 13 N -0.816 5.816 14 C -0.079 4.079 15 C 0.003 3.997 16 C -0.533 4.533 17 H 0.026 0.974 18 C 0.003 3.997 19 N -0.955 5.955 20 Si 0.955 3.045 21 H -0.271 1.271 22 H -0.286 1.286 23 H -0.242 1.242 24 H 0.093 0.907 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.415 0.585 33 H 0.350 0.650 34 H 0.346 0.654 35 H 0.040 0.960 36 H 0.061 0.939 37 H 0.023 0.977 38 H 0.029 0.971 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.269 17.717 -14.247 24.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.294 6.294 3 C -0.011 4.011 4 C -0.201 4.201 5 C -0.222 4.222 6 C -0.033 4.033 7 H 0.148 0.852 8 N -0.335 5.335 9 C 0.276 3.724 10 O -0.461 6.461 11 C -0.030 4.030 12 H 0.137 0.863 13 N -0.345 5.345 14 C -0.117 4.117 15 C -0.034 4.034 16 C -0.571 4.571 17 H 0.045 0.955 18 C -0.193 4.193 19 N -0.597 5.597 20 Si 0.778 3.222 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.165 1.165 24 H 0.111 0.889 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.123 0.877 32 H 0.251 0.749 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.048 0.952 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.673 17.292 -13.856 24.178 hybrid contribution -0.312 0.126 0.046 0.340 sum -9.985 17.418 -13.810 24.368 Atomic orbital electron populations 1.23006 0.79195 1.03772 1.01333 1.87856 1.21943 1.25108 1.94524 1.22640 0.91867 0.86096 1.00525 1.21865 1.00996 0.97321 0.99939 1.24280 1.01417 1.04141 0.92381 1.22211 0.88570 0.89478 1.03002 0.85195 1.45372 1.14354 1.12018 1.61713 1.22452 0.82148 0.92092 0.75658 1.90625 1.70069 1.37181 1.48217 1.21642 0.88108 0.91203 1.02000 0.86285 1.59022 1.11747 1.55007 1.08768 1.21249 0.99662 0.95560 0.95240 1.19366 0.96841 0.92147 0.95057 1.21562 1.25716 0.99285 1.10499 0.95520 1.26017 0.98566 0.97244 0.97493 1.70085 1.46601 1.10553 1.32412 0.85585 0.78974 0.76938 0.80654 1.19582 1.21211 1.16526 0.88875 0.92511 0.92294 0.89005 0.89494 0.91947 0.85255 0.87727 0.74887 0.83678 0.83991 0.94100 0.92062 0.95831 0.95232 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.05 113.37 1.14 1.47 16 2 O -0.38 -8.20 10.39 -148.98 -1.55 -9.75 16 3 C 0.03 0.56 3.03 -10.79 -0.03 0.53 16 4 C -0.14 -1.95 9.49 71.98 0.68 -1.27 16 5 C -0.18 -2.92 10.05 30.59 0.31 -2.61 16 6 C 0.07 1.66 6.15 44.99 0.28 1.94 16 7 H 0.13 3.18 7.40 -2.39 -0.02 3.17 16 8 N -0.69 -17.71 5.47 -442.54 -2.42 -20.13 16 9 C 0.49 15.09 7.07 87.66 0.62 15.71 16 10 O -0.58 -20.88 15.82 -3.04 -0.05 -20.93 16 11 C 0.09 2.69 3.15 44.17 0.14 2.83 16 12 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 13 N -0.82 -24.90 8.44 -171.81 -1.45 -26.35 16 14 C -0.08 -3.13 4.78 30.60 0.15 -2.99 16 15 C 0.00 0.16 3.93 29.85 0.12 0.28 16 16 C -0.53 -31.52 9.66 25.60 0.25 -31.27 16 17 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 18 C 0.00 0.17 5.47 84.66 0.46 0.64 16 19 N -0.96 -61.37 13.96 21.45 0.30 -61.07 16 20 Si 0.96 45.46 27.47 68.60 1.88 47.34 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 23 H -0.24 -10.57 6.54 99.48 0.65 -9.92 16 24 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 0.73 6.47 -2.39 -0.02 0.71 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.09 0.89 7.90 -2.39 -0.02 0.87 16 28 H 0.09 0.92 5.78 -2.39 -0.01 0.91 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.13 1.44 8.05 -2.39 -0.02 1.42 16 31 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.41 9.90 8.39 -92.71 -0.78 9.12 16 33 H 0.35 8.92 9.06 -89.69 -0.81 8.10 16 34 H 0.35 11.09 8.58 -89.69 -0.77 10.32 16 35 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 37 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 38 H 0.03 1.40 7.18 -2.38 -0.02 1.39 16 39 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 Total: -1.00 -73.73 324.42 -0.52 -74.25 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -1.34 Total: 31.38 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 4.11 Total: -14.74 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -3.57 Total: -107.55 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.60 Total: -30.68 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -73.73 -0.52 -74.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694363194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.030 kcal (2) G-P(sol) polarization free energy of solvation -73.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds