Wall clock time and date at job start Mon Mar 30 2020 04:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99794 * 2 1 4 4 H 1.48499 * 109.46978 * 239.99743 * 3 2 1 5 5 H 1.48495 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46830 * 119.99971 * 3 2 1 7 7 C 1.37873 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00110 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00112 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47412 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47123 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46948 * 55.00372 * 11 10 9 13 13 N 1.46893 * 109.47387 * 294.99987 * 11 10 9 14 14 C 1.50703 * 109.46955 * 174.99639 * 11 10 9 15 15 O 1.21283 * 119.99488 * 100.00018 * 14 11 10 16 16 N 1.34777 * 120.00290 * 280.00458 * 14 11 10 17 17 C 1.46498 * 119.99828 * 180.27728 * 16 14 11 18 18 H 1.09002 * 112.85022 * 335.91707 * 17 16 14 19 19 C 1.53782 * 113.61718 * 107.22525 * 17 16 14 20 20 C 1.53783 * 87.08212 * 139.98032 * 19 17 16 21 21 H 1.08997 * 113.69029 * 89.12922 * 20 19 17 22 22 C 1.53003 * 113.61122 * 220.02111 * 20 19 17 23 23 O 1.42902 * 109.46793 * 272.49642 * 22 20 19 24 24 C 1.53781 * 113.61158 * 204.72374 * 17 16 14 25 25 H 0.97004 * 119.99921 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46796 * 59.99843 * 9 7 2 27 27 H 1.08998 * 109.47322 * 300.00229 * 9 7 2 28 28 H 1.08996 * 109.46721 * 59.99958 * 10 9 7 29 29 H 1.08998 * 109.46958 * 300.00322 * 10 9 7 30 30 H 1.00901 * 111.00090 * 300.00043 * 13 11 10 31 31 H 1.00901 * 111.00357 * 63.95153 * 13 11 10 32 32 H 0.97001 * 119.99727 * 359.97438 * 16 14 11 33 33 H 1.09002 * 113.61513 * 254.52730 * 19 17 16 34 34 H 1.08999 * 113.61337 * 25.42719 * 19 17 16 35 35 H 1.09002 * 109.47288 * 32.49672 * 22 20 19 36 36 H 1.08999 * 109.46924 * 152.49697 * 22 20 19 37 37 H 0.96705 * 113.99687 * 180.02562 * 23 22 20 38 38 H 1.09001 * 113.61403 * 334.56380 * 24 17 16 39 39 H 1.08994 * 113.61554 * 105.38809 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 1 0.7885 -5.0067 -0.8433 13 7 0.7282 -5.1189 1.2537 14 6 2.4550 -6.1297 -0.1251 15 8 2.7865 -6.7535 0.8608 16 7 2.9584 -6.4584 -1.3314 17 6 3.9012 -7.5731 -1.4526 18 1 4.4316 -7.7818 -0.5235 19 6 3.2956 -8.8232 -2.1126 20 6 4.6346 -8.9854 -2.8514 21 1 5.3662 -9.5816 -2.3061 22 6 4.4809 -9.4216 -4.3099 23 8 4.4281 -10.8481 -4.3773 24 6 4.8237 -7.4690 -2.6786 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5566 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 2.8719 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 1.3477 -5.1034 2.0499 31 1 0.0234 -4.4009 1.3300 32 1 2.6930 -5.9596 -2.1199 33 1 3.0843 -9.6291 -1.4098 34 1 2.4562 -8.6051 -2.7728 35 1 3.5607 -9.0042 -4.7189 36 1 5.3317 -9.0617 -4.8883 37 1 4.3314 -11.1961 -5.2744 38 1 4.4020 -6.8807 -3.4936 39 1 5.8456 -7.1804 -2.4328 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707507974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:41 Heat of formation + Delta-G solvation = -115.502483 kcal Electronic energy + Delta-G solvation = -18823.494210 eV Core-core repulsion = 15764.582196 eV Total energy + Delta-G solvation = -3058.912014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.28182 -39.76341 -37.30887 -36.93064 -34.83569 -34.40896 -31.68064 -29.17163 -27.90934 -26.67589 -25.77861 -23.27647 -22.13502 -21.36404 -20.44965 -18.85415 -18.19751 -18.06183 -17.45483 -16.56403 -16.44797 -16.05383 -15.83512 -15.65360 -15.28832 -14.83171 -14.61903 -14.37516 -13.97400 -13.50768 -13.41993 -13.28282 -12.91550 -12.68154 -12.63737 -12.53530 -12.24471 -11.79555 -11.69517 -11.66631 -11.42832 -11.31341 -10.78755 -10.67232 -10.55323 -9.99618 -9.63403 -8.21088 -6.31650 1.40364 1.41927 1.49911 1.61246 2.17470 2.40484 3.12523 3.26901 3.50777 3.68642 3.76828 3.82515 3.89018 4.06585 4.14654 4.26162 4.47577 4.48880 4.67315 4.68264 4.75496 4.80614 4.84412 4.87553 5.05624 5.09216 5.11495 5.34427 5.46939 5.61997 5.66501 5.81094 6.08185 6.21614 6.47505 6.57761 6.83916 6.94901 7.26652 7.37541 8.89483 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.029584 B = 0.003593 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.219814 B = 7789.988036 C = 8339.852939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.120 4.120 11 C 0.080 3.920 12 H 0.110 0.890 13 N -0.832 5.832 14 C 0.526 3.474 15 O -0.575 6.575 16 N -0.707 5.707 17 C 0.111 3.889 18 H 0.092 0.908 19 C -0.142 4.142 20 C -0.105 4.105 21 H 0.092 0.908 22 C 0.087 3.913 23 O -0.597 6.597 24 C -0.122 4.122 25 H 0.264 0.736 26 H 0.003 0.997 27 H 0.001 0.999 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.343 0.657 31 H 0.352 0.648 32 H 0.415 0.585 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.396 0.604 38 H 0.108 0.892 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.398 -15.940 -11.086 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.160 4.160 11 C -0.035 4.035 12 H 0.128 0.872 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.454 6.454 16 N -0.359 5.359 17 C 0.006 3.994 18 H 0.110 0.890 19 C -0.181 4.181 20 C -0.124 4.124 21 H 0.110 0.890 22 C 0.010 3.990 23 O -0.406 6.406 24 C -0.160 4.160 25 H 0.073 0.927 26 H 0.021 0.979 27 H 0.019 0.981 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.156 0.844 31 H 0.167 0.833 32 H 0.252 0.748 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.246 0.754 38 H 0.126 0.874 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.315 -16.922 -10.028 21.356 hybrid contribution 0.297 2.090 -0.388 2.146 sum 8.612 -14.832 -10.416 20.066 Atomic orbital electron populations 1.70057 1.07514 1.27841 1.51293 1.25871 0.95729 1.02996 0.94732 0.85591 0.78366 0.78592 0.79053 1.19083 1.20871 1.19703 1.21608 0.93391 0.92479 1.50961 0.92644 1.18966 0.94038 0.91999 0.95709 1.22121 0.98754 0.93640 1.01442 1.21435 0.94802 0.91394 0.95899 0.87195 1.58759 1.18440 1.55645 1.03438 1.20786 0.80780 0.83882 0.83260 1.90615 1.61365 1.54811 1.38640 1.45879 1.46037 1.34673 1.09290 1.22548 0.91253 0.86489 0.99076 0.89003 1.23518 0.97993 0.97136 0.99450 1.22288 0.97734 0.96251 0.96094 0.88995 1.22201 1.00872 0.80676 0.95301 1.86450 1.97099 1.21604 1.35456 1.23304 1.00477 0.95328 0.96894 0.92723 0.97864 0.98078 0.93884 0.91318 0.84403 0.83276 0.74844 0.92594 0.88860 0.92376 0.91857 0.75380 0.87376 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.20 13.29 21.45 0.28 -53.91 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.96 43.04 29.54 68.60 2.03 45.06 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -29.82 9.11 25.60 0.23 -29.58 16 8 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.03 1.46 4.74 29.85 0.14 1.60 16 10 C -0.12 -4.61 4.78 30.59 0.15 -4.47 16 11 C 0.08 2.67 3.21 44.17 0.14 2.82 16 12 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 13 N -0.83 -29.16 8.94 -171.81 -1.54 -30.69 16 14 C 0.53 17.15 7.08 87.66 0.62 17.77 16 15 O -0.58 -22.88 15.85 -3.04 -0.05 -22.93 16 16 N -0.71 -17.00 5.35 -440.03 -2.36 -19.36 16 17 C 0.11 2.40 4.24 45.52 0.19 2.59 16 18 H 0.09 2.42 7.47 -2.39 -0.02 2.41 16 19 C -0.14 -2.75 7.43 31.12 0.23 -2.52 16 20 C -0.10 -1.63 4.01 -10.26 -0.04 -1.67 16 21 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 22 C 0.09 1.07 6.88 71.98 0.50 1.56 16 23 O -0.60 -8.88 13.66 -148.98 -2.04 -10.92 16 24 C -0.12 -1.75 7.39 31.12 0.23 -1.52 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.00 0.05 6.87 -2.39 -0.02 0.03 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.34 12.34 8.58 -89.69 -0.77 11.57 16 31 H 0.35 12.45 7.55 -89.69 -0.68 11.77 16 32 H 0.41 7.77 8.73 -92.71 -0.81 6.96 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.65 7.90 -2.39 -0.02 1.63 16 35 H 0.06 0.60 7.84 -2.39 -0.02 0.58 16 36 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.40 2.18 9.12 -74.05 -0.68 1.50 16 38 H 0.11 1.18 8.08 -2.39 -0.02 1.16 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -69.89 325.59 -2.66 -72.55 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -1.85 Total: 32.87 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 2.85 Total: -12.67 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -3.61 Total: -103.96 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -2.08 Total: -33.85 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -69.89 -2.66 -72.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707507974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.952 kcal (2) G-P(sol) polarization free energy of solvation -69.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds