Wall clock time and date at job start Mon Mar 30 2020 04:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 H 1.08989 * 109.47407 * 54.99632 * 11 10 9 13 13 N 1.46904 * 109.46937 * 294.99269 * 11 10 9 14 14 C 1.50703 * 109.47021 * 175.00079 * 11 10 9 15 15 O 1.21284 * 120.00053 * 99.99657 * 14 11 10 16 16 N 1.34778 * 119.99500 * 279.99392 * 14 11 10 17 17 C 1.47013 * 125.65199 * 0.02903 * 16 14 11 18 18 C 1.54326 * 107.27112 * 181.02140 * 17 16 14 19 19 C 1.55151 * 102.94177 * 22.19259 * 18 17 16 20 20 H 1.08997 * 111.00985 * 82.57551 * 19 18 17 21 21 C 1.53002 * 111.00415 * 206.38504 * 19 18 17 22 22 O 1.42904 * 109.47223 * 293.54904 * 21 19 18 23 23 C 1.47426 * 125.64153 * 179.71621 * 16 14 11 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.00896 * 111.00087 * 176.04298 * 13 11 10 30 30 H 1.00900 * 111.00049 * 300.00428 * 13 11 10 31 31 H 1.09007 * 109.88221 * 300.43667 * 17 16 14 32 32 H 1.08999 * 109.88571 * 61.60225 * 17 16 14 33 33 H 1.09006 * 110.72115 * 140.55542 * 18 17 16 34 34 H 1.08998 * 110.72051 * 263.82677 * 18 17 16 35 35 H 1.09002 * 109.46876 * 53.54602 * 21 19 18 36 36 H 1.08996 * 109.47426 * 173.54573 * 21 19 18 37 37 H 0.96697 * 114.00123 * 179.97438 * 22 21 19 38 38 H 1.08996 * 110.37050 * 274.74431 * 23 16 14 39 39 H 1.08997 * 110.36976 * 37.07435 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 1 0.7883 -5.0030 -0.8591 13 7 0.7279 -5.1244 1.2373 14 6 2.4547 -6.1293 -0.1459 15 8 2.7861 -6.7575 0.8372 16 7 2.9579 -6.4526 -1.3536 17 6 2.6438 -5.7779 -2.6214 18 6 3.4288 -6.5043 -3.7339 19 6 3.6996 -7.9003 -3.1133 20 1 2.8381 -8.5565 -3.2364 21 6 4.9569 -8.5327 -3.7134 22 8 4.7320 -8.8217 -5.0947 23 6 3.9196 -7.5375 -1.6211 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.8718 -3.6005 -0.9002 28 1 2.8717 -3.6084 0.8798 29 1 0.1634 -5.9607 1.2308 30 1 1.3474 -5.1125 2.0336 31 1 1.5739 -5.8419 -2.8203 32 1 2.9518 -4.7335 -2.5718 33 1 2.8245 -6.5943 -4.6367 34 1 4.3652 -5.9880 -3.9453 35 1 5.7929 -7.8396 -3.6187 36 1 5.1884 -9.4558 -3.1821 37 1 5.4893 -9.2250 -5.5406 38 1 4.9396 -7.1888 -1.4595 39 1 3.7070 -8.3980 -0.9867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709400177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:51 Heat of formation + Delta-G solvation = -99.804671 kcal Electronic energy + Delta-G solvation = -19348.839506 eV Core-core repulsion = 16290.608200 eV Total energy + Delta-G solvation = -3058.231305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21522 -38.22160 -36.53228 -35.19737 -32.79685 -32.16469 -30.08675 -29.60883 -27.03079 -25.41813 -23.70489 -22.57948 -20.68673 -20.26762 -19.04914 -17.71823 -17.22321 -16.54023 -16.23161 -15.49448 -15.19556 -15.04217 -14.42619 -14.23084 -13.75187 -13.58197 -13.45743 -12.94144 -12.81396 -12.28026 -12.16074 -11.92343 -11.55268 -11.41826 -11.23029 -10.93380 -10.87152 -10.64906 -10.51219 -10.31001 -10.10479 -9.76857 -9.36296 -8.98161 -8.63506 -8.35081 -8.20222 -5.93299 -3.95340 2.76396 2.99811 3.34159 3.41784 3.45614 3.76875 4.33175 4.39224 4.50455 4.69394 4.87992 4.96336 5.04769 5.09586 5.14619 5.21691 5.32917 5.42328 5.52027 5.56587 5.71080 5.74789 5.83169 5.89475 6.02208 6.25035 6.47840 6.67558 7.09462 7.24513 7.39856 7.58608 7.77116 7.80858 7.96874 8.13884 8.27097 8.49186 9.12784 9.67808 11.17646 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.004449 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.949780 B = 6291.711819 C = 7032.639116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.095 4.095 11 C 0.082 3.918 12 H 0.097 0.903 13 N -0.807 5.807 14 C 0.499 3.501 15 O -0.555 6.555 16 N -0.617 5.617 17 C 0.093 3.907 18 C -0.119 4.119 19 C -0.104 4.104 20 H 0.091 0.909 21 C 0.088 3.912 22 O -0.571 6.571 23 C 0.111 3.889 24 H 0.259 0.741 25 H 0.035 0.965 26 H 0.013 0.987 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.334 0.666 30 H 0.348 0.652 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.380 0.620 38 H 0.067 0.933 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.183 -17.158 -8.835 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.033 4.033 12 H 0.115 0.885 13 N -0.334 5.334 14 C 0.287 3.713 15 O -0.433 6.433 16 N -0.352 5.352 17 C -0.029 4.029 18 C -0.157 4.157 19 C -0.123 4.123 20 H 0.109 0.891 21 C 0.010 3.990 22 O -0.377 6.377 23 C -0.012 4.012 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.145 0.855 30 H 0.162 0.838 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.227 0.773 38 H 0.085 0.915 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.213 -16.378 -8.263 19.711 hybrid contribution 1.629 -0.214 -0.075 1.644 sum 8.841 -16.592 -8.338 20.567 Atomic orbital electron populations 1.69988 1.05946 1.26288 1.50929 1.24992 0.94798 0.99045 0.95491 0.86599 0.80101 0.84112 0.77535 1.19873 1.21096 1.21055 1.21315 0.92918 0.91302 1.50456 0.92960 1.19016 0.93537 0.89787 0.98210 1.21655 0.98892 0.92131 1.00620 1.21816 0.93398 0.93139 0.94969 0.88485 1.59020 1.26873 1.44239 1.03306 1.22550 0.82002 0.85785 0.80924 1.90644 1.61731 1.54409 1.36554 1.48609 1.45200 1.33742 1.07662 1.22216 1.00334 0.97748 0.82650 1.22632 1.01134 0.94204 0.97714 1.22370 0.98528 0.97397 0.93981 0.89089 1.22032 0.96398 0.98528 0.82086 1.86474 1.43399 1.84653 1.23128 1.22108 0.93487 0.91185 0.94447 0.93159 0.94668 0.96863 0.92837 0.92894 0.85465 0.83835 0.90934 0.90025 0.89550 0.90442 0.93141 0.93340 0.77296 0.91469 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.81 4.86 -27.88 -0.14 0.68 16 10 C -0.09 -1.96 4.77 -26.74 -0.13 -2.09 16 11 C 0.08 1.45 2.57 -68.86 -0.18 1.27 16 12 H 0.10 1.63 7.46 -51.94 -0.39 1.24 16 13 N -0.81 -14.12 8.44 -5.66 -0.05 -14.16 16 14 C 0.50 8.44 7.09 -10.98 -0.08 8.36 16 15 O -0.56 -10.79 16.50 5.55 0.09 -10.69 16 16 N -0.62 -8.58 3.32 -170.38 -0.57 -9.15 16 17 C 0.09 1.10 6.19 -3.07 -0.02 1.09 16 18 C -0.12 -1.14 6.28 -24.90 -0.16 -1.29 16 19 C -0.10 -0.96 3.34 -88.35 -0.30 -1.25 16 20 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 21 C 0.09 0.64 6.49 37.16 0.24 0.88 16 22 O -0.57 -4.42 13.51 -35.23 -0.48 -4.90 16 23 C 0.11 1.27 6.38 -2.41 -0.02 1.25 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.98 7.75 -51.93 -0.40 0.58 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 1.05 6.65 -51.93 -0.35 0.70 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.33 5.08 9.06 -39.29 -0.36 4.73 16 30 H 0.35 6.15 8.58 -39.29 -0.34 5.81 16 31 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 32 H 0.08 1.04 6.75 -51.93 -0.35 0.69 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.71 8.01 -51.93 -0.42 0.29 16 35 H 0.05 0.33 8.11 -51.93 -0.42 -0.09 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.38 1.23 9.12 45.56 0.42 1.64 16 38 H 0.07 0.73 8.04 -51.93 -0.42 0.32 16 39 H 0.08 0.92 8.03 -51.93 -0.42 0.50 16 LS Contribution 320.64 15.07 4.83 4.83 Total: -1.00 -33.99 320.64 -7.12 -41.11 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.50 Total: 7.07 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -1.17 Total: -4.64 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.12 Total: -49.53 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.38 Total: -15.59 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.99 -7.12 -41.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709400177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.692 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds