Wall clock time and date at job start Mon Mar 30 2020 04:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47411 * 2 1 4 4 H 1.09000 * 110.54776 * 56.42378 * 3 2 1 5 5 C 1.54996 * 110.61898 * 179.47814 * 3 2 1 6 6 C 1.54809 * 102.09323 * 155.52520 * 5 3 2 7 7 H 1.08993 * 110.60067 * 97.84681 * 6 5 3 8 8 N 1.46898 * 110.48521 * 220.44236 * 6 5 3 9 9 C 1.46903 * 110.99849 * 201.21827 * 8 6 5 10 10 C 1.50694 * 109.47066 * 179.97438 * 9 8 6 11 11 O 1.21283 * 120.00363 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99988 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99864 * 179.72721 * 12 10 9 14 14 C 1.50698 * 109.47082 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99736 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00453 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00486 * 179.97438 * 16 14 13 18 18 Si 1.86808 * 119.99592 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46875 * 90.00466 * 18 16 14 20 20 H 1.48497 * 109.46872 * 210.00530 * 18 16 14 21 21 H 1.48498 * 109.46804 * 330.00027 * 18 16 14 22 22 C 1.54105 * 104.18527 * 339.11503 * 6 5 3 23 23 O 1.43740 * 107.29524 * 357.97472 * 22 6 5 24 24 H 1.09001 * 109.47441 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46885 * 300.00035 * 1 2 3 26 26 H 1.08999 * 109.47244 * 60.00087 * 1 2 3 27 27 H 1.08996 * 109.47288 * 239.99670 * 2 1 3 28 28 H 1.08999 * 109.47244 * 119.99913 * 2 1 3 29 29 H 1.09004 * 110.90697 * 37.32027 * 5 3 2 30 30 H 1.09001 * 110.90254 * 273.72444 * 5 3 2 31 31 H 1.00899 * 111.00040 * 325.17246 * 8 6 5 32 32 H 1.08998 * 109.46809 * 60.00017 * 9 8 6 33 33 H 1.09002 * 109.47056 * 299.99758 * 9 8 6 34 34 H 0.97000 * 119.99339 * 0.02562 * 12 10 9 35 35 H 1.09007 * 109.47196 * 299.99538 * 13 12 10 36 36 H 1.09006 * 109.47678 * 59.99732 * 13 12 10 37 37 H 0.96993 * 120.00178 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.87625 * 117.39741 * 22 6 5 39 39 H 1.08996 * 109.87882 * 238.54457 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6354 1.9914 0.8504 5 6 3.5896 1.4735 0.0132 6 6 3.8918 2.8555 -0.6155 7 1 4.0870 3.5955 0.1605 8 7 5.0335 2.7633 -1.5353 9 6 5.6474 4.0812 -1.7460 10 6 6.8126 3.9470 -2.6922 11 8 7.1034 2.8605 -3.1460 12 7 7.5323 5.0343 -3.0334 13 6 8.6687 4.9029 -3.9485 14 6 9.2985 6.2547 -4.1648 15 1 8.8925 7.1249 -3.6703 16 6 10.3923 6.3810 -4.9946 17 7 10.9416 7.5608 -5.1837 18 14 11.0940 4.8760 -5.8505 19 1 10.4283 4.6994 -7.1660 20 1 12.5535 5.0583 -6.0547 21 1 10.8580 3.6742 -5.0108 22 6 2.6052 3.2090 -1.3866 23 8 1.7006 2.1018 -1.2388 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.0000 0.6698 -0.5982 30 1 3.9710 1.4182 1.0328 31 1 5.7136 2.0967 -1.2018 32 1 5.9979 4.4754 -0.7922 33 1 4.9099 4.7617 -2.1715 34 1 7.3004 5.9031 -2.6696 35 1 9.4051 4.2241 -3.5182 36 1 8.3227 4.5059 -4.9030 37 1 11.7113 7.6496 -5.7673 38 1 2.1584 4.1110 -0.9683 39 1 2.8351 3.3617 -2.4410 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711216208.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:31 Heat of formation + Delta-G solvation = -116.952115 kcal Electronic energy + Delta-G solvation = -18705.002423 eV Core-core repulsion = 15646.027549 eV Total energy + Delta-G solvation = -3058.974874 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.86916 -40.27452 -36.65015 -36.01027 -34.42544 -34.40577 -31.93498 -30.18542 -28.81966 -26.84758 -24.56215 -23.76441 -22.09562 -21.50425 -21.35120 -19.19884 -17.93164 -17.84565 -17.17187 -16.85063 -16.58799 -16.21185 -16.11186 -15.35803 -15.06530 -14.76073 -14.52387 -14.38054 -14.07326 -14.03576 -13.77764 -13.22103 -13.08134 -12.74098 -12.65515 -12.48608 -12.32480 -12.06038 -11.94159 -11.75506 -11.66293 -11.49944 -10.92766 -10.79318 -10.55840 -9.93695 -9.46044 -8.40823 -6.47716 1.32246 1.34545 1.46818 1.73558 2.26916 2.31789 2.94602 2.96206 3.17607 3.49679 3.82242 3.92716 4.11080 4.15152 4.25688 4.29765 4.38700 4.43221 4.51371 4.63911 4.72047 4.79789 4.85450 4.92730 4.95702 5.02444 5.08784 5.11663 5.25625 5.28364 5.44556 5.52031 5.86144 6.05648 6.10801 6.27550 6.53577 6.86262 7.15378 7.42706 8.73809 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.058278 B = 0.003138 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.343004 B = 8920.325831 C = 9132.722955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.074 3.926 4 H 0.084 0.916 5 C -0.149 4.149 6 C 0.056 3.944 7 H 0.083 0.917 8 N -0.680 5.680 9 C 0.053 3.947 10 C 0.497 3.503 11 O -0.588 6.588 12 N -0.707 5.707 13 C 0.232 3.768 14 C -0.546 4.546 15 H 0.061 0.939 16 C 0.026 3.974 17 N -0.931 5.931 18 Si 0.938 3.062 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.261 1.261 22 C 0.051 3.949 23 O -0.396 6.396 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.351 0.649 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.410 0.590 35 H 0.012 0.988 36 H 0.008 0.992 37 H 0.272 0.728 38 H 0.075 0.925 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.537 -11.062 14.924 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C 0.017 3.983 4 H 0.102 0.898 5 C -0.187 4.187 6 C -0.054 4.054 7 H 0.100 0.900 8 N -0.314 5.314 9 C -0.079 4.079 10 C 0.284 3.716 11 O -0.468 6.468 12 N -0.357 5.357 13 C 0.108 3.892 14 C -0.584 4.584 15 H 0.079 0.921 16 C -0.175 4.175 17 N -0.570 5.570 18 Si 0.761 3.239 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.185 1.185 22 C -0.026 4.026 23 O -0.315 6.315 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.171 0.829 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.245 0.755 35 H 0.030 0.970 36 H 0.026 0.974 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.729 -11.741 13.795 26.056 hybrid contribution 1.266 0.410 0.196 1.345 sum -17.462 -11.331 13.991 25.081 Atomic orbital electron populations 1.21700 0.95087 1.02001 1.01812 1.21597 0.96911 0.93973 1.03091 1.23301 0.93153 0.94573 0.87254 0.89811 1.23358 0.96507 0.96318 1.02482 1.23007 0.91044 0.98434 0.92904 0.89957 1.60189 1.12001 1.07955 1.51252 1.21845 0.94261 0.93473 0.98350 1.21338 0.84215 0.83655 0.82391 1.90642 1.71015 1.28333 1.56820 1.46016 1.31222 1.10980 1.47504 1.19066 0.85024 0.96045 0.89019 1.21301 1.14378 0.93401 1.29327 0.92125 1.25605 0.96538 0.98763 0.96562 1.69974 1.23638 1.24791 1.38556 0.85855 0.78234 0.80097 0.79676 1.19161 1.19776 1.18506 1.23305 0.88380 0.89529 1.01402 1.88877 1.56379 1.44648 1.41623 0.91886 0.91951 0.93780 0.92418 0.88722 0.90568 0.87812 0.82897 0.89251 0.86370 0.75479 0.96999 0.97370 0.91843 0.90738 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.83 71.98 0.71 -1.31 16 2 C -0.12 -1.67 5.71 30.59 0.17 -1.49 16 3 C 0.07 1.18 3.33 31.28 0.10 1.28 16 4 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 5 C -0.15 -2.24 6.06 31.89 0.19 -2.05 16 6 C 0.06 0.96 3.36 45.91 0.15 1.12 16 7 H 0.08 1.08 7.87 -2.39 -0.02 1.06 16 8 N -0.68 -16.09 5.81 -490.47 -2.85 -18.94 16 9 C 0.05 1.23 6.01 85.55 0.51 1.75 16 10 C 0.50 17.86 7.87 87.65 0.69 18.55 16 11 O -0.59 -26.35 16.20 -3.04 -0.05 -26.40 16 12 N -0.71 -27.47 5.55 -466.78 -2.59 -30.06 16 13 C 0.23 11.38 4.50 85.63 0.38 11.76 16 14 C -0.55 -30.03 9.83 25.60 0.25 -29.78 16 15 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 16 C 0.03 1.45 5.47 84.66 0.46 1.91 16 17 N -0.93 -55.51 13.96 21.45 0.30 -55.21 16 18 Si 0.94 44.26 27.47 68.60 1.88 46.14 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.26 -12.21 6.54 99.48 0.65 -11.56 16 22 C 0.05 1.01 7.42 72.36 0.54 1.55 16 23 O -0.40 -8.91 10.89 -148.98 -1.62 -10.53 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.04 0.75 7.92 -2.39 -0.02 0.74 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 1.39 7.92 -2.39 -0.02 1.37 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.35 8.68 8.12 -89.69 -0.73 7.95 16 32 H 0.09 1.59 8.08 -2.39 -0.02 1.57 16 33 H 0.12 2.36 8.12 -2.39 -0.02 2.34 16 34 H 0.41 13.62 8.32 -92.71 -0.77 12.85 16 35 H 0.01 0.62 7.20 -2.38 -0.02 0.60 16 36 H 0.01 0.43 7.57 -2.38 -0.02 0.41 16 37 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.78 7.93 -2.39 -0.02 1.76 16 Total: -1.00 -70.19 322.21 -1.27 -71.46 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -0.51 Total: 20.26 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 4.17 Total: 3.29 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -5.14 Total: -104.22 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -1.67 Total: -36.93 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.14 kcal Total: -70.19 -1.27 -71.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711216208.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.496 kcal (2) G-P(sol) polarization free energy of solvation -70.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds