Wall clock time and date at job start Mon Mar 30 2020 04:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99794 * 2 1 4 4 H 1.48499 * 109.46978 * 239.99743 * 3 2 1 5 5 H 1.48495 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46830 * 119.99971 * 3 2 1 7 7 C 1.37873 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00110 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00112 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47412 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47123 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46948 * 55.00372 * 11 10 9 13 13 N 1.46893 * 109.47387 * 294.99987 * 11 10 9 14 14 C 1.50703 * 109.46955 * 174.99639 * 11 10 9 15 15 O 1.21283 * 119.99488 * 100.00018 * 14 11 10 16 16 N 1.34777 * 120.00290 * 280.00458 * 14 11 10 17 17 C 1.46498 * 119.99828 * 180.27728 * 16 14 11 18 18 H 1.09002 * 112.85022 * 335.91707 * 17 16 14 19 19 C 1.53782 * 113.61718 * 107.22525 * 17 16 14 20 20 C 1.53783 * 87.08212 * 139.98032 * 19 17 16 21 21 H 1.08997 * 113.69029 * 89.12922 * 20 19 17 22 22 C 1.53003 * 113.61122 * 220.02111 * 20 19 17 23 23 O 1.42902 * 109.46793 * 272.49642 * 22 20 19 24 24 C 1.53781 * 113.61158 * 204.72374 * 17 16 14 25 25 H 0.97004 * 119.99921 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46796 * 59.99843 * 9 7 2 27 27 H 1.08998 * 109.47322 * 300.00229 * 9 7 2 28 28 H 1.08996 * 109.46721 * 59.99958 * 10 9 7 29 29 H 1.08998 * 109.46958 * 300.00322 * 10 9 7 30 30 H 1.00901 * 111.00090 * 300.00043 * 13 11 10 31 31 H 1.00901 * 111.00357 * 63.95153 * 13 11 10 32 32 H 0.97001 * 119.99727 * 359.97438 * 16 14 11 33 33 H 1.09002 * 113.61513 * 254.52730 * 19 17 16 34 34 H 1.08999 * 113.61337 * 25.42719 * 19 17 16 35 35 H 1.09002 * 109.47288 * 32.49672 * 22 20 19 36 36 H 1.08999 * 109.46924 * 152.49697 * 22 20 19 37 37 H 0.96705 * 113.99687 * 180.02562 * 23 22 20 38 38 H 1.09001 * 113.61403 * 334.56380 * 24 17 16 39 39 H 1.08994 * 113.61554 * 105.38809 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 1 0.7885 -5.0067 -0.8433 13 7 0.7282 -5.1189 1.2537 14 6 2.4550 -6.1297 -0.1251 15 8 2.7865 -6.7535 0.8608 16 7 2.9584 -6.4584 -1.3314 17 6 3.9012 -7.5731 -1.4526 18 1 4.4316 -7.7818 -0.5235 19 6 3.2956 -8.8232 -2.1126 20 6 4.6346 -8.9854 -2.8514 21 1 5.3662 -9.5816 -2.3061 22 6 4.4809 -9.4216 -4.3099 23 8 4.4281 -10.8481 -4.3773 24 6 4.8237 -7.4690 -2.6786 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5566 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 2.8719 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 1.3477 -5.1034 2.0499 31 1 0.0234 -4.4009 1.3300 32 1 2.6930 -5.9596 -2.1199 33 1 3.0843 -9.6291 -1.4098 34 1 2.4562 -8.6051 -2.7728 35 1 3.5607 -9.0042 -4.7189 36 1 5.3317 -9.0617 -4.8883 37 1 4.3314 -11.1961 -5.2744 38 1 4.4020 -6.8807 -3.4936 39 1 5.8456 -7.1804 -2.4328 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707507974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:41 Heat of formation + Delta-G solvation = -88.540283 kcal Electronic energy + Delta-G solvation = -18822.325041 eV Core-core repulsion = 15764.582196 eV Total energy + Delta-G solvation = -3057.742845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.21121 -38.71644 -36.59070 -35.39953 -33.31623 -32.83987 -29.88644 -28.27624 -26.41397 -25.91699 -24.12795 -22.15206 -20.63451 -20.21377 -19.46107 -17.63137 -17.26849 -16.50286 -16.17384 -15.66564 -15.02786 -14.67085 -14.48110 -14.34744 -14.16725 -13.70102 -13.11549 -13.00423 -12.70720 -12.45817 -12.14299 -11.91191 -11.68283 -11.43776 -11.09306 -10.93106 -10.87628 -10.72980 -10.71039 -10.17850 -9.99103 -9.89046 -9.29366 -9.19438 -8.90546 -8.44715 -8.17112 -6.09389 -4.12696 2.93617 3.27563 3.29029 3.32548 3.35025 3.85192 4.28512 4.38458 4.39052 4.67370 4.73958 5.02766 5.08024 5.15849 5.20904 5.25603 5.26812 5.46858 5.53805 5.59207 5.64467 5.77384 5.84916 5.87345 6.16975 6.28622 6.51599 6.62312 6.87173 7.29169 7.45077 7.51374 7.61105 7.73656 7.87579 7.92044 8.30274 8.49969 8.93143 9.52204 11.01473 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.029584 B = 0.003593 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.219814 B = 7789.988036 C = 8339.852939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.074 3.926 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.539 6.539 16 N -0.725 5.725 17 C 0.125 3.875 18 H 0.114 0.886 19 C -0.144 4.144 20 C -0.109 4.109 21 H 0.100 0.900 22 C 0.087 3.913 23 O -0.574 6.574 24 C -0.139 4.139 25 H 0.262 0.738 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.345 0.655 31 H 0.354 0.646 32 H 0.401 0.599 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.378 0.622 38 H 0.088 0.912 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.277 -16.042 -9.376 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.041 4.041 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.415 6.415 16 N -0.376 5.376 17 C 0.020 3.980 18 H 0.132 0.868 19 C -0.182 4.182 20 C -0.128 4.128 21 H 0.118 0.882 22 C 0.009 3.991 23 O -0.379 6.379 24 C -0.177 4.177 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.159 0.841 31 H 0.169 0.831 32 H 0.236 0.764 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.224 0.776 38 H 0.107 0.893 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.179 -17.006 -8.260 20.223 hybrid contribution 0.664 2.182 -0.901 2.452 sum 7.843 -14.825 -9.161 19.110 Atomic orbital electron populations 1.69941 1.06022 1.26905 1.50355 1.25013 0.94873 0.99299 0.95115 0.86638 0.79590 0.83012 0.78664 1.20222 1.21210 1.20215 1.21150 0.92992 0.90932 1.51244 0.92770 1.19098 0.93719 0.91098 0.97349 1.22374 0.99854 0.93978 1.01467 1.21484 0.94697 0.92358 0.95592 0.88634 1.58741 1.18465 1.55861 1.03222 1.20938 0.80941 0.84202 0.82592 1.90626 1.60107 1.53538 1.37194 1.45978 1.46871 1.34715 1.10074 1.22371 0.90672 0.86422 0.98549 0.86833 1.23524 0.96724 0.98429 0.99561 1.22346 0.99234 0.96067 0.95191 0.88210 1.22180 0.99613 0.80921 0.96359 1.86504 1.96991 1.21006 1.33408 1.23365 1.00803 0.95283 0.98270 0.92810 0.96346 0.96402 0.92699 0.92563 0.84148 0.83092 0.76409 0.90892 0.89707 0.93403 0.93542 0.77566 0.89303 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.37 9.11 -34.44 -0.31 -14.69 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 10 C -0.14 -2.68 4.78 -26.73 -0.13 -2.80 16 11 C 0.07 1.26 3.21 -68.87 -0.22 1.04 16 12 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 13 N -0.83 -14.53 8.94 -5.66 -0.05 -14.59 16 14 C 0.53 8.75 7.08 -10.98 -0.08 8.68 16 15 O -0.54 -10.67 15.85 5.55 0.09 -10.58 16 16 N -0.72 -9.25 5.35 -53.02 -0.28 -9.54 16 17 C 0.13 1.42 4.24 -67.12 -0.28 1.14 16 18 H 0.11 1.49 7.47 -51.93 -0.39 1.10 16 19 C -0.14 -1.47 7.43 -25.92 -0.19 -1.67 16 20 C -0.11 -0.95 4.01 -89.80 -0.36 -1.31 16 21 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 22 C 0.09 0.65 6.88 37.16 0.26 0.91 16 23 O -0.57 -4.84 13.66 -35.23 -0.48 -5.32 16 24 C -0.14 -1.17 7.39 -25.92 -0.19 -1.37 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.35 6.13 8.58 -39.29 -0.34 5.80 16 31 H 0.35 6.18 7.55 -39.29 -0.30 5.88 16 32 H 0.40 4.26 8.73 -40.82 -0.36 3.90 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.83 7.90 -51.93 -0.41 0.42 16 35 H 0.05 0.32 7.84 -51.93 -0.41 -0.08 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.38 1.44 9.12 45.56 0.42 1.86 16 38 H 0.09 0.65 8.08 -51.93 -0.42 0.24 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 325.59 15.07 4.91 4.91 Total: -1.00 -32.81 325.59 -7.33 -40.14 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -5.48 Total: 12.13 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.74 Total: -8.08 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.40 Total: -49.38 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.39 Total: -15.90 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.81 -7.33 -40.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707507974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.401 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds