Wall clock time and date at job start Mon Mar 30 2020 04:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99731 * 2 1 4 4 H 1.48500 * 109.46937 * 269.99847 * 3 2 1 5 5 H 1.48503 * 109.47243 * 29.99471 * 3 2 1 6 6 H 1.48493 * 109.47228 * 149.99806 * 3 2 1 7 7 C 1.37875 * 120.00784 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99176 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00324 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00040 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00003 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00352 * 180.02562 * 11 10 9 14 14 O 1.42899 * 109.47163 * 180.02562 * 13 11 10 15 15 C 1.42905 * 113.99778 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47079 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.46969 * 179.97438 * 16 15 14 18 18 H 1.08996 * 110.33266 * 54.30195 * 17 16 15 19 19 C 1.54911 * 110.37107 * 176.54920 * 17 16 15 20 20 C 1.55265 * 101.59780 * 155.81547 * 19 17 16 21 21 C 1.54323 * 103.08539 * 324.49242 * 20 19 17 22 22 N 1.47439 * 107.23303 * 22.20130 * 21 20 19 23 23 H 0.96994 * 120.00440 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47405 * 59.99992 * 9 7 2 25 25 H 1.08997 * 109.47147 * 299.99834 * 9 7 2 26 26 H 0.97005 * 120.00071 * 0.02562 * 10 9 7 27 27 H 1.08997 * 109.46854 * 59.99944 * 13 11 10 28 28 H 1.08997 * 109.47005 * 300.00211 * 13 11 10 29 29 H 1.09004 * 109.47054 * 299.99711 * 15 14 13 30 30 H 1.09000 * 109.47187 * 59.99767 * 15 14 13 31 31 H 1.09004 * 109.46930 * 299.99773 * 16 15 14 32 32 H 1.09004 * 109.47059 * 59.99375 * 16 15 14 33 33 H 1.08993 * 110.99059 * 273.99312 * 19 17 16 34 34 H 1.09000 * 110.99036 * 37.80985 * 19 17 16 35 35 H 1.08993 * 110.74159 * 206.05537 * 20 19 17 36 36 H 1.08999 * 110.75268 * 82.92932 * 20 19 17 37 37 H 1.08999 * 109.88627 * 262.79648 * 21 20 19 38 38 H 1.08999 * 109.88547 * 141.60987 * 21 20 19 39 39 H 1.00898 * 111.00723 * 238.72077 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5117 -1.1938 0.0011 10 7 4.0001 -2.5750 0.0022 11 6 5.3251 -2.8212 0.0024 12 8 6.1133 -1.8994 0.0011 13 6 5.8276 -4.2420 0.0030 14 8 7.2566 -4.2419 0.0036 15 6 7.8379 -5.5473 0.0036 16 6 9.3631 -5.4264 0.0050 17 6 9.9855 -6.8241 0.0056 18 1 9.5955 -7.4127 -0.8247 19 6 11.5292 -6.7271 -0.0804 20 6 11.9625 -8.0766 0.5535 21 6 10.9056 -8.3003 1.6555 22 7 9.7186 -7.5058 1.2901 23 1 -0.4850 0.8400 -0.0004 24 1 3.8747 -0.6798 0.8911 25 1 3.8753 -0.6802 -0.8888 26 1 3.3697 -3.3124 0.0021 27 1 5.4643 -4.7561 -0.8868 28 1 5.4642 -4.7555 0.8931 29 1 7.5159 -6.0885 0.8934 30 1 7.5167 -6.0881 -0.8866 31 1 9.6855 -4.8852 -0.8846 32 1 9.6840 -4.8857 0.8955 33 1 11.8588 -6.6568 -1.1169 34 1 11.9006 -5.8851 0.5038 35 1 12.9597 -7.9971 0.9863 36 1 11.9265 -8.8787 -0.1836 37 1 11.2952 -7.9644 2.6165 38 1 10.6429 -9.3569 1.7082 39 1 9.4929 -6.8393 2.0131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703030270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:40 Heat of formation + Delta-G solvation = -119.163024 kcal Electronic energy + Delta-G solvation = -18327.298664 eV Core-core repulsion = 15268.227917 eV Total energy + Delta-G solvation = -3059.070747 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.69301 -39.83510 -38.40669 -36.16131 -34.43451 -33.50206 -30.93813 -30.80021 -28.85821 -27.38266 -24.04683 -23.72886 -21.81049 -21.72477 -21.41601 -19.23220 -17.94723 -17.83211 -17.47788 -16.94543 -16.69540 -16.26933 -16.04486 -15.93655 -15.13378 -14.91028 -14.62666 -14.38883 -14.23611 -13.86709 -13.52934 -13.21523 -13.07405 -12.72352 -12.60596 -12.34834 -12.24098 -11.94120 -11.89781 -11.78412 -11.66327 -11.57360 -10.92495 -10.80104 -10.64296 -9.97652 -9.41470 -8.40373 -6.47428 1.32603 1.35010 1.47727 1.64941 1.98284 2.28031 2.94817 3.04774 3.26453 3.76011 3.85164 3.86263 4.01645 4.13195 4.22126 4.31511 4.33308 4.37843 4.51669 4.54319 4.66236 4.77164 4.81499 4.94530 5.00905 5.01836 5.05787 5.12888 5.19681 5.24569 5.37614 5.46925 5.94190 6.03551 6.18418 6.43072 6.53279 6.81256 7.14923 7.37267 8.74115 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.065423 B = 0.002782 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.881694 B =10063.665433 C =10307.011446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.232 3.768 10 N -0.701 5.701 11 C 0.497 3.503 12 O -0.589 6.589 13 C 0.057 3.943 14 O -0.399 6.399 15 C 0.061 3.939 16 C -0.117 4.117 17 C 0.086 3.914 18 H 0.089 0.911 19 C -0.149 4.149 20 C -0.138 4.138 21 C 0.043 3.957 22 N -0.693 5.693 23 H 0.273 0.727 24 H 0.012 0.988 25 H 0.011 0.989 26 H 0.412 0.588 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.653 -18.092 0.946 28.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.174 4.174 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.108 3.892 10 N -0.353 5.353 11 C 0.284 3.716 12 O -0.470 6.470 13 C -0.023 4.023 14 O -0.318 6.318 15 C -0.015 4.015 16 C -0.155 4.155 17 C -0.023 4.023 18 H 0.107 0.893 19 C -0.188 4.188 20 C -0.177 4.177 21 C -0.087 4.087 22 N -0.323 5.323 23 H 0.082 0.918 24 H 0.030 0.970 25 H 0.029 0.971 26 H 0.249 0.751 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 21.767 -17.713 0.683 28.072 hybrid contribution 0.045 1.174 0.273 1.206 sum 21.812 -16.539 0.956 27.390 Atomic orbital electron populations 1.69971 1.07605 1.28634 1.50624 1.25584 0.95550 1.02624 0.93614 0.85875 0.79214 0.79455 0.79458 1.18990 1.19721 1.18658 1.21274 0.89743 0.94729 1.52652 0.91904 1.19114 0.93490 0.80878 0.95715 1.45905 1.06264 1.09970 1.73139 1.21154 0.82283 0.92230 0.75945 1.90646 1.56508 1.48204 1.51651 1.22207 0.82809 0.92029 1.05223 1.87951 1.18084 1.29996 1.95797 1.22696 0.93901 0.83052 1.01847 1.21726 0.93346 0.97004 1.03410 1.22430 0.94161 0.92241 0.93508 0.89273 1.23201 0.95370 0.97934 1.02325 1.22788 0.99314 0.97227 0.98350 1.22685 0.88999 0.99079 0.97890 1.61901 1.37118 1.28114 1.05142 0.91806 0.96988 0.97071 0.75147 0.87389 0.87416 0.91555 0.91851 0.90677 0.91662 0.89867 0.91402 0.90113 0.90683 0.92350 0.90719 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.43 13.96 21.45 0.30 -55.13 16 2 C 0.03 1.52 5.47 84.65 0.46 1.98 16 3 Si 0.94 44.37 27.47 68.60 1.88 46.26 16 4 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.26 -12.42 6.54 99.48 0.65 -11.77 16 7 C -0.55 -30.13 9.83 25.60 0.25 -29.87 16 8 H 0.06 3.60 7.84 -2.91 -0.02 3.58 16 9 C 0.23 11.50 4.50 85.63 0.38 11.89 16 10 N -0.70 -28.04 5.55 -466.80 -2.59 -30.63 16 11 C 0.50 19.22 7.91 87.66 0.69 19.91 16 12 O -0.59 -28.76 16.50 15.99 0.26 -28.49 16 13 C 0.06 1.49 6.42 71.24 0.46 1.94 16 14 O -0.40 -11.62 9.88 -129.94 -1.28 -12.91 16 15 C 0.06 1.20 5.86 71.98 0.42 1.62 16 16 C -0.12 -2.04 4.96 30.59 0.15 -1.89 16 17 C 0.09 1.21 3.36 45.39 0.15 1.36 16 18 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 19 C -0.15 -1.78 6.51 32.02 0.21 -1.57 16 20 C -0.14 -1.42 6.94 31.82 0.22 -1.20 16 21 C 0.04 0.50 7.59 86.65 0.66 1.16 16 22 N -0.69 -10.01 6.95 -482.47 -3.35 -13.36 16 23 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 24 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 25 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 26 H 0.41 13.85 8.32 -92.70 -0.77 13.08 16 27 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.07 1.17 7.86 -2.38 -0.02 1.15 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.06 1.23 8.02 -2.39 -0.02 1.21 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.86 8.06 -2.39 -0.02 0.84 16 35 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 37 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.34 4.84 8.27 -89.70 -0.74 4.09 16 Total: -1.00 -71.35 323.25 -1.24 -72.59 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.53 Total: 16.34 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 4.06 Total: 5.33 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -5.64 Total: -99.12 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -1.02 Total: -41.40 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal Total: -71.35 -1.24 -72.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703030270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.572 kcal (2) G-P(sol) polarization free energy of solvation -71.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds