Wall clock time and date at job start Mon Mar 30 2020 04:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99981 * 2 1 4 4 H 1.48500 * 109.46695 * 274.11935 * 3 2 1 5 5 H 1.48499 * 109.46959 * 34.12231 * 3 2 1 6 6 H 1.48500 * 109.47125 * 154.11801 * 3 2 1 7 7 C 1.38814 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99572 * 197.15356 * 7 2 1 9 9 N 1.36939 * 120.00167 * 17.15131 * 7 2 1 10 10 C 1.47080 * 120.88071 * 206.96664 * 9 7 2 11 11 C 1.53242 * 108.52044 * 231.20874 * 10 9 7 12 12 N 1.46899 * 109.33714 * 306.17155 * 11 10 9 13 13 C 1.46908 * 110.99954 * 187.25335 * 12 11 10 14 14 H 1.08996 * 109.51819 * 55.00095 * 13 12 11 15 15 C 1.53088 * 109.56995 * 294.84530 * 13 12 11 16 16 O 1.42913 * 109.41065 * 182.45219 * 15 13 12 17 17 C 1.42896 * 114.09628 * 61.15654 * 16 15 13 18 18 C 1.53091 * 109.41745 * 298.84258 * 17 16 15 19 19 C 1.53176 * 109.16511 * 57.60992 * 18 17 16 20 20 H 1.09000 * 109.53987 * 62.88425 * 19 18 17 21 21 O 1.42899 * 109.61773 * 183.10900 * 19 18 17 22 22 C 1.46902 * 111.26914 * 63.10646 * 12 11 10 23 23 C 1.47077 * 120.87999 * 26.99336 * 9 7 2 24 24 H 0.97000 * 120.00079 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.62639 * 111.50233 * 10 9 7 26 26 H 1.09003 * 109.79016 * 351.01170 * 10 9 7 27 27 H 1.08995 * 109.48859 * 186.21514 * 11 10 9 28 28 H 1.08998 * 109.49151 * 66.12805 * 11 10 9 29 29 H 1.08996 * 109.48396 * 302.43299 * 15 13 12 30 30 H 1.08999 * 109.48335 * 62.47216 * 15 13 12 31 31 H 1.09001 * 109.47901 * 178.85450 * 17 16 15 32 32 H 1.09007 * 109.49084 * 58.83151 * 17 16 15 33 33 H 1.09000 * 109.52124 * 297.70011 * 18 17 16 34 34 H 1.09008 * 109.57299 * 177.54671 * 18 17 16 35 35 H 0.96690 * 113.99774 * 299.60046 * 21 19 18 36 36 H 1.09001 * 109.49280 * 56.85876 * 22 12 11 37 37 H 1.09005 * 109.48909 * 176.92923 * 22 12 11 38 38 H 1.09001 * 109.62777 * 248.50636 * 23 9 7 39 39 H 1.09003 * 109.62976 * 8.88666 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4106 2.0966 -1.3965 5 1 1.4939 2.6259 0.7854 6 1 3.5886 1.4166 0.6112 7 6 2.0103 -1.2022 0.0005 8 1 3.0543 -1.2228 0.2764 9 7 1.3713 -2.3619 -0.3487 10 6 1.8255 -3.6603 0.1720 11 6 2.0054 -4.6218 -1.0076 12 7 0.7643 -4.6668 -1.7921 13 6 0.8350 -5.7039 -2.8303 14 1 1.0764 -6.6626 -2.3715 15 6 1.9175 -5.3369 -3.8487 16 8 1.9446 -6.3181 -4.8874 17 6 0.7237 -6.4234 -5.6224 18 6 -0.4068 -6.8338 -4.6752 19 6 -0.5155 -5.8045 -3.5461 20 1 -0.7806 -4.8328 -3.9628 21 8 -1.5198 -6.2162 -2.6166 22 6 0.4563 -3.3554 -2.3782 23 6 0.2129 -2.3422 -1.2548 24 1 -0.4850 0.8400 -0.0004 25 1 1.0802 -4.0600 0.8597 26 1 2.7754 -3.5374 0.6923 27 1 2.2348 -5.6190 -0.6322 28 1 2.8225 -4.2735 -1.6394 29 1 1.6969 -4.3595 -4.2776 30 1 2.8877 -5.3058 -3.3527 31 1 0.8337 -7.1748 -6.4043 32 1 0.4872 -5.4602 -6.0747 33 1 -0.1905 -7.8155 -4.2538 34 1 -1.3476 -6.8726 -5.2246 35 1 -2.4021 -6.3008 -3.0028 36 1 1.2950 -3.0249 -2.9909 37 1 -0.4376 -3.4344 -2.9969 38 1 -0.6873 -2.6150 -0.7041 39 1 0.0953 -1.3442 -1.6771 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695803680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:55 Heat of formation + Delta-G solvation = -55.821717 kcal Electronic energy + Delta-G solvation = -20602.370954 eV Core-core repulsion = 17546.046893 eV Total energy + Delta-G solvation = -3056.324061 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.10943 -37.56341 -36.46574 -34.39426 -31.83631 -31.42850 -29.98029 -29.18502 -26.01828 -24.61472 -23.56864 -22.81474 -22.07521 -20.08286 -18.78586 -17.36708 -16.87977 -16.32390 -15.99370 -15.24087 -15.05316 -14.53195 -14.23141 -13.80138 -13.61169 -13.46210 -13.18710 -13.04417 -12.76502 -12.46747 -12.03976 -11.55670 -11.42048 -11.12764 -10.97473 -10.76378 -10.63914 -10.35660 -10.25495 -10.05798 -9.88904 -9.79353 -9.63645 -9.51906 -8.48701 -7.67787 -6.63760 -5.76356 -3.17676 3.38310 3.45401 3.46969 3.69591 4.17498 4.31181 4.51545 4.66976 4.78787 4.86917 5.04261 5.15681 5.35539 5.39317 5.41056 5.51156 5.57762 5.60128 5.71085 5.87002 5.91753 6.00727 6.08604 6.18911 6.22239 6.35716 6.56072 6.71354 6.97725 7.02417 7.26520 7.61154 7.67531 7.72679 7.78416 7.84123 8.45387 9.23143 9.86584 10.45799 11.32470 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.005567 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.271401 B = 5028.006718 C = 5136.729624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.041 3.959 12 N -0.509 5.509 13 C 0.060 3.940 14 H 0.090 0.910 15 C 0.030 3.970 16 O -0.382 6.382 17 C 0.062 3.938 18 C -0.189 4.189 19 C 0.112 3.888 20 H 0.058 0.942 21 O -0.543 6.543 22 C 0.029 3.971 23 C 0.180 3.820 24 H 0.253 0.747 25 H 0.026 0.974 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.029 0.971 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.369 0.631 36 H 0.025 0.975 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 -12.239 -10.513 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.089 4.089 12 N -0.234 5.234 13 C -0.050 4.050 14 H 0.108 0.892 15 C -0.048 4.048 16 O -0.300 6.300 17 C -0.015 4.015 18 C -0.227 4.227 19 C 0.052 3.948 20 H 0.076 0.924 21 O -0.347 6.347 22 C -0.100 4.100 23 C 0.054 3.946 24 H 0.063 0.937 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.214 0.786 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.636 -12.302 -9.783 15.730 hybrid contribution 0.285 1.215 -0.965 1.577 sum -0.351 -11.087 -10.747 15.445 Atomic orbital electron populations 1.70043 1.05206 1.25399 1.54124 1.25031 0.95290 0.98340 1.01070 0.86275 0.79168 0.83818 0.77534 1.21580 1.21760 1.20411 1.19222 0.92624 0.84806 1.41444 0.91617 1.44117 1.34766 1.01310 1.51631 1.20967 0.97838 0.86392 0.92554 1.22683 0.89604 0.99654 0.96915 1.62124 1.34356 1.05116 1.21810 1.22345 0.92474 0.97972 0.92172 0.89213 1.23434 1.00949 0.91703 0.88741 1.87919 1.34566 1.59431 1.48038 1.22523 0.84308 1.01054 0.93622 1.23004 0.99916 1.01481 0.98329 1.21854 0.89040 0.95522 0.88381 0.92393 1.86697 1.19410 1.90865 1.37691 1.23003 0.98425 0.89659 0.98882 1.20825 0.89193 0.96268 0.88325 0.93662 0.95559 0.92585 0.91885 0.95315 0.92491 0.88251 0.88734 0.93132 0.90191 0.90608 0.78565 0.95642 0.92158 0.95482 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 11.19 55.49 0.62 -25.88 16 2 C 0.00 0.03 4.93 -17.43 -0.09 -0.05 16 3 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.99 9.63 -15.06 -0.14 -7.14 16 8 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 9 N -0.59 -15.32 3.04 -172.01 -0.52 -15.84 16 10 C 0.15 3.27 6.69 -3.60 -0.02 3.24 16 11 C 0.04 0.75 5.14 -3.70 -0.02 0.73 16 12 N -0.51 -9.39 4.54 -226.18 -1.03 -10.42 16 13 C 0.06 0.92 2.11 -67.57 -0.14 0.78 16 14 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 15 C 0.03 0.43 5.45 37.20 0.20 0.64 16 16 O -0.38 -5.21 10.77 -35.23 -0.38 -5.59 16 17 C 0.06 0.65 6.84 37.20 0.25 0.90 16 18 C -0.19 -1.93 5.77 -26.59 -0.15 -2.09 16 19 C 0.11 1.48 2.74 -26.55 -0.07 1.41 16 20 H 0.06 0.79 6.13 -51.93 -0.32 0.47 16 21 O -0.54 -7.67 13.25 -35.23 -0.47 -8.14 16 22 C 0.03 0.58 4.77 -3.70 -0.02 0.56 16 23 C 0.18 4.43 5.42 -3.61 -0.02 4.41 16 24 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 27 H 0.06 1.03 8.05 -51.93 -0.42 0.61 16 28 H 0.03 0.53 6.88 -51.93 -0.36 0.17 16 29 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 30 H 0.10 1.44 6.83 -51.93 -0.35 1.08 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.37 3.44 9.09 45.56 0.41 3.86 16 36 H 0.03 0.51 6.66 -51.93 -0.35 0.16 16 37 H 0.06 1.10 5.91 -51.93 -0.31 0.79 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 2.34 6.14 -51.93 -0.32 2.02 16 LS Contribution 296.39 15.07 4.47 4.47 Total: -1.00 -31.68 296.39 -7.82 -39.50 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.26 Total: 1.72 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.22 Total: 3.39 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.93 Total: -52.14 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.85 Total: -13.73 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.68 -7.82 -39.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695803680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.322 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds