Wall clock time and date at job start Mon Mar 30 2020 04:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00150 * 2 1 4 4 H 1.48494 * 109.46896 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47121 * 300.00130 * 3 2 1 6 6 H 1.48504 * 109.46835 * 60.00177 * 3 2 1 7 7 C 1.37881 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47180 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47030 * 179.97438 * 10 9 7 12 12 N 1.46492 * 109.47032 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00128 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99669 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00301 * 179.97438 * 13 12 11 16 16 H 1.08999 * 110.75803 * 297.98688 * 15 13 12 17 17 C 1.54385 * 110.84637 * 61.46048 * 15 13 12 18 18 O 1.43230 * 107.59245 * 139.54741 * 17 15 13 19 19 C 1.43646 * 109.97175 * 1.70875 * 18 17 15 20 20 H 1.08999 * 110.30803 * 94.58600 * 19 18 17 21 21 C 1.53002 * 110.31344 * 216.65864 * 19 18 17 22 22 N 1.46906 * 109.47053 * 298.54810 * 21 19 18 23 23 C 1.54943 * 105.13433 * 335.57278 * 19 18 17 24 24 H 0.97000 * 120.00145 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47465 * 59.99421 * 9 7 2 26 26 H 1.09005 * 109.46829 * 299.99953 * 9 7 2 27 27 H 1.08998 * 109.47106 * 59.99965 * 10 9 7 28 28 H 1.08995 * 109.46894 * 299.99447 * 10 9 7 29 29 H 1.09004 * 109.47000 * 59.99538 * 11 10 9 30 30 H 1.09005 * 109.47258 * 300.00268 * 11 10 9 31 31 H 0.97000 * 120.00357 * 0.02562 * 12 11 10 32 32 H 1.09000 * 109.83181 * 20.02693 * 17 15 13 33 33 H 1.09002 * 109.83059 * 259.06235 * 17 15 13 34 34 H 1.08992 * 109.47056 * 178.54481 * 21 19 18 35 35 H 1.09004 * 109.47006 * 58.54597 * 21 19 18 36 36 H 1.00897 * 110.99706 * 179.97438 * 22 21 19 37 37 H 1.00899 * 110.99484 * 303.95475 * 22 21 19 38 38 H 1.09004 * 111.12165 * 154.36353 * 23 19 18 39 39 H 1.08998 * 111.12910 * 278.52268 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0006 13 6 1.9830 -7.3713 0.0015 14 8 0.7906 -7.5929 0.0024 15 6 2.9622 -8.5167 0.0003 16 1 3.5754 -8.4998 -0.9007 17 6 3.8450 -8.4862 1.2664 18 8 3.9979 -9.8360 1.7203 19 6 3.3193 -10.7337 0.8275 20 1 4.0136 -11.1239 0.0834 21 6 2.6822 -11.8824 1.6121 22 7 3.7309 -12.6429 2.3049 23 6 2.2239 -9.8753 0.1462 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.8532 -5.0451 -0.8886 30 1 0.8538 -5.0446 0.8914 31 1 3.3859 -5.9234 0.0002 32 1 3.3622 -7.8884 2.0395 33 1 4.8209 -8.0639 1.0267 34 1 2.1499 -12.5402 0.9252 35 1 1.9826 -11.4785 2.3440 36 1 3.3352 -13.4076 2.8310 37 1 4.4275 -12.9735 1.6541 38 1 1.9550 -10.2829 -0.8283 39 1 1.3462 -9.7788 0.7853 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713817306.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:46 Heat of formation + Delta-G solvation = -131.304582 kcal Electronic energy + Delta-G solvation = -18626.150180 eV Core-core repulsion = 15566.552936 eV Total energy + Delta-G solvation = -3059.597244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.45408 -39.72771 -37.00222 -35.51202 -35.20070 -33.58344 -32.78199 -30.51693 -28.53203 -25.50247 -25.41580 -23.60152 -22.33898 -22.14789 -20.85345 -18.59911 -18.33475 -18.00263 -17.08418 -16.61619 -16.51316 -16.40353 -16.23239 -15.55624 -15.33535 -15.01813 -14.66132 -14.32880 -14.21549 -13.78137 -13.54751 -13.16458 -12.98982 -12.78405 -12.56466 -12.41054 -12.34397 -12.16830 -11.93560 -11.69119 -11.59537 -11.23986 -10.91492 -10.57027 -10.46542 -10.14665 -9.54237 -8.20453 -6.31876 1.41533 1.41817 1.51682 1.54987 2.10090 2.41908 2.78325 3.13543 3.22977 3.52491 3.76736 3.87745 4.06936 4.10333 4.18267 4.19864 4.26595 4.35566 4.53655 4.57803 4.64885 4.73927 4.88628 4.92904 4.95200 4.97933 5.15853 5.17321 5.40342 5.51787 5.69584 5.83471 5.99691 6.21261 6.29009 6.51241 6.63548 6.86060 7.18008 7.37944 8.91914 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.057265 B = 0.002925 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.837395 B = 9570.885289 C = 9845.211240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.102 4.102 11 C 0.128 3.872 12 N -0.712 5.712 13 C 0.517 3.483 14 O -0.585 6.585 15 C -0.136 4.136 16 H 0.145 0.855 17 C 0.061 3.939 18 O -0.380 6.380 19 C 0.083 3.917 20 H 0.091 0.909 21 C 0.062 3.938 22 N -0.856 5.856 23 C -0.129 4.129 24 H 0.263 0.737 25 H -0.008 1.008 26 H -0.009 1.009 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.417 0.583 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.350 0.650 37 H 0.348 0.652 38 H 0.104 0.896 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.749 -23.537 -0.566 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.004 3.996 12 N -0.364 5.364 13 C 0.304 3.696 14 O -0.465 6.465 15 C -0.157 4.157 16 H 0.163 0.837 17 C -0.016 4.016 18 O -0.299 6.299 19 C 0.026 3.974 20 H 0.109 0.891 21 C -0.069 4.069 22 N -0.387 5.387 23 C -0.168 4.168 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.009 0.991 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.254 0.746 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.123 0.877 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.025 -22.957 0.013 25.050 hybrid contribution -0.412 0.592 -0.689 0.998 sum 9.614 -22.365 -0.677 24.353 Atomic orbital electron populations 1.70116 1.07967 1.27742 1.51799 1.26038 0.95754 1.03618 0.94818 0.85358 0.79226 0.78604 0.77603 1.18134 1.20569 1.20644 1.21712 0.93769 0.91971 1.50268 0.91474 1.18956 0.94482 0.93072 0.95024 1.21594 0.98406 0.91706 1.02231 1.21246 0.92022 0.85655 1.00648 1.46009 1.11268 1.05034 1.74046 1.20843 0.89316 0.84429 0.74992 1.90696 1.18954 1.85334 1.51494 1.22930 0.96868 0.93054 1.02822 0.83723 1.23149 0.99897 0.85041 0.93537 1.88537 1.75050 1.15369 1.50985 1.23157 0.92612 0.90480 0.91159 0.89097 1.21926 0.93637 0.94282 0.97093 1.58521 1.16663 1.31610 1.31943 1.23153 0.98168 0.92336 1.03134 0.92817 0.98960 0.99073 0.91344 0.91159 0.93110 0.93414 0.74624 0.92439 0.87883 0.92191 0.91959 0.83615 0.83872 0.87749 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.17 13.29 21.45 0.28 -56.88 16 2 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 3 Si 0.97 43.67 29.54 68.60 2.03 45.69 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.54 -29.92 9.11 25.60 0.23 -29.68 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.16 4.97 29.85 0.15 1.30 16 10 C -0.10 -3.82 5.27 30.60 0.16 -3.66 16 11 C 0.13 4.43 5.67 86.38 0.49 4.92 16 12 N -0.71 -18.46 5.50 -463.07 -2.55 -21.00 16 13 C 0.52 13.97 7.02 87.66 0.62 14.58 16 14 O -0.58 -21.33 15.76 -3.04 -0.05 -21.38 16 15 C -0.14 -2.40 3.39 -10.28 -0.03 -2.44 16 16 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 17 C 0.06 1.09 7.34 72.45 0.53 1.62 16 18 O -0.38 -8.07 10.95 -148.98 -1.63 -9.70 16 19 C 0.08 1.32 3.65 31.26 0.11 1.43 16 20 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 21 C 0.06 0.91 6.51 86.30 0.56 1.47 16 22 N -0.86 -11.79 9.54 -186.71 -1.78 -13.58 16 23 C -0.13 -2.29 5.65 32.05 0.18 -2.10 16 24 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 25 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 27 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.42 7.87 8.47 -92.71 -0.78 7.08 16 32 H 0.06 1.22 7.81 -2.39 -0.02 1.20 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.35 3.60 9.08 -89.70 -0.81 2.79 16 37 H 0.35 3.61 8.99 -89.69 -0.81 2.80 16 38 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.07 1.61 7.38 -2.39 -0.02 1.59 16 Total: -1.00 -73.34 325.43 -1.58 -74.92 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -1.35 Total: 14.30 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 3.46 Total: -12.37 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -4.04 Total: -91.46 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -1.68 Total: -31.08 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -73.34 -1.58 -74.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713817306.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.385 kcal (2) G-P(sol) polarization free energy of solvation -73.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds