Wall clock time and date at job start Mon Mar 30 2020 04:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47418 * 2 1 4 4 H 1.09009 * 109.47059 * 304.90326 * 3 2 1 5 5 C 1.50700 * 109.47446 * 184.89987 * 3 2 1 6 6 H 1.08000 * 120.00037 * 245.44883 * 5 3 2 7 7 C 1.37869 * 119.99792 * 65.45188 * 5 3 2 8 8 N 1.31516 * 120.00335 * 9.46545 * 7 5 3 9 9 Si 1.86800 * 119.99968 * 189.47173 * 7 5 3 10 10 H 1.48497 * 109.47275 * 84.98997 * 9 7 5 11 11 H 1.48500 * 109.47321 * 204.99137 * 9 7 5 12 12 H 1.48502 * 109.47119 * 324.99200 * 9 7 5 13 13 N 1.46502 * 109.47424 * 64.89680 * 3 2 1 14 14 C 1.34779 * 120.00235 * 275.00889 * 13 3 2 15 15 O 1.21286 * 119.99729 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99937 * 179.97438 * 14 13 3 17 17 H 1.08991 * 110.98632 * 304.19009 * 16 14 13 18 18 C 1.54939 * 111.16309 * 68.42055 * 16 14 13 19 19 O 1.43648 * 105.13936 * 154.38090 * 18 16 14 20 20 C 1.43242 * 109.96820 * 335.56442 * 19 18 16 21 21 H 1.09001 * 109.82515 * 121.31446 * 20 19 18 22 22 C 1.52998 * 109.83055 * 242.20205 * 20 19 18 23 23 N 1.46900 * 109.46970 * 298.54437 * 22 20 19 24 24 C 1.54387 * 107.58896 * 1.71731 * 20 19 18 25 25 H 1.09002 * 109.46922 * 60.00078 * 1 2 3 26 26 H 1.08997 * 109.47414 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47280 * 300.00284 * 1 2 3 28 28 H 1.08994 * 109.47368 * 239.99744 * 2 1 3 29 29 H 1.09002 * 109.46922 * 119.99922 * 2 1 3 30 30 H 0.96998 * 120.00089 * 179.97438 * 8 7 5 31 31 H 0.97002 * 119.99904 * 95.00041 * 13 3 2 32 32 H 1.09006 * 110.31544 * 35.45821 * 18 16 14 33 33 H 1.09003 * 110.30709 * 273.29190 * 18 16 14 34 34 H 1.08993 * 109.47194 * 58.54769 * 22 20 19 35 35 H 1.09004 * 109.46839 * 178.54897 * 22 20 19 36 36 H 1.00900 * 110.99806 * 56.05186 * 23 22 20 37 37 H 1.00903 * 110.99654 * 180.02562 * 23 22 20 38 38 H 1.08995 * 110.84684 * 139.54728 * 24 20 19 39 39 H 1.09001 * 110.84097 * 263.16649 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6067 1.9810 -0.8429 5 6 3.5421 1.4442 -0.1214 6 1 4.1493 1.8090 0.6939 7 6 4.1412 0.9800 -1.2731 8 7 3.4097 0.7113 -2.3325 9 14 5.9919 0.7326 -1.3289 10 1 6.3289 -0.6067 -0.7833 11 1 6.4618 0.8273 -2.7344 12 1 6.6562 1.7808 -0.5132 13 7 1.6504 2.0983 1.2507 14 6 0.4329 2.6652 1.3636 15 8 -0.3401 2.6328 0.4295 16 6 0.0319 3.3393 2.6504 17 1 0.1240 2.6557 3.4943 18 6 0.8550 4.6308 2.8854 19 8 0.0264 5.4573 3.7183 20 6 -1.3500 5.0993 3.5480 21 1 -1.7749 4.7983 4.5056 22 6 -2.1300 6.2892 2.9852 23 7 -2.0637 7.4102 3.9322 24 6 -1.4056 3.9192 2.5541 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8312 0.3851 -3.1429 31 1 2.2687 2.1244 1.9977 32 1 1.0553 5.1297 1.9371 33 1 1.7895 4.3964 3.3952 34 1 -1.6942 6.5916 2.0330 35 1 -3.1707 6.0025 2.8338 36 1 -1.1064 7.6527 4.1390 37 1 -2.5721 8.2089 3.5832 38 1 -2.1436 3.1814 2.8689 39 1 -1.6147 4.2723 1.5443 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713810116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:41 Heat of formation + Delta-G solvation = -122.478018 kcal Electronic energy + Delta-G solvation = -19792.442933 eV Core-core repulsion = 16733.228437 eV Total energy + Delta-G solvation = -3059.214496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.39713 -39.80202 -36.92319 -35.37820 -34.30807 -33.52761 -32.56279 -30.41941 -28.85477 -25.57986 -25.29724 -23.97921 -21.96079 -21.72570 -20.93174 -18.96581 -18.16601 -17.54095 -17.23106 -16.80500 -16.38041 -16.05371 -15.86615 -15.41483 -15.13568 -14.73112 -14.61657 -13.95841 -13.84205 -13.63740 -13.40299 -13.25841 -12.97955 -12.85688 -12.62026 -12.27128 -12.19820 -12.16689 -12.01565 -11.89875 -11.62003 -11.09750 -10.67515 -10.58291 -10.50730 -9.65168 -9.63614 -8.19861 -6.32711 1.44586 1.45548 1.54733 1.78409 2.32442 2.50779 2.88975 3.12175 3.34232 3.55918 3.87445 3.92755 4.12571 4.15361 4.30422 4.36037 4.46089 4.53138 4.60688 4.67992 4.73394 4.77044 4.88113 4.98027 5.05431 5.20228 5.24110 5.41131 5.52673 5.61530 5.74651 5.91627 5.92771 6.07296 6.19296 6.57769 6.76484 6.97771 7.33668 7.57114 8.88720 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.031777 B = 0.004816 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.925057 B = 5812.979882 C = 6331.899547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 C 0.276 3.724 4 H 0.002 0.998 5 C -0.550 4.550 6 H 0.073 0.927 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.965 3.035 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.263 1.263 13 N -0.702 5.702 14 C 0.510 3.490 15 O -0.583 6.583 16 C -0.138 4.138 17 H 0.135 0.865 18 C 0.069 3.931 19 O -0.382 6.382 20 C 0.084 3.916 21 H 0.100 0.900 22 C 0.052 3.948 23 N -0.850 5.850 24 C -0.127 4.127 25 H 0.024 0.976 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.264 0.736 31 H 0.404 0.596 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.019 0.981 35 H 0.092 0.908 36 H 0.347 0.653 37 H 0.349 0.651 38 H 0.101 0.899 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.555 6.832 12.908 16.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.152 4.152 3 C 0.172 3.828 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.091 0.909 7 C -0.182 4.182 8 N -0.555 5.555 9 Si 0.790 3.210 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.188 1.188 13 N -0.350 5.350 14 C 0.297 3.703 15 O -0.464 6.464 16 C -0.159 4.159 17 H 0.153 0.847 18 C -0.008 4.008 19 O -0.302 6.302 20 C 0.027 3.973 21 H 0.118 0.882 22 C -0.079 4.079 23 N -0.381 5.381 24 C -0.165 4.165 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.239 0.761 32 H 0.064 0.936 33 H 0.132 0.868 34 H 0.037 0.963 35 H 0.110 0.890 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.119 0.881 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.383 6.419 12.684 16.018 hybrid contribution 1.557 0.082 -1.437 2.120 sum -5.826 6.501 11.247 14.237 Atomic orbital electron populations 1.21684 0.96631 0.99375 1.00493 1.21705 0.94137 0.99036 1.00360 1.18376 0.93679 0.89082 0.81660 0.97985 1.21556 0.91426 1.43666 1.02127 0.90880 1.25747 1.03025 0.94829 0.94615 1.70131 1.37752 1.44817 1.02772 0.85466 0.79432 0.79049 0.77056 1.19614 1.21554 1.18763 1.46265 1.15477 1.55744 1.17564 1.20636 0.81814 0.78456 0.89440 1.90667 1.52580 1.61072 1.42088 1.23020 0.97569 0.98843 0.96487 0.84684 1.23269 0.94714 0.87801 0.94970 1.88392 1.16963 1.59882 1.64930 1.22905 0.82147 0.93142 0.99114 0.88175 1.22165 1.00624 0.92104 0.93050 1.58707 1.20437 1.11102 1.47830 1.22989 0.95593 0.97575 1.00392 0.95640 0.93372 0.93278 0.93190 0.93190 0.92680 0.76112 0.93611 0.86824 0.96256 0.89016 0.84033 0.83794 0.88074 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.51 71.98 0.61 -4.75 16 2 C -0.11 -5.35 5.50 30.59 0.17 -5.18 16 3 C 0.28 13.67 2.11 44.24 0.09 13.76 16 4 H 0.00 0.13 7.52 -2.38 -0.02 0.12 16 5 C -0.55 -28.35 8.66 25.60 0.22 -28.12 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.98 5.16 84.65 0.44 1.41 16 8 N -0.92 -52.56 12.16 21.44 0.26 -52.30 16 9 Si 0.97 41.47 29.55 68.60 2.03 43.49 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 13 N -0.70 -27.15 5.02 -446.08 -2.24 -29.38 16 14 C 0.51 18.66 5.72 87.66 0.50 19.16 16 15 O -0.58 -26.27 12.85 -3.05 -0.04 -26.31 16 16 C -0.14 -3.53 3.48 -10.08 -0.04 -3.57 16 17 H 0.14 2.74 8.14 -2.39 -0.02 2.72 16 18 C 0.07 1.69 7.25 72.65 0.53 2.22 16 19 O -0.38 -9.22 10.42 -148.98 -1.55 -10.77 16 20 C 0.08 1.80 3.80 31.06 0.12 1.92 16 21 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 22 C 0.05 1.04 6.38 86.30 0.55 1.59 16 23 N -0.85 -15.51 9.62 -186.72 -1.80 -17.31 16 24 C -0.13 -3.05 5.70 31.86 0.18 -2.87 16 25 H 0.02 1.19 7.84 -2.39 -0.02 1.18 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 27 H 0.05 2.00 5.65 -2.39 -0.01 1.99 16 28 H 0.05 2.65 6.80 -2.39 -0.02 2.63 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.40 13.00 8.53 -92.71 -0.79 12.21 16 32 H 0.05 1.30 8.02 -2.38 -0.02 1.28 16 33 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.35 6.51 8.45 -89.69 -0.76 5.76 16 37 H 0.35 5.02 9.08 -89.69 -0.81 4.21 16 38 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.07 2.05 7.06 -2.39 -0.02 2.04 16 Total: -1.00 -64.70 313.34 -1.26 -65.96 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -1.29 Total: 31.04 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 3.38 Total: -4.42 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -3.78 Total: -98.99 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -1.59 Total: -37.08 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -64.70 -1.26 -65.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713810116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.522 kcal (2) G-P(sol) polarization free energy of solvation -64.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds