Wall clock time and date at job start Mon Mar 30 2020 04:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47418 * 2 1 4 4 H 1.09009 * 109.47059 * 304.90326 * 3 2 1 5 5 C 1.50700 * 109.47446 * 184.89987 * 3 2 1 6 6 H 1.08000 * 120.00037 * 245.44883 * 5 3 2 7 7 C 1.37869 * 119.99792 * 65.45188 * 5 3 2 8 8 N 1.31516 * 120.00335 * 9.46545 * 7 5 3 9 9 Si 1.86800 * 119.99968 * 189.47173 * 7 5 3 10 10 H 1.48497 * 109.47275 * 84.98997 * 9 7 5 11 11 H 1.48500 * 109.47321 * 204.99137 * 9 7 5 12 12 H 1.48502 * 109.47119 * 324.99200 * 9 7 5 13 13 N 1.46502 * 109.47424 * 64.89680 * 3 2 1 14 14 C 1.34779 * 120.00235 * 275.00889 * 13 3 2 15 15 O 1.21286 * 119.99729 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99937 * 179.97438 * 14 13 3 17 17 H 1.08991 * 110.98632 * 304.19009 * 16 14 13 18 18 C 1.54939 * 111.16309 * 68.42055 * 16 14 13 19 19 O 1.43648 * 105.13936 * 154.38090 * 18 16 14 20 20 C 1.43242 * 109.96820 * 335.56442 * 19 18 16 21 21 H 1.09001 * 109.82515 * 121.31446 * 20 19 18 22 22 C 1.52998 * 109.83055 * 242.20205 * 20 19 18 23 23 N 1.46900 * 109.46970 * 298.54437 * 22 20 19 24 24 C 1.54387 * 107.58896 * 1.71731 * 20 19 18 25 25 H 1.09002 * 109.46922 * 60.00078 * 1 2 3 26 26 H 1.08997 * 109.47414 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47280 * 300.00284 * 1 2 3 28 28 H 1.08994 * 109.47368 * 239.99744 * 2 1 3 29 29 H 1.09002 * 109.46922 * 119.99922 * 2 1 3 30 30 H 0.96998 * 120.00089 * 179.97438 * 8 7 5 31 31 H 0.97002 * 119.99904 * 95.00041 * 13 3 2 32 32 H 1.09006 * 110.31544 * 35.45821 * 18 16 14 33 33 H 1.09003 * 110.30709 * 273.29190 * 18 16 14 34 34 H 1.08993 * 109.47194 * 58.54769 * 22 20 19 35 35 H 1.09004 * 109.46839 * 178.54897 * 22 20 19 36 36 H 1.00900 * 110.99806 * 56.05186 * 23 22 20 37 37 H 1.00903 * 110.99654 * 180.02562 * 23 22 20 38 38 H 1.08995 * 110.84684 * 139.54728 * 24 20 19 39 39 H 1.09001 * 110.84097 * 263.16649 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6067 1.9810 -0.8429 5 6 3.5421 1.4442 -0.1214 6 1 4.1493 1.8090 0.6939 7 6 4.1412 0.9800 -1.2731 8 7 3.4097 0.7113 -2.3325 9 14 5.9919 0.7326 -1.3289 10 1 6.3289 -0.6067 -0.7833 11 1 6.4618 0.8273 -2.7344 12 1 6.6562 1.7808 -0.5132 13 7 1.6504 2.0983 1.2507 14 6 0.4329 2.6652 1.3636 15 8 -0.3401 2.6328 0.4295 16 6 0.0319 3.3393 2.6504 17 1 0.1240 2.6557 3.4943 18 6 0.8550 4.6308 2.8854 19 8 0.0264 5.4573 3.7183 20 6 -1.3500 5.0993 3.5480 21 1 -1.7749 4.7983 4.5056 22 6 -2.1300 6.2892 2.9852 23 7 -2.0637 7.4102 3.9322 24 6 -1.4056 3.9192 2.5541 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8312 0.3851 -3.1429 31 1 2.2687 2.1244 1.9977 32 1 1.0553 5.1297 1.9371 33 1 1.7895 4.3964 3.3952 34 1 -1.6942 6.5916 2.0330 35 1 -3.1707 6.0025 2.8338 36 1 -1.1064 7.6527 4.1390 37 1 -2.5721 8.2089 3.5832 38 1 -2.1436 3.1814 2.8689 39 1 -1.6147 4.2723 1.5443 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713810116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:42 Heat of formation + Delta-G solvation = -99.694754 kcal Electronic energy + Delta-G solvation = -19791.454976 eV Core-core repulsion = 16733.228437 eV Total energy + Delta-G solvation = -3058.226539 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14207 -38.42504 -35.12472 -34.49753 -32.53431 -32.11729 -30.97047 -29.34217 -26.98556 -24.63066 -23.57040 -22.46864 -20.99909 -20.01457 -19.32369 -17.50967 -16.94526 -16.18454 -15.63691 -15.47241 -15.02864 -14.77606 -14.38102 -14.29941 -13.76387 -13.43883 -12.84963 -12.79730 -12.57186 -12.10864 -11.94904 -11.54764 -11.40865 -11.20775 -11.11815 -10.96489 -10.87527 -10.80280 -10.38986 -10.23387 -9.74774 -9.62600 -9.15345 -9.01933 -8.82073 -8.51891 -7.90932 -6.18452 -4.24160 3.22402 3.25581 3.29806 3.30807 3.64117 4.09131 4.33436 4.42437 4.46086 4.93764 4.95438 5.08988 5.14404 5.15404 5.32068 5.49365 5.56374 5.71771 5.73288 5.88822 5.97152 6.21864 6.29951 6.33780 6.54582 6.87627 6.93663 7.02394 7.11353 7.26832 7.30958 7.35914 7.56127 7.66514 7.79120 8.03113 8.60765 8.74725 9.06326 9.42014 10.89698 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.031777 B = 0.004816 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.925057 B = 5812.979882 C = 6331.899547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.512 3.488 15 O -0.544 6.544 16 C -0.149 4.149 17 H 0.105 0.895 18 C 0.065 3.935 19 O -0.378 6.378 20 C 0.081 3.919 21 H 0.087 0.913 22 C 0.051 3.949 23 N -0.849 5.849 24 C -0.129 4.129 25 H 0.051 0.949 26 H 0.023 0.977 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.348 0.652 37 H 0.338 0.662 38 H 0.085 0.915 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.968 6.773 10.510 14.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.166 3.834 4 H 0.074 0.926 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.296 3.704 15 O -0.423 6.423 16 C -0.170 4.170 17 H 0.123 0.877 18 C -0.011 4.011 19 O -0.297 6.297 20 C 0.023 3.977 21 H 0.105 0.895 22 C -0.080 4.080 23 N -0.379 5.379 24 C -0.168 4.168 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.161 0.839 37 H 0.150 0.850 38 H 0.103 0.897 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.795 6.336 10.239 14.343 hybrid contribution 1.750 0.047 -0.680 1.878 sum -6.044 6.383 9.559 12.987 Atomic orbital electron populations 1.21842 0.98054 0.98190 1.01454 1.21852 0.92952 0.99891 1.01210 1.18812 0.94396 0.88912 0.81270 0.92615 1.21170 0.90543 1.44154 1.01838 0.92073 1.24881 0.98479 0.95091 0.94968 1.69981 1.35790 1.43679 1.02149 0.86534 0.84973 0.78750 0.77291 1.20403 1.21163 1.19888 1.46506 1.14476 1.55678 1.18588 1.19874 0.82902 0.79390 0.88268 1.90674 1.51576 1.59891 1.40157 1.23051 0.96871 0.98446 0.98675 0.87678 1.23296 0.93932 0.88541 0.95368 1.88385 1.16350 1.59784 1.65172 1.22849 0.82605 0.93320 0.98931 0.89506 1.22183 1.00196 0.92026 0.93567 1.58700 1.20358 1.10708 1.48137 1.22996 0.95832 0.96768 1.01170 0.92970 0.95749 0.94095 0.90217 0.94695 0.92523 0.77965 0.91636 0.88968 0.94936 0.90158 0.83903 0.85039 0.89669 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.65 16 2 C -0.12 -2.81 5.50 -26.74 -0.15 -2.96 16 3 C 0.27 6.52 2.11 -69.08 -0.15 6.38 16 4 H 0.06 1.60 7.52 -51.92 -0.39 1.21 16 5 C -0.54 -13.89 8.66 -34.44 -0.30 -14.19 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.85 5.16 -17.82 -0.09 1.76 16 8 N -0.88 -24.52 12.16 55.43 0.67 -23.85 16 9 Si 0.90 20.30 29.55 -169.99 -5.02 15.28 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.71 -13.84 5.02 -54.93 -0.28 -14.12 16 14 C 0.51 9.48 5.72 -10.98 -0.06 9.42 16 15 O -0.54 -12.01 12.85 5.55 0.07 -11.94 16 16 C -0.15 -2.06 3.48 -89.52 -0.31 -2.37 16 17 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 18 C 0.07 0.86 7.25 38.18 0.28 1.14 16 19 O -0.38 -4.98 10.42 -35.23 -0.37 -5.35 16 20 C 0.08 0.95 3.80 -26.01 -0.10 0.85 16 21 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 22 C 0.05 0.56 6.38 -3.82 -0.02 0.53 16 23 N -0.85 -8.52 9.62 -10.37 -0.10 -8.62 16 24 C -0.13 -1.66 5.70 -24.78 -0.14 -1.80 16 25 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.85 5.65 -51.93 -0.29 0.55 16 28 H 0.08 2.06 6.80 -51.93 -0.35 1.71 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.39 6.60 8.53 -40.82 -0.35 6.25 16 32 H 0.07 0.94 8.02 -51.93 -0.42 0.53 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.35 3.56 8.45 -39.29 -0.33 3.23 16 37 H 0.34 2.71 9.08 -39.29 -0.36 2.36 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.09 1.36 7.06 -51.93 -0.37 0.99 16 LS Contribution 313.34 15.07 4.72 4.72 Total: -1.00 -29.44 313.34 -7.21 -36.66 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.19 Total: 11.11 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -0.73 Total: -3.89 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.30 Total: -46.58 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.30 Total: -17.29 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.44 -7.21 -36.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713810116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.039 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds