Wall clock time and date at job start Mon Mar 30 2020 04:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99627 * 2 1 4 4 C 1.50695 * 109.47387 * 270.00423 * 3 2 1 5 5 H 1.07995 * 120.00035 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00198 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99731 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00182 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47149 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.46759 * 300.00126 * 8 6 4 11 11 H 1.48497 * 109.47148 * 60.00070 * 8 6 4 12 12 C 1.34775 * 120.00310 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99905 * 177.66441 * 12 2 1 14 14 C 1.50696 * 119.99772 * 357.65670 * 12 2 1 15 15 C 1.53000 * 109.88141 * 78.57842 * 14 12 2 16 16 C 1.54323 * 109.88850 * 199.77362 * 14 12 2 17 17 C 1.55145 * 103.01630 * 97.12422 * 16 14 12 18 18 H 1.09003 * 111.02356 * 277.54912 * 17 16 14 19 19 O 1.42897 * 110.98983 * 153.74753 * 17 16 14 20 20 C 1.54904 * 101.65363 * 35.65241 * 17 16 14 21 21 N 1.47443 * 109.89133 * 317.54186 * 14 12 2 22 22 C 1.46901 * 110.99876 * 117.33647 * 21 14 12 23 23 H 1.08995 * 109.47111 * 96.79661 * 1 2 3 24 24 H 1.09000 * 109.46414 * 216.79440 * 1 2 3 25 25 H 1.09002 * 109.47182 * 336.78912 * 1 2 3 26 26 H 1.08998 * 109.47115 * 150.00393 * 3 2 1 27 27 H 1.08999 * 109.46932 * 30.00838 * 3 2 1 28 28 H 0.96999 * 119.99943 * 0.02562 * 7 6 4 29 29 H 1.08998 * 109.47119 * 60.69161 * 15 14 12 30 30 H 1.08993 * 109.47216 * 180.70304 * 15 14 12 31 31 H 1.09006 * 109.46605 * 300.70046 * 15 14 12 32 32 H 1.08998 * 110.70607 * 215.50399 * 16 14 12 33 33 H 1.09002 * 110.70522 * 338.74726 * 16 14 12 34 34 H 0.96703 * 114.00193 * 186.27672 * 19 17 16 35 35 H 1.09004 * 110.37322 * 204.09851 * 20 17 16 36 36 H 1.09001 * 110.46392 * 81.81109 * 20 17 16 37 37 H 1.09001 * 109.47235 * 60.00211 * 22 21 14 38 38 H 1.09002 * 109.47437 * 180.02562 * 22 21 14 39 39 H 1.09001 * 109.47086 * 300.00042 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7039 -1.4207 5 1 2.0973 1.0964 -2.2416 6 6 3.1258 2.8782 -1.6727 7 7 3.5531 3.6183 -0.6730 8 14 3.4376 3.4173 -3.4338 9 1 4.1799 4.7035 -3.4338 10 1 4.2411 2.3826 -4.1332 11 1 2.1403 3.5940 -4.1345 12 6 2.1390 -1.1672 -0.0005 13 8 3.3510 -1.1675 -0.0433 14 6 1.3865 -2.4717 0.0523 15 6 0.8300 -2.8078 -1.3328 16 6 2.3239 -3.5994 0.5330 17 6 2.0061 -3.6958 2.0485 18 1 2.5553 -2.9414 2.6119 19 8 2.2832 -5.0058 2.5473 20 6 0.4847 -3.4047 2.0683 21 7 0.2836 -2.3756 1.0261 22 6 -1.0179 -2.5426 0.3657 23 1 -0.3633 -0.1216 -1.0204 24 1 -0.3632 -0.8230 0.6155 25 1 -0.3634 0.9445 0.4050 26 1 3.1499 1.1385 0.5138 27 1 1.6084 2.0283 0.5140 28 1 3.3921 3.3378 0.2415 29 1 1.6530 -2.9074 -2.0406 30 1 0.2768 -3.7457 -1.2843 31 1 0.1639 -2.0095 -1.6602 32 1 2.0885 -4.5371 0.0295 33 1 3.3673 -3.3270 0.3746 34 1 2.0111 -5.1430 3.4651 35 1 0.1844 -3.0211 3.0434 36 1 -0.0788 -4.3057 1.8258 37 1 -1.0593 -3.5206 -0.1138 38 1 -1.8138 -2.4669 1.1066 39 1 -1.1465 -1.7637 -0.3859 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900356141.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:28 Heat of formation + Delta-G solvation = -39.082126 kcal Electronic energy + Delta-G solvation = -20729.256316 eV Core-core repulsion = 17673.658138 eV Total energy + Delta-G solvation = -3055.598178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.82338 -37.92922 -36.41015 -34.96864 -32.75770 -31.60018 -30.97765 -27.35781 -26.60537 -25.65629 -24.68605 -23.15049 -21.35444 -20.90239 -18.26848 -17.44545 -16.95877 -16.71380 -15.88606 -15.33788 -14.59431 -14.50433 -14.33390 -14.21747 -13.67896 -13.41740 -13.11357 -12.60154 -12.45451 -12.22900 -11.99714 -11.80326 -11.71206 -11.50034 -11.34004 -11.15060 -10.98929 -10.66627 -10.65876 -10.35434 -10.11655 -10.06824 -9.27467 -9.01998 -8.33606 -8.24326 -7.44866 -6.33261 -4.04653 3.18882 3.44849 3.49553 3.66801 3.72236 3.93791 4.27799 4.45226 4.54415 4.57960 4.92663 5.04558 5.14185 5.18963 5.25633 5.29318 5.41811 5.43425 5.60019 5.67410 5.72331 5.81397 5.94247 5.98479 6.05986 6.20452 6.21272 6.42903 6.73183 6.82155 6.90474 7.19138 7.46349 7.54126 8.10703 8.41302 8.50693 8.82950 9.11224 9.65007 11.03715 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.032217 B = 0.005921 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.907269 B = 4727.654935 C = 4925.899928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.579 5.579 3 C 0.234 3.766 4 C -0.602 4.602 5 H 0.049 0.951 6 C 0.018 3.982 7 N -0.911 5.911 8 Si 1.071 2.929 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.527 3.473 13 O -0.546 6.546 14 C 0.081 3.919 15 C -0.160 4.160 16 C -0.116 4.116 17 C 0.092 3.908 18 H 0.076 0.924 19 O -0.560 6.560 20 C 0.008 3.992 21 N -0.510 5.510 22 C -0.005 4.005 23 H 0.035 0.965 24 H 0.124 0.876 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.020 0.980 28 H 0.267 0.733 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.378 0.622 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.821 -15.228 4.775 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.308 5.308 3 C 0.114 3.886 4 C -0.641 4.641 5 H 0.067 0.933 6 C -0.186 4.186 7 N -0.547 5.547 8 Si 0.899 3.101 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.215 1.215 12 C 0.312 3.688 13 O -0.423 6.423 14 C -0.011 4.011 15 C -0.218 4.218 16 C -0.155 4.155 17 C 0.033 3.967 18 H 0.094 0.906 19 O -0.364 6.364 20 C -0.120 4.120 21 N -0.237 5.237 22 C -0.152 4.152 23 H 0.053 0.947 24 H 0.141 0.859 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.225 0.775 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.261 -13.573 3.455 16.791 hybrid contribution -1.158 -1.719 1.028 2.314 sum -10.419 -15.292 4.483 19.040 Atomic orbital electron populations 1.23035 0.81385 1.04897 1.00845 1.47685 1.06414 1.06713 1.69979 1.19364 0.91949 0.79350 0.97936 1.22240 1.40472 1.09442 0.91976 0.93251 1.25806 0.93396 0.93358 1.06001 1.70798 1.44217 1.39612 1.00088 0.83514 0.76369 0.76264 0.73917 1.20660 1.21443 1.21518 1.19784 0.87290 0.84572 0.77191 1.90650 1.13826 1.86661 1.51190 1.21911 0.91482 0.94705 0.93049 1.22294 1.02237 1.02020 0.95210 1.22711 1.02328 0.97188 0.93248 1.22970 0.93558 0.84460 0.95725 0.90570 1.86508 1.85521 1.31618 1.32781 1.23820 0.97230 0.94134 0.96809 1.63720 1.02049 1.45826 1.12071 1.23001 0.90552 1.01374 1.00289 0.94688 0.85888 0.92455 0.95144 0.96217 0.92266 0.91054 0.91445 0.90790 0.90088 0.87832 0.77547 0.89778 0.92319 0.94462 0.90906 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 8.30 59.85 0.50 1.23 16 2 N -0.58 -13.00 2.86 -182.96 -0.52 -13.52 16 3 C 0.23 6.37 4.49 -5.20 -0.02 6.35 16 4 C -0.60 -17.84 9.39 -34.44 -0.32 -18.17 16 5 H 0.05 1.47 7.81 -52.49 -0.41 1.06 16 6 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 7 N -0.91 -28.45 13.65 55.43 0.76 -27.70 16 8 Si 1.07 26.19 29.90 -169.99 -5.08 21.11 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 12 C 0.53 11.49 6.66 -10.99 -0.07 11.41 16 13 O -0.55 -14.24 15.07 5.55 0.08 -14.15 16 14 C 0.08 1.28 0.75 -131.76 -0.10 1.18 16 15 C -0.16 -2.18 7.07 37.16 0.26 -1.92 16 16 C -0.12 -1.75 5.68 -24.90 -0.14 -1.89 16 17 C 0.09 1.19 4.42 -24.59 -0.11 1.08 16 18 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 19 O -0.56 -6.39 13.47 -35.23 -0.47 -6.86 16 20 C 0.01 0.09 6.46 -2.30 -0.01 0.07 16 21 N -0.51 -6.64 3.18 -225.25 -0.72 -7.35 16 22 C -0.01 -0.05 6.81 60.07 0.41 0.36 16 23 H 0.03 0.58 6.72 -51.93 -0.35 0.23 16 24 H 0.12 1.79 2.51 -62.84 -0.16 1.63 16 25 H 0.06 1.00 7.82 -51.93 -0.41 0.59 16 26 H 0.03 0.92 7.32 -51.93 -0.38 0.54 16 27 H 0.02 0.54 7.72 -51.93 -0.40 0.14 16 28 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.73 6.62 -51.93 -0.34 0.39 16 31 H 0.07 1.01 5.29 -51.93 -0.27 0.73 16 32 H 0.08 1.10 7.86 -51.93 -0.41 0.69 16 33 H 0.10 1.84 6.72 -51.93 -0.35 1.49 16 34 H 0.38 2.48 9.11 45.56 0.42 2.89 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.57 7.78 -51.93 -0.40 0.17 16 37 H 0.04 0.34 6.44 -51.93 -0.33 0.00 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.95 4.15 -51.93 -0.22 0.73 16 LS Contribution 298.59 15.07 4.50 4.50 Total: -1.00 -35.84 298.59 -5.97 -41.81 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -4.80 Total: 2.03 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 0.29 Total: 0.15 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.48 Total: -48.57 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.39 Total: -21.01 kcal Atomic # 14 Polarization: 26.19 SS G_CDS: -5.08 Total: 21.11 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.84 -5.97 -41.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900356141.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.724 kcal (2) G-P(sol) polarization free energy of solvation -35.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds