Wall clock time and date at job start Mon Mar 30 2020 04:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47337 * 2 1 4 4 C 1.53008 * 109.46917 * 120.00280 * 2 1 3 5 5 H 1.08998 * 110.82429 * 303.64184 * 4 2 1 6 6 C 1.55223 * 111.02406 * 67.35504 * 4 2 1 7 7 O 1.44374 * 103.56485 * 155.07116 * 6 4 2 8 8 C 1.43746 * 106.97981 * 320.01125 * 7 6 4 9 9 C 1.54101 * 107.28840 * 26.51148 * 8 7 6 10 10 H 1.08999 * 110.48782 * 239.16161 * 9 8 7 11 11 N 1.46902 * 110.48616 * 116.64999 * 9 8 7 12 12 C 1.46902 * 111.00192 * 88.24287 * 11 9 8 13 13 C 1.50703 * 109.46924 * 180.02562 * 12 11 9 14 14 O 1.21290 * 120.00285 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99541 * 180.02562 * 13 12 11 16 16 C 1.37101 * 119.99649 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00266 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00025 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00069 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99709 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 269.99702 * 20 18 16 22 22 H 1.48503 * 109.47261 * 149.99882 * 20 18 16 23 23 H 1.48500 * 109.47454 * 29.99875 * 20 18 16 24 24 H 1.09000 * 109.47263 * 300.00045 * 1 2 3 25 25 H 1.08999 * 109.47153 * 60.00125 * 1 2 3 26 26 H 1.09001 * 109.47440 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47263 * 239.99954 * 2 1 3 28 28 H 1.08999 * 109.47304 * 299.99680 * 3 2 1 29 29 H 1.09000 * 109.46982 * 59.99782 * 3 2 1 30 30 H 1.09000 * 109.47152 * 179.97438 * 3 2 1 31 31 H 1.08997 * 110.52127 * 36.57503 * 6 4 2 32 32 H 1.08996 * 110.64242 * 273.63211 * 6 4 2 33 33 H 1.08993 * 109.87856 * 267.08827 * 8 7 6 34 34 H 1.08998 * 109.87711 * 145.93497 * 8 7 6 35 35 H 1.00897 * 111.00119 * 212.19843 * 11 9 8 36 36 H 1.08996 * 109.46937 * 60.00369 * 12 11 9 37 37 H 1.08999 * 109.46810 * 300.00207 * 12 11 9 38 38 H 0.96993 * 120.00289 * 359.97438 * 15 13 12 39 39 H 0.97008 * 120.00016 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2493 5 1 1.6369 -0.2636 2.1527 6 6 1.6996 -2.2349 1.1963 7 8 2.7018 -2.8372 2.0433 8 6 3.9400 -2.1571 1.7773 9 6 3.5875 -0.7408 1.2828 10 1 3.9929 -0.5732 0.2850 11 7 4.0943 0.2715 2.2191 12 6 5.4723 0.6552 1.8845 13 6 5.9570 1.6922 2.8646 14 8 5.2263 2.0745 3.7541 15 7 7.2021 2.1957 2.7522 16 6 7.6429 3.1395 3.6436 17 1 6.9923 3.4799 4.4356 18 6 8.9268 3.6582 3.5280 19 7 9.3491 4.5632 4.3821 20 14 10.0519 3.0701 2.1578 21 1 10.8351 1.8994 2.6284 22 1 10.9795 4.1646 1.7748 23 1 9.2355 2.6785 0.9807 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.7833 -2.6099 0.1763 32 1 0.7011 -2.4183 1.5930 33 1 4.4977 -2.6904 1.0075 34 1 4.5319 -2.0944 2.6904 35 1 3.4894 1.0787 2.2410 36 1 5.4999 1.0672 0.8757 37 1 6.1165 -0.2225 1.9363 38 1 7.7863 1.8903 2.0407 39 1 10.2456 4.9251 4.3016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699900721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:15 Heat of formation + Delta-G solvation = -87.775340 kcal Electronic energy + Delta-G solvation = -19543.278490 eV Core-core repulsion = 16485.568815 eV Total energy + Delta-G solvation = -3057.709675 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.05816 -38.34719 -36.05150 -34.84248 -33.84371 -31.67576 -29.95747 -28.69909 -27.29334 -26.32735 -23.89520 -22.96295 -20.97666 -20.24687 -19.33547 -18.30980 -16.93657 -16.28059 -15.79512 -15.32357 -15.11461 -14.77332 -14.46870 -14.21940 -13.62871 -13.48660 -13.35520 -13.07859 -12.83356 -12.52410 -12.35629 -12.23438 -11.87030 -11.70979 -11.43153 -11.33655 -11.14688 -10.87061 -10.73586 -10.67337 -10.60602 -9.98344 -9.69541 -9.58277 -8.60223 -8.22522 -8.17306 -6.31856 -3.83364 3.01223 3.06168 3.14219 3.72225 3.86147 3.99094 4.09556 4.27658 4.55798 4.67825 4.79913 4.91233 5.01775 5.13403 5.15944 5.19938 5.31429 5.44486 5.45369 5.50390 5.58923 5.64540 5.66115 5.68458 5.76580 5.84492 5.87283 5.92406 5.98204 6.07785 6.16725 6.79743 7.09530 7.53006 7.57433 8.13550 8.58784 8.94110 9.41432 9.81458 10.81267 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.031357 B = 0.004450 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.727018 B = 6290.172598 C = 6569.704239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.153 4.153 4 C -0.121 4.121 5 H 0.098 0.902 6 C 0.055 3.945 7 O -0.375 6.375 8 C 0.053 3.947 9 C 0.057 3.943 10 H 0.058 0.942 11 N -0.656 5.656 12 C 0.045 3.955 13 C 0.450 3.550 14 O -0.563 6.563 15 N -0.590 5.590 16 C -0.305 4.305 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.354 0.646 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.370 0.630 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.698 -11.493 -13.235 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 C -0.211 4.211 4 C -0.140 4.140 5 H 0.116 0.884 6 C -0.022 4.022 7 O -0.294 6.294 8 C -0.024 4.024 9 C -0.053 4.053 10 H 0.076 0.924 11 N -0.291 5.291 12 C -0.088 4.088 13 C 0.236 3.764 14 O -0.445 6.445 15 N -0.230 5.230 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.521 5.521 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.176 0.824 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.203 0.797 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.856 -11.698 -11.920 21.076 hybrid contribution 1.104 0.422 -2.027 2.346 sum -11.752 -11.277 -13.946 21.442 Atomic orbital electron populations 1.21854 0.94774 1.01770 1.02108 1.21096 0.96065 0.96419 0.96920 1.21921 1.01155 0.95634 1.02348 1.23058 0.94485 0.96698 0.99733 0.88403 1.23553 0.93139 0.90810 0.94733 1.88884 1.18749 1.58768 1.62989 1.23300 0.87042 0.90344 1.01724 1.22971 0.94138 0.93711 0.94499 0.92422 1.60197 1.02458 1.16270 1.50130 1.21796 0.91442 0.98782 0.96748 1.19672 0.83104 0.85620 0.88051 1.90571 1.55417 1.62477 1.36049 1.42204 1.12963 1.38745 1.29068 1.19436 0.99238 1.15349 1.09380 0.86270 1.25034 0.96935 0.96553 0.97597 1.69622 1.18795 1.27853 1.35825 0.86673 0.81427 0.79405 0.81870 1.19560 1.20178 1.19579 0.92296 0.92583 0.92614 0.91136 0.92408 0.92002 0.92730 0.92428 0.89091 0.92785 0.88425 0.82424 0.93737 0.89473 0.79707 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.05 37.16 0.34 -0.75 16 2 C -0.09 -0.74 2.34 -90.62 -0.21 -0.95 16 3 C -0.15 -1.47 8.22 37.15 0.31 -1.17 16 4 C -0.12 -1.25 2.15 -88.49 -0.19 -1.44 16 5 H 0.10 1.15 7.98 -51.93 -0.41 0.74 16 6 C 0.05 0.55 6.42 38.33 0.25 0.79 16 7 O -0.38 -5.03 11.52 -35.23 -0.41 -5.43 16 8 C 0.05 0.67 7.47 37.73 0.28 0.95 16 9 C 0.06 0.69 2.02 -66.18 -0.13 0.56 16 10 H 0.06 0.63 7.19 -51.93 -0.37 0.26 16 11 N -0.66 -10.12 5.71 -106.37 -0.61 -10.73 16 12 C 0.05 0.74 6.02 -4.97 -0.03 0.71 16 13 C 0.45 10.19 7.82 -10.98 -0.09 10.10 16 14 O -0.56 -15.16 15.78 5.55 0.09 -15.07 16 15 N -0.59 -14.05 5.09 -10.96 -0.06 -14.10 16 16 C -0.31 -8.65 10.16 -14.93 -0.15 -8.81 16 17 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 18 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 19 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 20 Si 0.88 19.32 27.74 -169.99 -4.71 14.61 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.36 7.51 -51.93 -0.39 -0.03 16 27 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.58 6.74 -51.93 -0.35 0.23 16 31 H 0.06 0.50 8.01 -51.93 -0.42 0.08 16 32 H 0.09 0.80 8.10 -51.93 -0.42 0.37 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 1.38 7.93 -51.93 -0.41 0.96 16 35 H 0.35 5.68 7.07 -39.29 -0.28 5.40 16 36 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -32.28 314.72 -6.13 -38.41 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.22 Total: 11.53 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 0.27 Total: 1.04 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.11 Total: -49.82 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.32 Total: -20.51 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.28 -6.13 -38.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699900721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.369 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds