Wall clock time and date at job start Mon Mar 30 2020 04:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99850 * 2 1 4 4 C 1.53007 * 109.46933 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46759 * 60.46845 * 4 3 2 6 6 C 1.36935 * 120.00241 * 273.62299 * 5 4 3 7 7 H 1.07999 * 120.00143 * 336.61335 * 6 5 4 8 8 C 1.38817 * 120.00359 * 156.61383 * 6 5 4 9 9 N 1.31613 * 119.99784 * 37.25630 * 8 6 5 10 10 Si 1.86797 * 119.99912 * 217.26510 * 8 6 5 11 11 H 1.48498 * 109.47636 * 59.99472 * 10 8 6 12 12 H 1.48504 * 109.46830 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46954 * 299.99244 * 10 8 6 14 14 C 1.46501 * 119.99935 * 93.62271 * 5 4 3 15 15 C 1.53008 * 109.46892 * 96.63045 * 14 5 4 16 16 C 1.52998 * 110.43341 * 294.88604 * 15 14 5 17 17 C 1.54632 * 110.48299 * 172.34978 * 15 14 5 18 18 C 1.54478 * 101.76550 * 265.98429 * 17 15 14 19 19 N 1.46770 * 105.54604 * 334.54193 * 18 17 15 20 20 C 1.34614 * 111.18273 * 17.05895 * 19 18 17 21 21 O 1.21280 * 124.90765 * 179.57853 * 20 19 18 22 22 H 1.09000 * 109.46660 * 299.99908 * 1 2 3 23 23 H 1.08999 * 109.47263 * 59.99235 * 1 2 3 24 24 H 1.08999 * 109.47083 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47263 * 60.00537 * 3 2 1 26 26 H 1.09003 * 109.47378 * 300.00033 * 3 2 1 27 27 H 1.08999 * 109.47321 * 300.47448 * 4 3 2 28 28 H 1.08998 * 109.47060 * 180.46221 * 4 3 2 29 29 H 0.96999 * 119.99956 * 180.02562 * 9 8 6 30 30 H 1.09000 * 109.47330 * 336.62914 * 14 5 4 31 31 H 1.09000 * 109.47522 * 216.62461 * 14 5 4 32 32 H 1.08998 * 109.47727 * 298.38089 * 16 15 14 33 33 H 1.09009 * 109.46882 * 58.37833 * 16 15 14 34 34 H 1.09005 * 109.47078 * 178.37474 * 16 15 14 35 35 H 1.09003 * 110.96753 * 147.86744 * 17 15 14 36 36 H 1.08996 * 110.97217 * 24.10788 * 17 15 14 37 37 H 1.09000 * 110.24713 * 93.58611 * 18 17 15 38 38 H 1.08997 * 110.24740 * 215.49977 * 18 17 15 39 39 H 0.96999 * 124.34700 * 197.07562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9690 0.4672 -1.2008 6 6 4.0186 -0.9013 -1.2007 7 1 4.1142 -1.4381 -0.2684 8 6 3.9460 -1.5987 -2.3987 9 7 4.5335 -1.1206 -3.4751 10 14 3.0143 -3.2155 -2.4833 11 1 1.5941 -2.9884 -2.1137 12 1 3.0856 -3.7562 -3.8646 13 1 3.6223 -4.1871 -1.5390 14 6 4.3493 1.2138 -2.4026 15 6 5.8699 1.3797 -2.4399 16 6 6.3410 2.2505 -1.2734 17 6 6.3143 1.9939 -3.7876 18 6 6.6424 0.7319 -4.6160 19 7 6.9820 -0.3053 -3.6347 20 6 6.5536 0.0308 -2.4036 21 8 6.6958 -0.6494 -1.4096 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.6887 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8562 0.6366 0.8866 28 1 3.9788 2.1804 0.0089 29 1 4.4825 -1.6077 -4.3123 30 1 3.8769 2.1959 -2.3849 31 1 4.0216 0.6688 -3.2879 32 1 5.8977 3.2426 -1.3584 33 1 6.0334 1.7945 -0.3323 34 1 7.4275 2.3346 -1.2984 35 1 7.1992 2.6173 -3.6593 36 1 5.5029 2.5604 -4.2446 37 1 5.7741 0.4283 -5.2007 38 1 7.4912 0.9221 -5.2729 39 1 7.4539 -1.1258 -3.8468 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698289927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:46 Heat of formation + Delta-G solvation = -56.760538 kcal Electronic energy + Delta-G solvation = -21398.123192 eV Core-core repulsion = 18341.758420 eV Total energy + Delta-G solvation = -3056.364772 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95891 -38.72415 -37.01688 -36.48121 -33.87869 -33.04098 -29.99210 -29.06958 -27.47322 -27.12240 -25.50936 -24.24421 -22.19918 -21.94231 -19.62219 -18.51583 -17.51148 -17.22236 -16.87684 -16.34960 -16.10767 -15.70296 -15.44129 -15.14366 -14.85542 -14.40426 -14.18515 -13.86131 -13.53775 -13.20681 -13.06490 -12.74117 -12.71611 -12.59072 -12.55587 -12.36670 -12.15352 -12.04879 -11.90638 -11.52371 -11.28906 -11.20455 -10.33330 -9.90522 -9.80923 -9.26453 -8.55813 -7.76779 -4.78207 1.45524 1.48449 1.59211 2.67628 2.68693 3.15952 3.25560 3.44190 3.73709 4.09557 4.20387 4.31898 4.41718 4.50468 4.61245 4.63668 4.69531 4.76739 4.81899 4.83506 4.90317 4.95041 4.97967 5.08138 5.13142 5.25349 5.37999 5.47999 5.52149 5.62980 5.98529 6.05301 6.52578 6.64862 6.72995 6.95413 7.42663 8.09052 8.28831 8.51797 9.24806 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.010945 C = 0.008165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.718056 B = 2557.564503 C = 3428.482667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.400 6.400 3 C 0.050 3.950 4 C 0.150 3.850 5 N -0.597 5.597 6 C -0.184 4.184 7 H 0.030 0.970 8 C -0.019 4.019 9 N -0.867 5.867 10 Si 0.889 3.111 11 H -0.298 1.298 12 H -0.297 1.297 13 H -0.310 1.310 14 C 0.160 3.840 15 C -0.104 4.104 16 C -0.117 4.117 17 C -0.112 4.112 18 C 0.124 3.876 19 N -0.721 5.721 20 C 0.571 3.429 21 O -0.592 6.592 22 H 0.055 0.945 23 H 0.038 0.962 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.026 0.974 28 H 0.084 0.916 29 H 0.245 0.755 30 H 0.042 0.958 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.402 11.566 -2.175 11.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C -0.029 4.029 4 C 0.024 3.976 5 N -0.317 5.317 6 C -0.314 4.314 7 H 0.048 0.952 8 C -0.213 4.213 9 N -0.514 5.514 10 Si 0.722 3.278 11 H -0.226 1.226 12 H -0.224 1.224 13 H -0.238 1.238 14 C 0.034 3.966 15 C -0.110 4.110 16 C -0.175 4.175 17 C -0.151 4.151 18 C 0.000 4.000 19 N -0.373 5.373 20 C 0.359 3.641 21 O -0.472 6.472 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.265 11.113 -1.792 11.260 hybrid contribution -0.675 -1.891 -0.009 2.008 sum -0.940 9.222 -1.801 9.443 Atomic orbital electron populations 1.22764 0.81704 1.02164 1.00132 1.88131 1.19528 1.29050 1.95220 1.23326 0.96517 0.84023 0.99068 1.21011 0.91153 0.96268 0.89198 1.44043 1.75056 1.02001 1.10601 1.18412 1.39072 0.82633 0.91285 0.95192 1.25015 1.02045 0.98093 0.96168 1.69997 1.40780 1.39576 1.01057 0.86438 0.82238 0.84186 0.74984 1.22647 1.22380 1.23813 1.21681 0.88991 0.93829 0.92087 1.21877 0.99946 0.92931 0.96215 1.21590 0.99653 0.98900 0.97351 1.22599 1.02128 0.96499 0.93840 1.21755 0.99911 0.87156 0.91184 1.45750 1.59796 1.22478 1.09242 1.20242 0.74255 0.87599 0.81955 1.90524 1.59452 1.59325 1.37849 0.92663 0.94354 0.90902 0.92277 0.94231 0.95530 0.89838 0.94449 0.93929 0.88722 0.90422 0.94497 0.93782 0.89536 0.88859 0.92827 0.90002 0.77624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.01 113.37 1.25 2.18 16 2 O -0.40 -17.02 9.82 -148.98 -1.46 -18.48 16 3 C 0.05 1.77 6.31 71.98 0.45 2.23 16 4 C 0.15 6.05 5.18 86.38 0.45 6.49 16 5 N -0.60 -28.58 2.14 -701.98 -1.50 -30.08 16 6 C -0.18 -10.50 6.15 84.04 0.52 -9.98 16 7 H 0.03 1.92 8.04 -2.91 -0.02 1.90 16 8 C -0.02 -1.06 4.91 84.86 0.42 -0.64 16 9 N -0.87 -45.38 6.04 21.65 0.13 -45.25 16 10 Si 0.89 47.50 29.68 68.60 2.04 49.53 16 11 H -0.30 -16.14 7.11 99.48 0.71 -15.43 16 12 H -0.30 -15.53 7.11 99.48 0.71 -14.82 16 13 H -0.31 -17.37 7.11 99.48 0.71 -16.66 16 14 C 0.16 6.78 4.34 86.38 0.37 7.15 16 15 C -0.10 -3.97 0.69 -52.19 -0.04 -4.01 16 16 C -0.12 -4.01 7.70 71.98 0.55 -3.46 16 17 C -0.11 -3.21 6.23 31.65 0.20 -3.01 16 18 C 0.12 3.84 7.29 86.83 0.63 4.47 16 19 N -0.72 -28.76 5.04 -459.54 -2.31 -31.07 16 20 C 0.57 26.81 4.30 87.87 0.38 27.19 16 21 O -0.59 -34.12 15.76 -3.03 -0.05 -34.17 16 22 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.03 1.17 8.07 -2.39 -0.02 1.15 16 28 H 0.08 2.81 6.95 -2.39 -0.02 2.80 16 29 H 0.24 12.79 8.31 -92.71 -0.77 12.02 16 30 H 0.04 1.56 8.02 -2.39 -0.02 1.54 16 31 H 0.10 4.57 5.19 -2.39 -0.01 4.56 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.04 1.46 6.47 -2.38 -0.02 1.44 16 34 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.09 2.05 7.91 -2.39 -0.02 2.03 16 36 H 0.09 2.31 7.90 -2.39 -0.02 2.30 16 37 H 0.05 1.80 7.80 -2.39 -0.02 1.79 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.39 15.26 8.96 -92.71 -0.83 14.42 16 Total: -1.00 -70.84 302.68 2.22 -68.62 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.20 Total: 12.29 kcal Atomic # 6 Polarization: 23.42 SS G_CDS: 5.18 Total: 28.60 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -3.69 Total: -106.40 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -1.51 Total: -52.65 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.04 Total: 49.53 kcal Total: -70.84 2.22 -68.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698289927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.861 kcal (2) G-P(sol) polarization free energy of solvation -70.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds