Wall clock time and date at job start Mon Mar 30 2020 04:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42895 * 110.78511 * 2 1 4 4 C 1.55405 * 110.85058 * 123.29713 * 2 1 3 5 5 C 1.54914 * 101.66697 * 153.70010 * 4 2 1 6 6 N 1.47426 * 104.82992 * 323.07703 * 5 4 2 7 7 C 1.34775 * 125.64489 * 204.09098 * 6 5 4 8 8 O 1.21282 * 119.99810 * 180.02562 * 7 6 5 9 9 C 1.50698 * 120.00280 * 0.04405 * 7 6 5 10 10 H 1.09001 * 109.47237 * 319.99859 * 9 7 6 11 11 N 1.46899 * 109.47304 * 199.99609 * 9 7 6 12 12 C 1.53002 * 109.47488 * 79.99580 * 9 7 6 13 13 C 1.53004 * 109.47283 * 185.00123 * 12 9 7 14 14 C 1.50696 * 109.47112 * 180.02562 * 13 12 9 15 15 H 1.08008 * 119.99882 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00374 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99501 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00437 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47227 * 89.99874 * 18 16 14 20 20 H 1.48501 * 109.47031 * 210.00062 * 18 16 14 21 21 H 1.48496 * 109.47273 * 330.00010 * 18 16 14 22 22 C 1.47018 * 108.70517 * 24.12623 * 6 5 4 23 23 H 1.09003 * 109.47145 * 183.24016 * 1 2 3 24 24 H 1.09001 * 109.47504 * 303.24102 * 1 2 3 25 25 H 1.09003 * 109.47041 * 63.24277 * 1 2 3 26 26 H 0.96705 * 114.00290 * 56.75160 * 3 2 1 27 27 H 1.09000 * 110.89538 * 35.62814 * 4 2 1 28 28 H 1.09000 * 111.06973 * 271.84658 * 4 2 1 29 29 H 1.08999 * 110.37121 * 204.23438 * 5 4 2 30 30 H 1.09001 * 110.45739 * 81.96050 * 5 4 2 31 31 H 1.00896 * 111.00170 * 300.00519 * 11 9 7 32 32 H 1.00904 * 110.99836 * 63.95258 * 11 9 7 33 33 H 1.08993 * 109.46943 * 305.00511 * 12 9 7 34 34 H 1.08996 * 109.46710 * 64.99958 * 12 9 7 35 35 H 1.08999 * 109.46773 * 300.00040 * 13 12 9 36 36 H 1.09000 * 109.46706 * 60.00007 * 13 12 9 37 37 H 0.97000 * 119.99681 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.88241 * 118.36067 * 22 6 5 39 39 H 1.09000 * 109.88049 * 239.37196 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0370 1.3360 0.0000 4 6 2.0831 -0.7973 1.2139 5 6 3.4656 -1.2541 0.6849 6 7 3.2438 -1.5535 -0.7415 7 6 3.9886 -2.3874 -1.4941 8 8 3.7132 -2.5587 -2.6627 9 6 5.1633 -3.1072 -0.8834 10 1 5.6932 -2.4326 -0.2109 11 7 6.0728 -3.5514 -1.9481 12 6 4.6651 -4.3223 -0.0984 13 6 5.8424 -4.9808 0.6235 14 6 5.3517 -6.1780 1.3962 15 1 4.3049 -6.4429 1.3742 16 6 6.2391 -6.9351 2.1312 17 7 7.5137 -6.6122 2.1584 18 14 5.6310 -8.4195 3.0884 19 1 5.6998 -9.6266 2.2262 20 1 6.4839 -8.6184 4.2877 21 1 4.2259 -8.1935 3.5124 22 6 2.0760 -0.7913 -1.2072 23 1 -0.3633 -1.0260 0.0581 24 1 -0.3634 0.5633 0.8595 25 1 -0.3633 0.4627 -0.9177 26 1 1.7238 1.8756 0.7388 27 1 1.4480 -1.6543 1.4381 28 1 2.1919 -0.1550 2.0878 29 1 3.7975 -2.1479 1.2131 30 1 4.1987 -0.4550 0.7952 31 1 5.6047 -4.1783 -2.5852 32 1 6.4659 -2.7630 -2.4401 33 1 3.9230 -4.0028 0.6332 34 1 4.2135 -5.0381 -0.7851 35 1 6.5845 -5.3003 -0.1081 36 1 6.2940 -4.2648 1.3102 37 1 8.1381 -7.1451 2.6752 38 1 2.3741 -0.1026 -1.9977 39 1 1.3121 -1.4740 -1.5791 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709402736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:38 Heat of formation + Delta-G solvation = -124.391862 kcal Electronic energy + Delta-G solvation = -19664.019166 eV Core-core repulsion = 16604.721680 eV Total energy + Delta-G solvation = -3059.297486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.51306 -39.63293 -36.85800 -36.48247 -34.82446 -32.65746 -31.95604 -30.70449 -28.85976 -27.32759 -25.21983 -23.98786 -22.22114 -21.42304 -20.40652 -18.69237 -18.22131 -17.86413 -17.08721 -16.87380 -16.53054 -16.35592 -15.78509 -15.37787 -15.09404 -14.40164 -14.15666 -14.09121 -13.95011 -13.88209 -13.56237 -13.43505 -13.04528 -12.80407 -12.62497 -12.50528 -12.36003 -12.26182 -11.79356 -11.71566 -11.66996 -11.26446 -11.02458 -10.90643 -10.48656 -9.80252 -9.70286 -8.13048 -6.23619 1.39910 1.43311 1.44391 1.54731 1.86737 2.45384 3.05231 3.20144 3.36325 3.47365 3.58252 3.75386 3.82258 4.04180 4.21317 4.26083 4.30799 4.52151 4.58452 4.65561 4.73986 4.79816 4.89922 4.94361 4.98672 5.09661 5.18556 5.23188 5.27629 5.57110 5.82703 5.97817 6.03632 6.29716 6.33454 6.45357 6.88411 6.94288 6.95516 7.44639 8.98314 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.024639 B = 0.004847 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.129570 B = 5775.974440 C = 6421.179392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.126 3.874 3 O -0.567 6.567 4 C -0.149 4.149 5 C 0.087 3.913 6 N -0.613 5.613 7 C 0.498 3.502 8 O -0.586 6.586 9 C 0.091 3.909 10 H 0.104 0.896 11 N -0.817 5.817 12 C -0.080 4.080 13 C 0.041 3.959 14 C -0.543 4.543 15 H 0.056 0.944 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.960 3.040 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.262 1.262 22 C 0.108 3.892 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.399 0.601 27 H 0.092 0.908 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.346 0.654 32 H 0.346 0.654 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.005 0.995 36 H -0.005 1.005 37 H 0.262 0.738 38 H 0.057 0.943 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.143 16.064 -0.168 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.085 3.915 3 O -0.377 6.377 4 C -0.186 4.186 5 C -0.035 4.035 6 N -0.346 5.346 7 C 0.286 3.714 8 O -0.467 6.467 9 C -0.024 4.024 10 H 0.122 0.878 11 N -0.345 5.345 12 C -0.118 4.118 13 C 0.004 3.996 14 C -0.581 4.581 15 H 0.074 0.926 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.785 3.215 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.186 1.186 22 C -0.014 4.014 23 H 0.091 0.909 24 H 0.108 0.892 25 H 0.084 0.916 26 H 0.250 0.750 27 H 0.111 0.889 28 H 0.136 0.864 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.023 0.977 36 H 0.013 0.987 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.337 15.345 -0.698 20.343 hybrid contribution -0.710 -0.206 0.038 0.740 sum -14.048 15.139 -0.660 20.663 Atomic orbital electron populations 1.22300 0.92011 1.03895 1.04009 1.22041 0.93904 0.82600 0.92935 1.86539 1.74268 1.22719 1.54165 1.23562 0.94757 1.01754 0.98577 1.22658 0.99704 1.01682 0.79461 1.48648 1.29897 1.43453 1.12593 1.22235 0.84746 0.78371 0.86040 1.90625 1.72117 1.65757 1.18185 1.21587 0.89271 0.96831 0.94744 0.87771 1.59013 1.36285 1.21360 1.17868 1.21396 0.99042 0.93974 0.97378 1.18813 0.93138 0.93871 0.93793 1.21698 0.94584 1.12646 1.29169 0.92573 1.25892 0.94969 1.00752 0.97853 1.70113 1.03454 1.40939 1.42508 0.85530 0.78619 0.79316 0.78053 1.20280 1.20721 1.18645 1.22019 0.88146 0.93985 0.97286 0.90914 0.89158 0.91637 0.74977 0.88949 0.86383 0.90043 0.90242 0.84049 0.84098 0.91423 0.93913 0.97676 0.98672 0.92918 0.92431 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.82 71.98 0.63 -1.15 16 2 C 0.13 2.01 1.29 -9.52 -0.01 2.00 16 3 O -0.57 -8.91 13.11 -148.98 -1.95 -10.86 16 4 C -0.15 -2.23 6.27 32.08 0.20 -2.02 16 5 C 0.09 1.95 6.39 86.86 0.55 2.50 16 6 N -0.61 -17.35 3.33 -811.79 -2.70 -20.05 16 7 C 0.50 17.32 7.09 87.66 0.62 17.94 16 8 O -0.59 -23.65 16.58 -3.04 -0.05 -23.70 16 9 C 0.09 3.28 2.43 44.17 0.11 3.38 16 10 H 0.10 3.56 7.68 -2.39 -0.02 3.54 16 11 N -0.82 -29.50 8.44 -171.80 -1.45 -30.95 16 12 C -0.08 -3.30 4.64 30.60 0.14 -3.16 16 13 C 0.04 2.15 4.86 29.85 0.15 2.30 16 14 C -0.54 -30.76 9.11 25.60 0.23 -30.53 16 15 H 0.06 3.06 7.74 -2.91 -0.02 3.03 16 16 C 0.00 0.18 5.46 84.65 0.46 0.65 16 17 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 18 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 22 C 0.11 2.64 6.22 86.73 0.54 3.18 16 23 H 0.07 0.81 8.11 -2.39 -0.02 0.79 16 24 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.40 2.39 9.08 -74.05 -0.67 1.72 16 27 H 0.09 1.35 8.02 -2.39 -0.02 1.33 16 28 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 2.02 6.05 -2.39 -0.01 2.01 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.35 12.68 8.58 -89.70 -0.77 11.91 16 32 H 0.35 10.92 9.06 -89.69 -0.81 10.11 16 33 H 0.07 2.59 6.59 -2.39 -0.02 2.57 16 34 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.00 0.28 7.75 -2.39 -0.02 0.26 16 36 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.06 1.59 8.07 -2.39 -0.02 1.57 16 39 H 0.08 1.89 7.82 -2.39 -0.02 1.87 16 Total: -1.00 -73.13 319.88 -1.40 -74.53 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -1.19 Total: 26.13 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 3.63 Total: -4.90 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -3.87 Total: -107.34 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -2.00 Total: -34.57 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -73.13 -1.40 -74.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709402736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.858 kcal (2) G-P(sol) polarization free energy of solvation -73.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds