Wall clock time and date at job start Mon Mar 30 2020 04:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00150 * 2 1 4 4 H 1.48494 * 109.46896 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47121 * 300.00130 * 3 2 1 6 6 H 1.48504 * 109.46835 * 60.00177 * 3 2 1 7 7 C 1.37881 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47180 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47030 * 179.97438 * 10 9 7 12 12 N 1.46492 * 109.47032 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00128 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99669 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00301 * 179.97438 * 13 12 11 16 16 H 1.08999 * 110.75803 * 297.98688 * 15 13 12 17 17 C 1.54385 * 110.84637 * 61.46048 * 15 13 12 18 18 O 1.43230 * 107.59245 * 139.54741 * 17 15 13 19 19 C 1.43646 * 109.97175 * 1.70875 * 18 17 15 20 20 H 1.08999 * 110.30803 * 94.58600 * 19 18 17 21 21 C 1.53002 * 110.31344 * 216.65864 * 19 18 17 22 22 N 1.46906 * 109.47053 * 298.54810 * 21 19 18 23 23 C 1.54943 * 105.13433 * 335.57278 * 19 18 17 24 24 H 0.97000 * 120.00145 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47465 * 59.99421 * 9 7 2 26 26 H 1.09005 * 109.46829 * 299.99953 * 9 7 2 27 27 H 1.08998 * 109.47106 * 59.99965 * 10 9 7 28 28 H 1.08995 * 109.46894 * 299.99447 * 10 9 7 29 29 H 1.09004 * 109.47000 * 59.99538 * 11 10 9 30 30 H 1.09005 * 109.47258 * 300.00268 * 11 10 9 31 31 H 0.97000 * 120.00357 * 0.02562 * 12 11 10 32 32 H 1.09000 * 109.83181 * 20.02693 * 17 15 13 33 33 H 1.09002 * 109.83059 * 259.06235 * 17 15 13 34 34 H 1.08992 * 109.47056 * 178.54481 * 21 19 18 35 35 H 1.09004 * 109.47006 * 58.54597 * 21 19 18 36 36 H 1.00897 * 110.99706 * 179.97438 * 22 21 19 37 37 H 1.00899 * 110.99484 * 303.95475 * 22 21 19 38 38 H 1.09004 * 111.12165 * 154.36353 * 23 19 18 39 39 H 1.08998 * 111.12910 * 278.52268 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0006 13 6 1.9830 -7.3713 0.0015 14 8 0.7906 -7.5929 0.0024 15 6 2.9622 -8.5167 0.0003 16 1 3.5754 -8.4998 -0.9007 17 6 3.8450 -8.4862 1.2664 18 8 3.9979 -9.8360 1.7203 19 6 3.3193 -10.7337 0.8275 20 1 4.0136 -11.1239 0.0834 21 6 2.6822 -11.8824 1.6121 22 7 3.7309 -12.6429 2.3049 23 6 2.2239 -9.8753 0.1462 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.8532 -5.0451 -0.8886 30 1 0.8538 -5.0446 0.8914 31 1 3.3859 -5.9234 0.0002 32 1 3.3622 -7.8884 2.0395 33 1 4.8209 -8.0639 1.0267 34 1 2.1499 -12.5402 0.9252 35 1 1.9826 -11.4785 2.3440 36 1 3.3352 -13.4076 2.8310 37 1 4.4275 -12.9735 1.6541 38 1 1.9550 -10.2829 -0.8283 39 1 1.3462 -9.7788 0.7853 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713817306.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:47 Heat of formation + Delta-G solvation = -104.783926 kcal Electronic energy + Delta-G solvation = -18625.000158 eV Core-core repulsion = 15566.552936 eV Total energy + Delta-G solvation = -3058.447222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48850 -38.72465 -35.48935 -34.86271 -33.38217 -32.52348 -31.20827 -29.69006 -26.78549 -24.80360 -23.86342 -22.31070 -21.45290 -20.73719 -19.64906 -17.50643 -17.19553 -16.46031 -15.93500 -15.66382 -15.42243 -15.25176 -14.71664 -14.44765 -14.26911 -14.14245 -13.47845 -13.41474 -12.45072 -12.34649 -12.24624 -11.89657 -11.78314 -11.60223 -11.37020 -11.21301 -10.93804 -10.77163 -10.59050 -10.01521 -9.90559 -9.70506 -9.40111 -9.12745 -8.98959 -8.86102 -8.39656 -6.03975 -4.07135 2.62825 3.19526 3.28726 3.36361 3.39875 3.53879 4.02201 4.17607 4.42611 4.56166 4.60733 4.75829 4.84239 4.96366 5.03288 5.25885 5.31977 5.34131 5.43001 5.61939 5.63756 5.69736 5.73133 5.90341 6.11665 6.41178 6.55604 6.64730 6.77805 6.87383 6.96472 7.08168 7.60703 7.61254 7.73000 7.94625 8.27175 8.36044 8.99756 9.57303 11.07363 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.057265 B = 0.002925 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.837395 B = 9570.885289 C = 9845.211240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.723 5.723 13 C 0.519 3.481 14 O -0.539 6.539 15 C -0.147 4.147 16 H 0.111 0.889 17 C 0.060 3.940 18 O -0.357 6.357 19 C 0.082 3.918 20 H 0.069 0.931 21 C 0.062 3.938 22 N -0.843 5.843 23 C -0.129 4.129 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.399 0.601 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.341 0.659 37 H 0.339 0.661 38 H 0.087 0.913 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.129 -22.901 0.066 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.374 5.374 13 C 0.303 3.697 14 O -0.417 6.417 15 C -0.169 4.169 16 H 0.129 0.871 17 C -0.017 4.017 18 O -0.276 6.276 19 C 0.024 3.976 20 H 0.087 0.913 21 C -0.069 4.069 22 N -0.373 5.373 23 C -0.168 4.168 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.233 0.767 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.106 0.894 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.355 -22.298 0.643 23.489 hybrid contribution 0.447 0.444 -0.906 1.103 sum 7.802 -21.854 -0.263 23.207 Atomic orbital electron populations 1.69973 1.06074 1.26613 1.50616 1.25038 0.94864 0.99352 0.95262 0.86520 0.80045 0.83719 0.77616 1.19747 1.20995 1.20976 1.21236 0.93028 0.90908 1.50856 0.92578 1.19037 0.93853 0.90886 0.97664 1.21891 0.99775 0.93286 1.00926 1.21682 0.91881 0.85107 1.02068 1.46237 1.10914 1.05880 1.74352 1.20131 0.89220 0.83792 0.76512 1.90708 1.16664 1.84704 1.49588 1.22918 0.97667 0.95084 1.01236 0.87113 1.23104 0.98847 0.85504 0.94291 1.88558 1.74682 1.14625 1.49755 1.23020 0.92692 0.90856 0.91054 0.91296 1.21952 0.93714 0.94058 0.97143 1.58550 1.16340 1.30964 1.31403 1.23158 0.98813 0.92151 1.02665 0.92958 0.96294 0.96251 0.92652 0.92702 0.91707 0.91667 0.76726 0.90703 0.90505 0.94168 0.90085 0.84623 0.84873 0.89422 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.12 1.98 5.67 -4.05 -0.02 1.96 16 12 N -0.72 -9.87 5.50 -60.30 -0.33 -10.20 16 13 C 0.52 7.25 7.02 -10.99 -0.08 7.17 16 14 O -0.54 -9.72 15.76 5.56 0.09 -9.63 16 15 C -0.15 -1.48 3.39 -89.82 -0.30 -1.78 16 16 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 17 C 0.06 0.60 7.34 37.88 0.28 0.88 16 18 O -0.36 -4.12 10.95 -35.23 -0.39 -4.51 16 19 C 0.08 0.73 3.65 -25.70 -0.09 0.64 16 20 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 21 C 0.06 0.50 6.51 -3.82 -0.02 0.47 16 22 N -0.84 -6.46 9.54 -10.37 -0.10 -6.56 16 23 C -0.13 -1.24 5.65 -24.48 -0.14 -1.38 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.40 4.30 8.47 -40.82 -0.35 3.96 16 32 H 0.07 0.83 7.81 -51.93 -0.41 0.42 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.34 1.97 9.08 -39.29 -0.36 1.61 16 37 H 0.34 2.10 8.99 -39.29 -0.35 1.75 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.09 7.38 -51.93 -0.38 0.71 16 LS Contribution 325.43 15.07 4.90 4.90 Total: -1.00 -33.36 325.43 -7.64 -41.00 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.46 Total: 1.98 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -1.07 Total: -7.36 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.31 Total: -42.78 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.30 Total: -14.14 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.36 -7.64 -41.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713817306.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.784 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds