Wall clock time and date at job start Mon Mar 30 2020 04:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99872 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00071 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99944 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.87128 * 56.01027 * 15 13 12 17 17 O 1.43742 * 109.87744 * 177.17226 * 15 13 12 18 18 C 1.44378 * 106.97806 * 92.91017 * 17 15 13 19 19 C 1.54998 * 103.49057 * 40.06057 * 18 17 15 20 20 C 1.54100 * 109.87729 * 294.99927 * 15 13 12 21 21 H 1.08997 * 110.49065 * 1.28348 * 20 15 13 22 22 C 1.53006 * 110.48451 * 123.92928 * 20 15 13 23 23 N 1.46897 * 109.46983 * 185.00008 * 22 20 15 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 32 32 H 1.09000 * 110.61707 * 281.55615 * 18 17 15 33 33 H 1.09000 * 110.61802 * 158.56133 * 18 17 15 34 34 H 1.08996 * 110.90739 * 204.78145 * 19 18 17 35 35 H 1.08995 * 110.90583 * 81.17526 * 19 18 17 36 36 H 1.08992 * 109.47351 * 304.99939 * 22 20 15 37 37 H 1.09005 * 109.46941 * 65.00289 * 22 20 15 38 38 H 1.00898 * 111.00179 * 56.04377 * 23 22 20 39 39 H 1.00899 * 111.00045 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9827 -7.3713 -0.0019 14 8 0.7904 -7.5929 -0.0010 15 6 2.9620 -8.5168 -0.0020 16 1 3.6384 -8.4261 0.8480 17 8 2.2534 -9.7656 0.0646 18 6 2.0548 -10.2106 -1.2944 19 6 3.3952 -9.8599 -1.9893 20 6 3.7680 -8.5170 -1.3154 21 1 3.4711 -7.6786 -1.9454 22 6 5.2689 -8.4633 -1.0226 23 7 6.0101 -8.3438 -2.2852 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.3858 -5.9235 -0.0021 32 1 1.2292 -9.6709 -1.7583 33 1 1.8768 -11.2856 -1.3242 34 1 3.2549 -9.7308 -3.0624 35 1 4.1494 -10.6200 -1.7856 36 1 5.4853 -7.6016 -0.3912 37 1 5.5716 -9.3756 -0.5085 38 1 5.7011 -7.5401 -2.8112 39 1 7.0045 -8.3068 -2.1186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715308946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:14 Heat of formation + Delta-G solvation = -129.875960 kcal Electronic energy + Delta-G solvation = -19079.724310 eV Core-core repulsion = 16020.189015 eV Total energy + Delta-G solvation = -3059.535294 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.66926 -39.48538 -37.01690 -36.13370 -35.18869 -33.20587 -32.18921 -30.87305 -28.54778 -26.24152 -24.75356 -23.66553 -22.36543 -21.79684 -21.23672 -18.70059 -18.47568 -17.69160 -17.20605 -16.79486 -16.56938 -16.40639 -15.94617 -15.57314 -15.27821 -15.16964 -14.82217 -14.29538 -13.99364 -13.77053 -13.56100 -13.21777 -12.76936 -12.59324 -12.56041 -12.42383 -12.38941 -12.15740 -11.93509 -11.70036 -11.58592 -11.40923 -11.23288 -10.56573 -10.39158 -10.17390 -9.54323 -8.20468 -6.32329 1.41488 1.42858 1.47283 1.53789 2.02203 2.41655 2.85680 3.13523 3.31716 3.54775 3.66888 3.92019 4.09811 4.13826 4.15345 4.17659 4.33083 4.43364 4.51186 4.56864 4.72032 4.82455 4.89871 4.90705 4.95228 5.07325 5.14258 5.19504 5.37511 5.50290 5.68176 5.69594 5.82562 6.20339 6.25307 6.49790 6.63168 6.85351 7.16766 7.37636 8.91741 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.030294 B = 0.003708 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.054449 B = 7548.903979 C = 8236.148901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.128 3.872 12 N -0.708 5.708 13 C 0.485 3.515 14 O -0.582 6.582 15 C 0.070 3.930 16 H 0.146 0.854 17 O -0.369 6.369 18 C 0.032 3.968 19 C -0.125 4.125 20 C -0.106 4.106 21 H 0.082 0.918 22 C 0.075 3.925 23 N -0.855 5.855 24 H 0.263 0.737 25 H -0.009 1.009 26 H -0.010 1.010 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.416 0.584 32 H 0.043 0.957 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.345 0.655 39 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.731 -18.792 -3.520 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.137 4.137 11 C 0.004 3.996 12 N -0.361 5.361 13 C 0.271 3.729 14 O -0.461 6.461 15 C 0.008 3.992 16 H 0.163 0.837 17 O -0.286 6.286 18 C -0.044 4.044 19 C -0.162 4.162 20 C -0.126 4.126 21 H 0.101 0.899 22 C -0.056 4.056 23 N -0.387 5.387 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.009 0.991 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.252 0.748 32 H 0.061 0.939 33 H 0.133 0.867 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.158 0.842 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 13.355 -19.676 -3.497 24.036 hybrid contribution 0.204 2.244 0.272 2.270 sum 13.559 -17.432 -3.225 22.318 Atomic orbital electron populations 1.70120 1.08021 1.27810 1.51681 1.26040 0.95727 1.03623 0.94750 0.85404 0.78697 0.78201 0.78476 1.19773 1.21158 1.18297 1.21675 0.93784 0.91909 1.50481 0.91372 1.18957 0.94495 0.93113 0.94999 1.21585 0.98379 0.91503 1.02275 1.21248 0.92067 0.85712 1.00528 1.45940 1.11130 1.04794 1.74268 1.22014 0.90245 0.85243 0.75355 1.90690 1.19158 1.85365 1.50886 1.22856 0.91119 0.82743 1.02459 0.83719 1.88938 1.77405 1.34509 1.27771 1.23860 0.97615 1.01448 0.81437 1.23054 0.96223 0.96203 1.00752 1.22520 0.96309 1.00137 0.93624 0.89947 1.21799 0.90049 1.02048 0.91729 1.58631 1.09719 1.50014 1.20309 0.92824 0.99040 0.99118 0.91237 0.91064 0.93522 0.93363 0.74751 0.93883 0.86745 0.89257 0.88633 0.93544 0.89695 0.84211 0.83219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.08 13.29 21.45 0.28 -56.79 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 3 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.54 -29.79 9.11 25.60 0.23 -29.55 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.73 5.27 30.59 0.16 -3.57 16 11 C 0.13 4.53 5.67 86.38 0.49 5.02 16 12 N -0.71 -18.91 5.52 -463.05 -2.55 -21.47 16 13 C 0.48 14.41 6.89 87.66 0.60 15.02 16 14 O -0.58 -23.61 16.49 15.69 0.26 -23.35 16 15 C 0.07 1.48 3.56 30.22 0.11 1.59 16 16 H 0.15 2.23 7.69 -2.39 -0.02 2.21 16 17 O -0.37 -9.53 10.75 -130.26 -1.40 -10.93 16 18 C 0.03 0.66 7.62 72.67 0.55 1.22 16 19 C -0.12 -1.89 6.60 31.90 0.21 -1.68 16 20 C -0.11 -1.63 2.82 -9.80 -0.03 -1.66 16 21 H 0.08 1.40 7.68 -2.39 -0.02 1.39 16 22 C 0.07 0.77 5.90 86.31 0.51 1.28 16 23 N -0.86 -8.32 9.51 -186.72 -1.78 -10.10 16 24 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 25 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.42 7.89 8.47 -92.71 -0.79 7.10 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 1.24 7.77 -2.39 -0.02 1.22 16 36 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.08 0.83 7.99 -2.38 -0.02 0.81 16 38 H 0.35 3.22 8.99 -89.70 -0.81 2.42 16 39 H 0.35 2.40 9.08 -89.69 -0.81 1.59 16 Total: -1.00 -73.90 325.41 -1.06 -74.95 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -1.35 Total: 13.19 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 3.45 Total: -10.80 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -4.05 Total: -88.36 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -1.14 Total: -34.28 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -73.90 -1.06 -74.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715308946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.924 kcal (2) G-P(sol) polarization free energy of solvation -73.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds