Wall clock time and date at job start Mon Mar 30 2020 04:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 H 1.08989 * 109.47407 * 54.99632 * 11 10 9 13 13 N 1.46904 * 109.46937 * 294.99269 * 11 10 9 14 14 C 1.50703 * 109.47021 * 175.00079 * 11 10 9 15 15 O 1.21284 * 120.00053 * 99.99657 * 14 11 10 16 16 N 1.34778 * 119.99500 * 279.99392 * 14 11 10 17 17 C 1.47013 * 125.65199 * 0.02903 * 16 14 11 18 18 C 1.54326 * 107.27112 * 181.02140 * 17 16 14 19 19 C 1.55151 * 102.94177 * 22.19259 * 18 17 16 20 20 H 1.08997 * 111.00985 * 82.57551 * 19 18 17 21 21 C 1.53002 * 111.00415 * 206.38504 * 19 18 17 22 22 O 1.42904 * 109.47223 * 293.54904 * 21 19 18 23 23 C 1.47426 * 125.64153 * 179.71621 * 16 14 11 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.00896 * 111.00087 * 176.04298 * 13 11 10 30 30 H 1.00900 * 111.00049 * 300.00428 * 13 11 10 31 31 H 1.09007 * 109.88221 * 300.43667 * 17 16 14 32 32 H 1.08999 * 109.88571 * 61.60225 * 17 16 14 33 33 H 1.09006 * 110.72115 * 140.55542 * 18 17 16 34 34 H 1.08998 * 110.72051 * 263.82677 * 18 17 16 35 35 H 1.09002 * 109.46876 * 53.54602 * 21 19 18 36 36 H 1.08996 * 109.47426 * 173.54573 * 21 19 18 37 37 H 0.96697 * 114.00123 * 179.97438 * 22 21 19 38 38 H 1.08996 * 110.37050 * 274.74431 * 23 16 14 39 39 H 1.08997 * 110.36976 * 37.07435 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 1 0.7883 -5.0030 -0.8591 13 7 0.7279 -5.1244 1.2373 14 6 2.4547 -6.1293 -0.1459 15 8 2.7861 -6.7575 0.8372 16 7 2.9579 -6.4526 -1.3536 17 6 2.6438 -5.7779 -2.6214 18 6 3.4288 -6.5043 -3.7339 19 6 3.6996 -7.9003 -3.1133 20 1 2.8381 -8.5565 -3.2364 21 6 4.9569 -8.5327 -3.7134 22 8 4.7320 -8.8217 -5.0947 23 6 3.9196 -7.5375 -1.6211 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.8718 -3.6005 -0.9002 28 1 2.8717 -3.6084 0.8798 29 1 0.1634 -5.9607 1.2308 30 1 1.3474 -5.1125 2.0336 31 1 1.5739 -5.8419 -2.8203 32 1 2.9518 -4.7335 -2.5718 33 1 2.8245 -6.5943 -4.6367 34 1 4.3652 -5.9880 -3.9453 35 1 5.7929 -7.8396 -3.6187 36 1 5.1884 -9.4558 -3.1821 37 1 5.4893 -9.2250 -5.5406 38 1 4.9396 -7.1888 -1.4595 39 1 3.7070 -8.3980 -0.9867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709400177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:51 Heat of formation + Delta-G solvation = -127.107108 kcal Electronic energy + Delta-G solvation = -19350.023428 eV Core-core repulsion = 16290.608200 eV Total energy + Delta-G solvation = -3059.415228 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.40322 -39.20492 -37.25157 -36.83659 -34.83005 -33.12501 -31.94995 -30.49941 -28.47960 -26.80538 -25.01487 -23.86795 -22.11848 -21.37538 -20.29469 -18.65663 -18.28442 -18.19026 -17.48338 -16.95679 -16.56758 -16.32480 -15.90903 -15.38158 -15.01402 -14.50936 -14.45519 -14.22118 -14.05366 -13.89034 -13.64335 -13.42303 -12.92735 -12.81945 -12.51380 -12.31533 -12.22162 -11.98160 -11.75506 -11.66483 -11.58606 -11.26246 -11.01154 -10.83902 -10.49543 -9.76869 -9.68542 -8.13792 -6.24187 1.40769 1.42201 1.43601 1.55404 1.88682 2.44819 3.10677 3.19321 3.44319 3.56641 3.59794 3.78460 4.02012 4.15369 4.22406 4.27442 4.33844 4.42279 4.49159 4.60261 4.66198 4.77175 4.84549 4.90894 4.95459 5.06354 5.20287 5.25200 5.31188 5.56862 5.82711 5.97590 6.05130 6.29644 6.35518 6.47501 6.93472 6.93990 6.97726 7.44007 8.97703 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.004449 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.949780 B = 6291.711819 C = 7032.639116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.041 3.959 10 C -0.080 4.080 11 C 0.090 3.910 12 H 0.105 0.895 13 N -0.817 5.817 14 C 0.500 3.500 15 O -0.584 6.584 16 N -0.614 5.614 17 C 0.086 3.914 18 C -0.111 4.111 19 C -0.095 4.095 20 H 0.086 0.914 21 C 0.091 3.909 22 O -0.589 6.589 23 C 0.107 3.893 24 H 0.262 0.738 25 H 0.006 0.994 26 H -0.006 1.006 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.346 0.654 30 H 0.346 0.654 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.399 0.601 38 H 0.076 0.924 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.678 -17.498 -10.132 22.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.004 3.996 10 C -0.118 4.118 11 C -0.025 4.025 12 H 0.123 0.877 13 N -0.346 5.346 14 C 0.288 3.712 15 O -0.465 6.465 16 N -0.347 5.347 17 C -0.036 4.036 18 C -0.149 4.149 19 C -0.114 4.114 20 H 0.105 0.895 21 C 0.013 3.987 22 O -0.398 6.398 23 C -0.015 4.015 24 H 0.071 0.929 25 H 0.024 0.976 26 H 0.013 0.987 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.250 0.750 38 H 0.094 0.906 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.731 -16.746 -9.608 21.189 hybrid contribution 1.145 -0.144 0.283 1.188 sum 9.876 -16.890 -9.326 21.674 Atomic orbital electron populations 1.70116 1.07643 1.27471 1.51731 1.25899 0.95696 1.03020 0.94923 0.85473 0.79047 0.79211 0.77735 1.18814 1.20200 1.20691 1.21738 0.93321 0.92661 1.50394 0.92662 1.18811 0.93782 0.91241 0.95770 1.21372 0.97789 0.92041 1.00616 1.21585 0.93528 0.92089 0.95348 0.87706 1.58995 1.27149 1.45249 1.03236 1.22147 0.81966 0.85511 0.81556 1.90628 1.62739 1.55392 1.37729 1.48636 1.44662 1.34062 1.07378 1.22395 1.01231 0.97457 0.82506 1.22612 1.01237 0.94037 0.96967 1.22297 0.99586 0.97240 0.92309 0.89517 1.21972 0.95306 0.99241 0.82163 1.86412 1.45073 1.85034 1.23248 1.22277 0.93134 0.90142 0.95991 0.92906 0.97606 0.98730 0.91662 0.93973 0.84031 0.84061 0.90374 0.90926 0.88629 0.89647 0.92129 0.92085 0.75031 0.90626 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 4 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.04 2.17 4.86 29.85 0.15 2.31 16 10 C -0.08 -3.33 4.77 30.59 0.15 -3.18 16 11 C 0.09 3.17 2.57 44.17 0.11 3.29 16 12 H 0.11 3.51 7.46 -2.39 -0.02 3.49 16 13 N -0.82 -28.96 8.44 -171.81 -1.45 -30.41 16 14 C 0.50 16.70 7.09 87.66 0.62 17.32 16 15 O -0.58 -22.57 16.50 -3.04 -0.05 -22.62 16 16 N -0.61 -16.42 3.32 -811.35 -2.70 -19.12 16 17 C 0.09 1.93 6.19 86.73 0.54 2.46 16 18 C -0.11 -1.87 6.28 31.78 0.20 -1.67 16 19 C -0.10 -1.55 3.34 -9.32 -0.03 -1.58 16 20 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 21 C 0.09 1.08 6.49 71.98 0.47 1.55 16 22 O -0.59 -7.48 13.51 -148.98 -2.01 -9.49 16 23 C 0.11 2.27 6.38 86.93 0.55 2.83 16 24 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 25 H 0.01 0.32 7.75 -2.38 -0.02 0.30 16 26 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.06 2.53 6.65 -2.38 -0.02 2.52 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.35 10.58 9.06 -89.70 -0.81 9.77 16 30 H 0.35 12.45 8.58 -89.69 -0.77 11.68 16 31 H 0.08 1.66 7.85 -2.38 -0.02 1.64 16 32 H 0.07 1.77 6.75 -2.39 -0.02 1.76 16 33 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.08 1.33 8.01 -2.39 -0.02 1.31 16 35 H 0.06 0.61 8.11 -2.39 -0.02 0.59 16 36 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.40 1.46 9.12 -74.06 -0.68 0.78 16 38 H 0.08 1.50 8.04 -2.39 -0.02 1.49 16 39 H 0.07 1.62 8.03 -2.39 -0.02 1.60 16 Total: -1.00 -72.39 320.64 -1.64 -74.04 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -1.19 Total: 24.45 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 3.45 Total: -6.86 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -3.86 Total: -106.04 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -2.06 Total: -32.11 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -72.39 -1.64 -74.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709400177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.072 kcal (2) G-P(sol) polarization free energy of solvation -72.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds