Wall clock time and date at job start Mon Mar 30 2020 04:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46717 * 2 1 4 4 H 1.08999 * 109.46815 * 179.25457 * 3 2 1 5 5 C 1.50701 * 109.47526 * 299.25717 * 3 2 1 6 6 H 1.07993 * 120.00173 * 120.00335 * 5 3 2 7 7 C 1.37878 * 119.99417 * 299.99963 * 5 3 2 8 8 N 1.31520 * 119.99495 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00442 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47148 * 89.99876 * 9 7 5 11 11 H 1.48497 * 109.47129 * 209.99745 * 9 7 5 12 12 H 1.48506 * 109.47157 * 329.99687 * 9 7 5 13 13 N 1.46898 * 109.47220 * 59.25902 * 3 2 1 14 14 C 1.46897 * 111.00342 * 85.93636 * 13 3 2 15 15 C 1.53000 * 109.47267 * 175.54231 * 14 13 3 16 16 H 1.08996 * 110.46635 * 303.82092 * 15 14 13 17 17 C 1.54093 * 110.64071 * 181.10873 * 15 14 13 18 18 N 1.47093 * 103.77973 * 241.10015 * 17 15 14 19 19 C 1.46500 * 125.55837 * 180.23132 * 18 17 15 20 20 C 1.52993 * 109.47096 * 270.16924 * 19 18 17 21 21 C 1.34006 * 108.87885 * 0.35823 * 18 17 15 22 22 O 1.21513 * 123.06850 * 179.87086 * 21 18 17 23 23 O 1.33770 * 113.85427 * 359.60663 * 21 18 17 24 24 H 1.08999 * 109.47241 * 55.55853 * 1 2 3 25 25 H 1.09003 * 109.46742 * 175.55367 * 1 2 3 26 26 H 1.08995 * 109.47258 * 295.55674 * 1 2 3 27 27 H 1.08995 * 109.47545 * 240.00452 * 2 1 3 28 28 H 1.09004 * 109.46877 * 119.99849 * 2 1 3 29 29 H 0.96993 * 119.99650 * 180.02562 * 8 7 5 30 30 H 1.00900 * 111.00226 * 209.89525 * 13 3 2 31 31 H 1.09002 * 109.47202 * 55.54353 * 14 13 3 32 32 H 1.09003 * 109.47168 * 295.54232 * 14 13 3 33 33 H 1.09004 * 110.56662 * 359.88740 * 17 15 14 34 34 H 1.08999 * 110.56428 * 122.59035 * 17 15 14 35 35 H 1.08997 * 109.47589 * 30.17631 * 19 18 17 36 36 H 1.09002 * 109.46686 * 150.17376 * 19 18 17 37 37 H 1.09002 * 109.47510 * 300.00297 * 20 19 18 38 38 H 1.09002 * 109.46985 * 60.00634 * 20 19 18 39 39 H 1.09001 * 109.47190 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1298 1.4426 0.0134 5 6 1.5527 2.1477 -1.2395 6 1 0.9307 3.0261 -1.1518 7 6 1.9012 1.6712 -2.4856 8 7 1.4755 2.2863 -3.5674 9 14 2.9765 0.1514 -2.6373 10 1 2.1181 -1.0593 -2.6883 11 1 3.7839 0.2384 -3.8805 12 1 3.8825 0.0668 -1.4636 13 7 1.5357 2.1402 1.1904 14 6 2.4173 1.9175 2.3441 15 6 1.9227 2.7462 3.5313 16 1 1.8614 3.8004 3.2611 17 6 2.8458 2.5538 4.7501 18 7 1.9593 1.9793 5.7737 19 6 2.3560 1.6119 7.1353 20 6 2.8324 0.1581 7.1529 21 6 0.7304 1.8442 5.2567 22 8 -0.2063 1.3900 5.8834 23 8 0.6279 2.2602 3.9895 24 1 -0.3634 0.5812 -0.8475 25 1 -0.3633 -1.0246 -0.0797 26 1 -0.3633 0.4433 0.9271 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7204 1.9509 -4.4439 30 1 1.4188 3.1259 1.0094 31 1 3.4331 2.2190 2.0886 32 1 2.4079 0.8604 2.6098 33 1 3.6568 1.8658 4.5114 34 1 3.2439 3.5121 5.0839 35 1 3.1648 2.2633 7.4664 36 1 1.5029 1.7229 7.8046 37 1 2.0236 -0.4933 6.8218 38 1 3.6855 0.0472 6.4836 39 1 3.1271 -0.1154 8.1661 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846980001.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:00 Heat of formation + Delta-G solvation = -66.198947 kcal Electronic energy + Delta-G solvation = -19819.806743 eV Core-core repulsion = 16763.032691 eV Total energy + Delta-G solvation = -3056.774052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.52797 -37.49656 -36.40032 -35.97578 -33.07881 -31.79721 -31.27747 -29.29070 -26.82151 -24.62640 -24.01384 -23.12054 -22.19865 -20.65497 -19.39871 -17.37423 -17.07883 -16.86442 -16.26314 -15.50642 -15.27224 -14.41873 -14.22120 -14.05050 -13.80649 -13.68236 -13.52830 -13.06068 -12.72929 -12.52174 -12.40785 -12.26116 -11.89457 -11.80307 -11.40407 -11.08591 -10.73548 -10.58796 -10.49878 -10.37729 -10.17270 -9.97917 -9.33799 -9.08395 -8.98761 -8.60687 -7.56862 -6.13267 -4.12558 2.43102 2.81264 3.24914 3.32692 3.35125 3.49285 4.01002 4.35172 4.42457 4.51606 4.89335 4.94197 5.00838 5.08384 5.17254 5.26755 5.30283 5.33640 5.44573 5.73327 5.83414 5.91914 5.95877 6.15821 6.22708 6.33709 6.47622 6.68612 6.91872 7.12776 7.19862 7.42332 7.50943 7.57965 7.82494 8.08070 8.24363 8.54901 8.91169 9.48756 10.99497 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.034701 B = 0.004826 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.709928 B = 5800.850174 C = 5873.641788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C 0.187 3.813 4 H 0.001 0.999 5 C -0.515 4.515 6 H 0.080 0.920 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.270 1.270 13 N -0.668 5.668 14 C 0.051 3.949 15 C 0.074 3.926 16 H 0.114 0.886 17 C 0.071 3.929 18 N -0.636 5.636 19 C 0.144 3.856 20 C -0.173 4.173 21 C 0.640 3.360 22 O -0.530 6.530 23 O -0.300 6.300 24 H 0.067 0.933 25 H 0.020 0.980 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.028 0.972 29 H 0.265 0.735 30 H 0.341 0.659 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.269 0.028 18.501 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.150 4.150 3 C 0.078 3.922 4 H 0.018 0.982 5 C -0.553 4.553 6 H 0.098 0.902 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.226 1.226 12 H -0.195 1.195 13 N -0.300 5.300 14 C -0.079 4.079 15 C 0.018 3.982 16 H 0.132 0.868 17 C -0.053 4.053 18 N -0.385 5.385 19 C 0.023 3.977 20 C -0.232 4.232 21 C 0.394 3.606 22 O -0.416 6.416 23 O -0.209 6.209 24 H 0.086 0.914 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.136 -0.702 18.633 19.630 hybrid contribution 1.587 -0.356 -0.517 1.707 sum 7.723 -1.058 18.115 19.721 Atomic orbital electron populations 1.21474 0.95352 0.98389 1.03119 1.21743 0.97630 0.98004 0.97641 1.19604 0.92710 0.91426 0.88478 0.98160 1.21004 1.32588 1.13371 0.88351 0.90231 1.24887 0.95497 0.96700 0.95730 1.69885 1.45257 1.40428 0.97857 0.86862 0.80770 0.83897 0.76714 1.20349 1.22558 1.19517 1.60454 1.48232 1.16675 1.04627 1.22324 0.94950 0.99805 0.90871 1.23995 0.79513 1.00569 0.94118 0.86779 1.22838 0.94468 1.00493 0.87482 1.48158 1.09697 1.66461 1.14167 1.21220 1.00842 0.95921 0.79708 1.22208 1.01992 0.96653 1.02332 1.18707 0.83424 0.77436 0.81003 1.91004 1.40642 1.49370 1.60540 1.87481 1.32795 1.75184 1.25442 0.91359 0.96138 0.92423 0.94117 0.95277 0.92555 0.83994 0.93449 0.90765 0.89085 0.89107 0.90001 0.89575 0.91907 0.92305 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.52 37.16 0.35 -2.41 16 2 C -0.11 -2.49 5.29 -26.73 -0.14 -2.63 16 3 C 0.19 4.20 1.89 -68.87 -0.13 4.07 16 4 H 0.00 0.02 6.77 -51.93 -0.35 -0.33 16 5 C -0.52 -13.72 7.87 -34.44 -0.27 -13.99 16 6 H 0.08 2.30 7.85 -52.49 -0.41 1.89 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 9 Si 0.89 21.61 24.38 -169.99 -4.14 17.47 16 10 H -0.28 -6.69 6.86 56.52 0.39 -6.30 16 11 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 13 N -0.67 -12.68 5.61 -107.95 -0.61 -13.29 16 14 C 0.05 0.74 5.09 -3.83 -0.02 0.72 16 15 C 0.07 0.89 3.99 -26.16 -0.10 0.79 16 16 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 17 C 0.07 0.62 7.34 -3.15 -0.02 0.60 16 18 N -0.64 -7.15 2.96 -178.85 -0.53 -7.68 16 19 C 0.14 1.20 6.73 -4.05 -0.03 1.17 16 20 C -0.17 -1.38 10.24 37.15 0.38 -1.00 16 21 C 0.64 10.20 8.85 53.71 0.48 10.68 16 22 O -0.53 -10.29 17.54 -19.12 -0.34 -10.63 16 23 O -0.30 -4.93 10.78 -37.83 -0.41 -5.34 16 24 H 0.07 1.65 7.09 -51.93 -0.37 1.28 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 1.24 7.73 -51.93 -0.40 0.84 16 27 H 0.04 0.95 3.26 -51.93 -0.17 0.78 16 28 H 0.03 0.58 7.62 -51.93 -0.40 0.19 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.34 6.34 8.14 -39.29 -0.32 6.02 16 31 H 0.05 0.62 7.94 -51.93 -0.41 0.21 16 32 H 0.07 1.15 7.62 -51.93 -0.40 0.76 16 33 H 0.09 0.68 7.74 -51.93 -0.40 0.28 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.78 7.93 -51.93 -0.41 0.37 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 313.00 15.07 4.72 4.72 Total: -1.00 -32.94 313.00 -6.32 -39.26 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.18 Total: 1.40 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 0.39 Total: -0.03 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.36 Total: -46.86 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.74 Total: -15.96 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.14 Total: 17.47 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.94 -6.32 -39.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846980001.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.939 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds