Wall clock time and date at job start Mon Mar 30 2020 04:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99719 * 2 1 4 4 H 1.48498 * 109.47195 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47016 * 299.99847 * 3 2 1 6 6 H 1.48499 * 109.47072 * 60.00027 * 3 2 1 7 7 C 1.37871 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99929 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46916 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99640 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00191 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99618 * 179.97438 * 11 10 9 14 14 O 1.42908 * 109.46708 * 180.02562 * 13 11 10 15 15 C 1.42895 * 113.99699 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47043 * 179.97438 * 15 14 13 17 17 H 1.09001 * 110.01484 * 306.38780 * 16 15 14 18 18 C 1.53871 * 110.07586 * 67.80680 * 16 15 14 19 19 C 1.54269 * 106.59813 * 119.30662 * 18 16 15 20 20 C 1.54885 * 104.19677 * 23.61322 * 19 18 16 21 21 H 1.09002 * 110.75709 * 80.37016 * 20 19 18 22 22 N 1.46899 * 110.91184 * 203.66946 * 20 19 18 23 23 C 1.54271 * 110.03332 * 184.99875 * 16 15 14 24 24 H 0.97002 * 120.00189 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47138 * 59.99811 * 9 7 2 26 26 H 1.08997 * 109.47073 * 299.99952 * 9 7 2 27 27 H 0.97001 * 120.00140 * 0.02562 * 10 9 7 28 28 H 1.08996 * 109.46825 * 60.00393 * 13 11 10 29 29 H 1.09002 * 109.47453 * 299.99934 * 13 11 10 30 30 H 1.09001 * 109.47734 * 59.99796 * 15 14 13 31 31 H 1.09001 * 109.47421 * 299.99679 * 15 14 13 32 32 H 1.09000 * 110.03307 * 238.59414 * 18 16 15 33 33 H 1.09002 * 110.03084 * 0.02709 * 18 16 15 34 34 H 1.09002 * 110.48538 * 264.93327 * 19 18 16 35 35 H 1.08996 * 110.48433 * 142.29362 * 19 18 16 36 36 H 1.00894 * 111.00013 * 295.95041 * 22 20 19 37 37 H 1.00900 * 111.00433 * 59.91254 * 22 20 19 38 38 H 1.09002 * 110.48367 * 98.37848 * 23 16 15 39 39 H 1.09002 * 110.59675 * 335.78962 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6125 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7333 -6.0287 0.0005 14 8 2.0188 -7.2663 0.0006 15 6 2.8588 -8.4223 0.0006 16 6 1.9916 -9.6828 0.0014 17 1 1.2799 -9.6455 0.8262 18 6 1.2420 -9.8090 -1.3364 19 6 1.7027 -11.1349 -1.9763 20 6 2.1904 -11.9860 -0.7776 21 1 1.3473 -12.4457 -0.2619 22 7 3.1500 -13.0080 -1.2162 23 6 2.8817 -10.9365 0.1278 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 3.1568 -3.4353 0.0009 28 1 3.3606 -5.9708 0.8900 29 1 3.3593 -5.9711 -0.8900 30 1 3.4881 -8.4142 0.8906 31 1 3.4880 -8.4143 -0.8894 32 1 0.1664 -9.8329 -1.1609 33 1 1.4961 -8.9723 -1.9871 34 1 2.5197 -10.9574 -2.6757 35 1 0.8692 -11.6258 -2.4787 36 1 2.7132 -13.6704 -1.8395 37 1 3.9579 -12.5843 -1.6473 38 1 2.9086 -11.2827 1.1610 39 1 3.8900 -10.7286 -0.2304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718179691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:59 Heat of formation + Delta-G solvation = -106.122738 kcal Electronic energy + Delta-G solvation = -18506.928671 eV Core-core repulsion = 15448.423394 eV Total energy + Delta-G solvation = -3058.505277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.38810 -38.71781 -36.98013 -34.16696 -33.27023 -32.34695 -29.88223 -28.70052 -27.39494 -26.07776 -24.07101 -22.47314 -20.74937 -20.06149 -19.67454 -17.27842 -16.83772 -16.63669 -16.06598 -15.79284 -15.24121 -15.17274 -14.86563 -14.24526 -14.02126 -13.63267 -13.43150 -12.78339 -12.60562 -12.51994 -12.01430 -11.81824 -11.62293 -11.58158 -11.32466 -11.01505 -10.96974 -10.94625 -10.88473 -10.52174 -10.32523 -9.62113 -9.39396 -9.02212 -8.99792 -8.75443 -7.90361 -6.17710 -4.24879 3.22715 3.26658 3.31062 3.33702 3.34720 4.08190 4.28453 4.33320 4.40246 4.57353 4.77146 4.96953 5.08409 5.18107 5.18347 5.23073 5.25887 5.34935 5.38628 5.43070 5.45386 5.51423 5.56960 5.76986 5.86487 5.95356 6.13093 6.22491 6.76813 7.05403 7.10670 7.31684 7.42597 7.50745 7.66282 7.95438 8.59688 8.77261 9.08442 9.41764 10.92551 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.069091 B = 0.002834 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.165118 B = 9878.859643 C =10046.361612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.712 5.712 11 C 0.498 3.502 12 O -0.536 6.536 13 C 0.044 3.956 14 O -0.360 6.360 15 C 0.067 3.933 16 C -0.090 4.090 17 H 0.084 0.916 18 C -0.113 4.113 19 C -0.161 4.161 20 C 0.085 3.915 21 H 0.089 0.911 22 N -0.844 5.844 23 C -0.108 4.108 24 H 0.266 0.734 25 H 0.027 0.973 26 H 0.028 0.972 27 H 0.391 0.609 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.341 0.659 37 H 0.340 0.660 38 H 0.073 0.927 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.950 -21.367 -2.353 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.363 5.363 11 C 0.281 3.719 12 O -0.413 6.413 13 C -0.036 4.036 14 O -0.278 6.278 15 C -0.010 4.010 16 C -0.109 4.109 17 H 0.103 0.897 18 C -0.151 4.151 19 C -0.201 4.201 20 C -0.027 4.027 21 H 0.107 0.893 22 N -0.372 5.372 23 C -0.146 4.146 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.223 0.777 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.091 0.909 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.752 -21.604 -1.571 23.006 hybrid contribution 1.010 1.528 -1.005 2.089 sum 8.762 -20.075 -2.576 22.055 Atomic orbital electron populations 1.69987 1.06116 1.27231 1.48891 1.24964 0.94929 0.99493 0.94705 0.86347 0.79787 0.82916 0.77765 1.19643 1.20785 1.20780 1.21253 0.93305 0.90377 1.53196 0.91801 1.19129 0.88258 0.81737 0.97867 1.46378 1.11207 1.05687 1.72989 1.20103 0.89387 0.84027 0.78341 1.90685 1.16625 1.84634 1.49334 1.22294 0.94470 0.85022 1.01820 1.88034 1.32240 1.12156 1.95327 1.22634 0.92918 0.85581 0.99912 1.21723 0.97505 0.92400 0.99286 0.89743 1.22061 1.00395 0.96885 0.95799 1.23228 1.01029 0.97332 0.98477 1.22469 0.94538 0.90863 0.94803 0.89298 1.58835 1.10454 1.19113 1.48752 1.22341 0.98621 0.93353 1.00334 0.92462 0.95454 0.95427 0.77700 0.90883 0.90966 0.93327 0.93400 0.91366 0.91114 0.91897 0.91748 0.84652 0.84767 0.90860 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.78 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.54 -14.74 9.28 -34.44 -0.32 -15.06 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 10 N -0.71 -15.11 5.55 -61.47 -0.34 -15.45 16 11 C 0.50 10.35 7.91 -10.98 -0.09 10.27 16 12 O -0.54 -13.78 16.50 -14.35 -0.24 -14.02 16 13 C 0.04 0.66 6.42 36.01 0.23 0.89 16 14 O -0.36 -5.71 9.69 -55.14 -0.53 -6.24 16 15 C 0.07 0.74 4.94 37.16 0.18 0.93 16 16 C -0.09 -0.91 3.18 -89.50 -0.28 -1.20 16 17 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 18 C -0.11 -1.18 6.32 -25.61 -0.16 -1.34 16 19 C -0.16 -1.28 6.51 -25.07 -0.16 -1.45 16 20 C 0.09 0.65 4.04 -65.72 -0.27 0.38 16 21 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 22 N -0.84 -5.63 9.39 -2.98 -0.03 -5.66 16 23 C -0.11 -0.88 6.01 -25.07 -0.15 -1.03 16 24 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.39 6.90 8.32 -40.82 -0.34 6.56 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.83 7.64 -51.93 -0.40 0.44 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.34 1.82 9.08 -39.29 -0.36 1.47 16 37 H 0.34 1.96 8.90 -39.29 -0.35 1.61 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.52 7.76 -51.93 -0.40 0.12 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -33.39 326.08 -8.11 -41.50 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.45 Total: 3.90 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.14 Total: 0.72 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.37 Total: -46.56 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.77 Total: -20.26 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.39 -8.11 -41.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718179691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.627 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds