Wall clock time and date at job start Mon Mar 30 2020 04:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99872 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00071 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99944 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.87128 * 56.01027 * 15 13 12 17 17 O 1.43742 * 109.87744 * 177.17226 * 15 13 12 18 18 C 1.44378 * 106.97806 * 92.91017 * 17 15 13 19 19 C 1.54998 * 103.49057 * 40.06057 * 18 17 15 20 20 C 1.54100 * 109.87729 * 294.99927 * 15 13 12 21 21 H 1.08997 * 110.49065 * 1.28348 * 20 15 13 22 22 C 1.53006 * 110.48451 * 123.92928 * 20 15 13 23 23 N 1.46897 * 109.46983 * 185.00008 * 22 20 15 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 32 32 H 1.09000 * 110.61707 * 281.55615 * 18 17 15 33 33 H 1.09000 * 110.61802 * 158.56133 * 18 17 15 34 34 H 1.08996 * 110.90739 * 204.78145 * 19 18 17 35 35 H 1.08995 * 110.90583 * 81.17526 * 19 18 17 36 36 H 1.08992 * 109.47351 * 304.99939 * 22 20 15 37 37 H 1.09005 * 109.46941 * 65.00289 * 22 20 15 38 38 H 1.00898 * 111.00179 * 56.04377 * 23 22 20 39 39 H 1.00899 * 111.00045 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9827 -7.3713 -0.0019 14 8 0.7904 -7.5929 -0.0010 15 6 2.9620 -8.5168 -0.0020 16 1 3.6384 -8.4261 0.8480 17 8 2.2534 -9.7656 0.0646 18 6 2.0548 -10.2106 -1.2944 19 6 3.3952 -9.8599 -1.9893 20 6 3.7680 -8.5170 -1.3154 21 1 3.4711 -7.6786 -1.9454 22 6 5.2689 -8.4633 -1.0226 23 7 6.0101 -8.3438 -2.2852 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.3858 -5.9235 -0.0021 32 1 1.2292 -9.6709 -1.7583 33 1 1.8768 -11.2856 -1.3242 34 1 3.2549 -9.7308 -3.0624 35 1 4.1494 -10.6200 -1.7856 36 1 5.4853 -7.6016 -0.3912 37 1 5.5716 -9.3756 -0.5085 38 1 5.7011 -7.5401 -2.8112 39 1 7.0045 -8.3068 -2.1186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715308946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:15 Heat of formation + Delta-G solvation = -104.179403 kcal Electronic energy + Delta-G solvation = -19078.610023 eV Core-core repulsion = 16020.189015 eV Total energy + Delta-G solvation = -3058.421008 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65036 -38.35466 -35.71027 -35.21227 -33.36017 -31.69375 -31.27016 -29.82885 -26.89150 -25.19014 -23.37475 -22.57485 -21.07848 -20.74936 -19.94578 -17.55553 -16.89719 -16.56297 -16.09243 -15.63129 -15.27122 -15.15801 -14.86481 -14.49370 -14.19878 -14.02930 -13.78512 -13.06616 -12.50164 -12.31734 -11.92197 -11.87907 -11.78726 -11.57349 -11.38503 -11.16316 -10.93263 -10.77783 -10.63109 -10.50547 -9.91390 -9.66683 -9.24867 -9.10108 -9.08278 -8.83162 -8.40434 -6.04915 -4.08366 2.65105 3.18849 3.28136 3.34792 3.37346 3.71454 4.00141 4.33399 4.38215 4.41634 4.70495 4.79280 4.91459 5.01660 5.13113 5.24441 5.30862 5.35898 5.54964 5.57429 5.66291 5.72540 5.73237 5.88937 6.11090 6.42656 6.54106 6.55044 6.68577 6.78247 6.95486 7.01756 7.59670 7.63818 7.72042 7.93445 8.31913 8.35822 8.98214 9.56005 11.06368 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.030294 B = 0.003708 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.054449 B = 7548.903979 C = 8236.148901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.116 3.884 12 N -0.724 5.724 13 C 0.488 3.512 14 O -0.528 6.528 15 C 0.065 3.935 16 H 0.118 0.882 17 O -0.345 6.345 18 C 0.039 3.961 19 C -0.134 4.134 20 C -0.114 4.114 21 H 0.089 0.911 22 C 0.070 3.930 23 N -0.850 5.850 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.396 0.604 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.033 0.967 37 H 0.079 0.921 38 H 0.343 0.657 39 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.605 -18.542 -3.325 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.007 4.007 12 N -0.377 5.377 13 C 0.272 3.728 14 O -0.404 6.404 15 C 0.003 3.997 16 H 0.135 0.865 17 O -0.262 6.262 18 C -0.037 4.037 19 C -0.172 4.172 20 C -0.133 4.133 21 H 0.108 0.892 22 C -0.061 4.061 23 N -0.380 5.380 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.229 0.771 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.156 0.844 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.162 -19.414 -3.297 22.160 hybrid contribution 1.233 2.208 0.222 2.538 sum 11.395 -17.207 -3.076 20.866 Atomic orbital electron populations 1.69968 1.06072 1.26731 1.50438 1.25032 0.94857 0.99317 0.95234 0.86580 0.79795 0.83421 0.78102 1.20645 1.21167 1.19899 1.21189 0.92952 0.90936 1.51094 0.92682 1.19033 0.93854 0.90842 0.97697 1.21883 0.99760 0.93356 1.00782 1.21663 0.91895 0.85047 1.02062 1.46216 1.10669 1.05866 1.74942 1.21183 0.90239 0.84383 0.76966 1.90711 1.16600 1.84613 1.48459 1.22712 0.92058 0.85050 0.99899 0.86486 1.88959 1.76988 1.34009 1.26214 1.23720 0.97080 1.00635 0.82261 1.23086 0.97345 0.96066 1.00701 1.22554 0.95137 1.00290 0.95332 0.89248 1.21850 0.91842 1.01110 0.91278 1.58659 1.09020 1.49759 1.20515 0.92886 0.96277 0.96231 0.92742 0.92806 0.91699 0.91773 0.77069 0.91596 0.88615 0.89859 0.89898 0.94856 0.90280 0.84410 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 11 C 0.12 2.03 5.67 -4.04 -0.02 2.00 16 12 N -0.72 -10.10 5.52 -60.29 -0.33 -10.44 16 13 C 0.49 7.36 6.89 -10.98 -0.08 7.29 16 14 O -0.53 -10.42 16.49 -14.02 -0.23 -10.65 16 15 C 0.07 0.74 3.56 -27.31 -0.10 0.65 16 16 H 0.12 1.08 7.69 -51.93 -0.40 0.68 16 17 O -0.34 -4.61 10.75 -54.81 -0.59 -5.19 16 18 C 0.04 0.42 7.62 38.21 0.29 0.71 16 19 C -0.13 -1.15 6.60 -24.72 -0.16 -1.32 16 20 C -0.11 -1.00 2.82 -89.09 -0.25 -1.25 16 21 H 0.09 0.85 7.68 -51.93 -0.40 0.45 16 22 C 0.07 0.48 5.90 -3.82 -0.02 0.46 16 23 N -0.85 -5.42 9.51 -10.37 -0.10 -5.52 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.40 4.30 8.47 -40.82 -0.35 3.95 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.66 7.77 -51.93 -0.40 0.26 16 36 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.08 0.53 7.99 -51.93 -0.41 0.12 16 38 H 0.34 2.08 8.99 -39.29 -0.35 1.73 16 39 H 0.34 1.70 9.08 -39.29 -0.36 1.34 16 LS Contribution 325.41 15.07 4.90 4.90 Total: -1.00 -33.43 325.41 -8.10 -41.53 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.44 Total: 1.78 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.03 Total: -6.72 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.31 Total: -41.91 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.82 Total: -15.85 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.43 -8.10 -41.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715308946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.647 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds