Wall clock time and date at job start Mon Mar 30 2020 04:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86799 * 119.99898 * 2 1 4 4 H 1.48490 * 109.47231 * 269.99672 * 3 2 1 5 5 H 1.48506 * 109.47101 * 30.00215 * 3 2 1 6 6 H 1.48500 * 109.46770 * 149.99421 * 3 2 1 7 7 C 1.38944 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00461 * 0.02562 * 7 2 1 9 9 N 1.37100 * 119.99813 * 180.02562 * 7 2 1 10 10 C 1.34781 * 119.99966 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00101 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99921 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47353 * 174.61255 * 12 10 9 14 14 C 1.44262 * 111.00174 * 302.87194 * 13 12 10 15 15 C 1.54070 * 111.98327 * 219.30679 * 14 13 12 16 16 C 1.54293 * 112.28832 * 318.91155 * 15 14 13 17 17 C 1.50458 * 113.03023 * 318.30296 * 16 15 14 18 18 C 1.54511 * 108.85173 * 92.15398 * 17 16 15 19 19 H 1.08996 * 109.05614 * 43.35045 * 18 17 16 20 20 C 1.53008 * 109.05489 * 162.26000 * 18 17 16 21 21 O 1.42898 * 109.47256 * 297.08625 * 20 18 17 22 22 C 1.45864 * 111.59280 * 282.80461 * 18 17 16 23 23 H 0.96999 * 120.00461 * 0.02562 * 1 2 3 24 24 H 0.96997 * 119.99962 * 0.02562 * 9 7 2 25 25 H 1.09000 * 109.47368 * 294.61819 * 12 10 9 26 26 H 1.09005 * 109.46903 * 54.61514 * 12 10 9 27 27 H 1.09004 * 108.98077 * 339.94681 * 14 13 12 28 28 H 1.09002 * 108.98447 * 98.65897 * 14 13 12 29 29 H 1.09004 * 108.91776 * 198.18845 * 15 14 13 30 30 H 1.09001 * 108.84437 * 79.58765 * 15 14 13 31 31 H 1.08999 * 108.76915 * 197.38662 * 16 15 14 32 32 H 1.08993 * 108.67596 * 79.15468 * 16 15 14 33 33 H 1.08999 * 109.57774 * 332.34396 * 17 16 15 34 34 H 1.09005 * 109.67675 * 212.02480 * 17 16 15 35 35 H 1.08999 * 109.46815 * 57.08707 * 20 18 17 36 36 H 1.08997 * 109.46840 * 177.08918 * 20 18 17 37 37 H 0.96693 * 113.99843 * 180.02562 * 21 20 18 38 38 H 1.09004 * 108.79153 * 300.44069 * 22 18 17 39 39 H 1.08991 * 108.79664 * 182.21646 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4401 0.7002 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3706 0.0021 11 8 3.4473 -3.4209 0.0021 12 6 5.5607 -2.3705 0.0021 13 7 6.0504 -3.7493 0.1334 14 6 5.5336 -4.3699 1.3287 15 6 6.5904 -5.2480 2.0258 16 6 7.4246 -6.0689 1.0204 17 6 6.5962 -6.6592 -0.0883 18 6 6.5830 -5.6755 -1.2798 19 1 7.5903 -5.2882 -1.4326 20 6 6.1407 -6.4227 -2.5396 21 8 7.0903 -7.4460 -2.8446 22 6 5.6741 -4.5593 -1.0442 23 1 -0.4851 0.8400 -0.0004 24 1 3.8648 -0.3633 0.0014 25 1 5.9241 -1.9433 -0.9325 26 1 5.9240 -1.7747 0.8395 27 1 5.2075 -3.5922 2.0194 28 1 4.6765 -4.9893 1.0645 29 1 6.0868 -5.9321 2.7088 30 1 7.2593 -4.6058 2.5988 31 1 7.9221 -6.8779 1.5554 32 1 8.1831 -5.4194 0.5837 33 1 5.5771 -6.8205 0.2633 34 1 7.0283 -7.6090 -0.4036 35 1 5.1627 -6.8734 -2.3701 36 1 6.0791 -5.7238 -3.3737 37 1 6.8734 -7.9613 -3.6336 38 1 4.6682 -4.9512 -0.8939 39 1 5.6704 -3.9175 -1.9252 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696755759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:38 Heat of formation + Delta-G solvation = -110.784903 kcal Electronic energy + Delta-G solvation = -20046.459677 eV Core-core repulsion = 16987.752233 eV Total energy + Delta-G solvation = -3058.707444 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29733 -39.53782 -37.60651 -36.08371 -34.92072 -33.78894 -33.77228 -29.76805 -27.85873 -26.45897 -25.77066 -23.88346 -21.46359 -21.25707 -20.72378 -19.96531 -18.29663 -17.70886 -17.12327 -16.79668 -16.59979 -15.89097 -15.60362 -15.49305 -15.35774 -14.82049 -14.59009 -14.20507 -14.11641 -13.84133 -13.48926 -13.25553 -13.06251 -12.54292 -12.44079 -12.31842 -12.01124 -11.94821 -11.73401 -11.55301 -11.38667 -11.21362 -11.12259 -10.93142 -10.77431 -10.25664 -9.16616 -8.44270 -6.04800 1.29186 1.33582 1.42983 1.90844 2.20877 2.78377 2.94770 3.13218 3.58871 3.71436 3.97955 4.10485 4.19862 4.25777 4.28960 4.36041 4.39224 4.49727 4.60796 4.68313 4.70651 4.83719 4.87341 4.97739 5.06097 5.17041 5.30709 5.38624 5.39983 5.50808 5.51227 5.57032 5.90824 6.00336 6.11867 6.55778 6.85537 6.92069 7.36631 7.92274 8.73347 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.031398 B = 0.005048 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.548831 B = 5545.304611 C = 5898.176101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.328 4.328 8 H 0.054 0.946 9 N -0.589 5.589 10 C 0.417 3.583 11 O -0.615 6.615 12 C 0.046 3.954 13 N -0.489 5.489 14 C 0.060 3.940 15 C -0.104 4.104 16 C -0.102 4.102 17 C -0.103 4.103 18 C -0.075 4.075 19 H 0.082 0.918 20 C 0.084 3.916 21 O -0.582 6.582 22 C 0.060 3.940 23 H 0.279 0.721 24 H 0.389 0.611 25 H 0.122 0.878 26 H 0.120 0.880 27 H 0.044 0.956 28 H 0.026 0.974 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.053 0.947 37 H 0.396 0.604 38 H 0.031 0.969 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.007 -6.479 -2.037 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.784 3.216 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.457 4.457 8 H 0.072 0.928 9 N -0.230 5.230 10 C 0.204 3.796 11 O -0.500 6.500 12 C -0.086 4.086 13 N -0.210 5.210 14 C -0.070 4.070 15 C -0.142 4.142 16 C -0.140 4.140 17 C -0.141 4.141 18 C -0.094 4.094 19 H 0.100 0.900 20 C 0.005 3.995 21 O -0.390 6.390 22 C -0.068 4.068 23 H 0.088 0.912 24 H 0.225 0.775 25 H 0.140 0.860 26 H 0.138 0.862 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.245 0.755 38 H 0.050 0.950 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.231 -6.824 -1.461 19.521 hybrid contribution -1.937 0.773 -0.543 2.155 sum 16.294 -6.051 -2.004 17.497 Atomic orbital electron populations 1.69807 1.08199 1.29271 1.50236 1.26125 0.96436 1.02751 0.95990 0.85374 0.79512 0.76737 0.79977 1.18106 1.20106 1.15413 1.18999 0.81698 0.94774 1.50271 0.92831 1.42220 1.05813 1.07897 1.67075 1.22282 0.92413 0.83478 0.81397 1.90531 1.71601 1.32198 1.55715 1.22503 0.87205 0.92537 1.06372 1.62088 1.55586 1.00700 1.02618 1.21849 0.95992 0.97359 0.91761 1.21952 0.97201 0.97615 0.97454 1.21126 0.98131 0.98780 0.95937 1.21278 0.99617 0.98298 0.94859 1.20051 1.00428 0.94427 0.94484 0.89969 1.22094 0.90995 0.89853 0.96524 1.86397 1.50845 1.50125 1.51633 1.20881 0.97409 0.95369 0.93134 0.91155 0.77494 0.86020 0.86169 0.93744 0.95564 0.92167 0.91024 0.91606 0.91599 0.94111 0.91022 0.94246 0.92874 0.75478 0.95045 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.22 13.96 21.66 0.30 -55.92 16 2 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 3 Si 0.96 38.52 27.74 68.60 1.90 40.42 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.23 -7.75 6.52 99.48 0.65 -7.11 16 7 C -0.33 -19.04 10.16 84.04 0.85 -18.18 16 8 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 9 N -0.59 -27.30 5.09 -306.99 -1.56 -28.87 16 10 C 0.42 18.22 6.99 87.65 0.61 18.83 16 11 O -0.61 -32.31 11.98 -3.05 -0.04 -32.35 16 12 C 0.05 1.39 5.55 85.56 0.47 1.86 16 13 N -0.49 -14.87 4.45 -916.42 -4.08 -18.95 16 14 C 0.06 1.94 3.88 87.16 0.34 2.28 16 15 C -0.10 -2.62 6.14 31.39 0.19 -2.43 16 16 C -0.10 -2.36 5.42 30.21 0.16 -2.20 16 17 C -0.10 -2.63 4.93 30.29 0.15 -2.48 16 18 C -0.08 -1.94 2.17 -12.46 -0.03 -1.97 16 19 H 0.08 2.09 7.59 -2.39 -0.02 2.07 16 20 C 0.08 1.92 6.36 71.98 0.46 2.38 16 21 O -0.58 -11.93 12.87 -148.98 -1.92 -13.85 16 22 C 0.06 1.86 3.34 83.94 0.28 2.14 16 23 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 24 H 0.39 14.98 5.76 -92.71 -0.53 14.45 16 25 H 0.12 3.04 7.92 -2.39 -0.02 3.03 16 26 H 0.12 3.04 8.11 -2.38 -0.02 3.03 16 27 H 0.04 1.54 7.32 -2.39 -0.02 1.52 16 28 H 0.03 1.04 5.57 -2.39 -0.01 1.03 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.53 7.38 -2.39 -0.02 1.51 16 33 H 0.04 1.18 7.15 -2.39 -0.02 1.17 16 34 H 0.07 1.75 7.37 -2.38 -0.02 1.73 16 35 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 1.12 8.09 -2.39 -0.02 1.10 16 37 H 0.40 4.38 9.12 -74.06 -0.68 3.71 16 38 H 0.03 1.23 5.71 -2.38 -0.01 1.21 16 39 H 0.06 1.86 7.60 -2.39 -0.02 1.84 16 Total: -1.00 -73.45 300.21 -1.63 -75.09 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -0.21 Total: 34.50 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 3.96 Total: -0.08 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -5.34 Total: -103.73 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -1.95 Total: -46.19 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -73.45 -1.63 -75.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696755759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.696 kcal (2) G-P(sol) polarization free energy of solvation -73.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds