Wall clock time and date at job start Mon Mar 30 2020 04:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34642 * 117.00412 * 2 1 4 4 O 1.21514 * 119.99656 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00317 * 179.97438 * 3 2 1 6 6 C 1.46919 * 120.63056 * 180.02562 * 5 3 2 7 7 C 1.53192 * 108.77621 * 233.63351 * 6 5 3 8 8 C 1.53043 * 109.31176 * 305.36222 * 7 6 5 9 9 N 1.46899 * 109.45967 * 181.38658 * 8 7 6 10 10 C 1.46904 * 110.99846 * 155.00145 * 9 8 7 11 11 H 1.09005 * 109.47078 * 34.99919 * 10 9 8 12 12 C 1.53000 * 109.47015 * 275.00091 * 10 9 8 13 13 C 1.50696 * 109.46794 * 154.99634 * 10 9 8 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 10 9 15 15 C 1.37885 * 119.99717 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.53039 * 109.53537 * 61.36788 * 8 7 6 22 22 C 1.46919 * 120.63007 * 0.02562 * 5 3 2 23 23 H 1.09001 * 109.47201 * 299.99832 * 1 2 3 24 24 H 1.09009 * 109.46954 * 59.99936 * 1 2 3 25 25 H 1.08998 * 109.47241 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.58882 * 113.84521 * 6 5 3 27 27 H 1.09006 * 109.70352 * 353.48693 * 6 5 3 28 28 H 1.09001 * 109.49596 * 185.41280 * 7 6 5 29 29 H 1.08995 * 109.49666 * 65.31621 * 7 6 5 30 30 H 1.09001 * 109.45842 * 301.36521 * 8 7 6 31 31 H 1.00894 * 111.00040 * 31.04899 * 9 8 7 32 32 H 1.08998 * 109.46637 * 179.97438 * 12 10 9 33 33 H 1.08997 * 109.46749 * 299.99841 * 12 10 9 34 34 H 1.08996 * 109.47024 * 59.99984 * 12 10 9 35 35 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.50235 * 58.58434 * 21 8 7 37 37 H 1.09001 * 109.49999 * 178.68611 * 21 8 7 38 38 H 1.09005 * 109.58978 * 246.15714 * 22 5 3 39 39 H 1.09001 * 109.58744 * 6.44039 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0817 2.6100 -1.1664 8 6 6.0235 1.4076 -1.0705 9 7 6.9964 1.4590 -2.1699 10 6 8.2256 0.7349 -1.8193 11 1 7.9751 -0.1302 -1.2053 12 6 9.1585 1.6621 -1.0377 13 6 8.9139 0.2749 -3.0785 14 1 8.4818 0.4984 -4.0427 15 6 10.0960 -0.4306 -2.9996 16 7 10.6970 -0.8317 -4.0985 17 14 10.8437 -0.8166 -1.3319 18 1 11.7613 0.2814 -0.9347 19 1 9.7622 -0.9474 -0.3228 20 1 11.6023 -2.0907 -1.4126 21 6 5.2125 0.1133 -1.1675 22 6 4.2229 0.0468 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 4.6275 2.7028 0.9406 27 1 3.3578 3.3703 -0.1154 28 1 5.6622 3.5314 -1.1207 29 1 4.5354 2.5701 -2.1088 30 1 6.5510 1.4347 -0.1170 31 1 7.1999 2.4129 -2.4283 32 1 10.0702 1.1246 -0.7772 33 1 9.4089 2.5272 -1.6517 34 1 8.6605 1.9948 -0.1270 35 1 11.5288 -1.3276 -4.0430 36 1 4.6650 0.0968 -2.1099 37 1 5.8862 -0.7424 -1.1226 38 1 4.7706 -0.0278 0.9400 39 1 3.5756 -0.8225 -0.1151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068614158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:23 Heat of formation + Delta-G solvation = -96.035555 kcal Electronic energy + Delta-G solvation = -19775.347978 eV Core-core repulsion = 16717.280114 eV Total energy + Delta-G solvation = -3058.067864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.70631 -39.69789 -37.73495 -36.98768 -34.74008 -33.07485 -32.10638 -29.94306 -28.31927 -27.09249 -25.20447 -24.45729 -22.53577 -21.65782 -20.82479 -19.19924 -18.66872 -18.11710 -17.55922 -16.90284 -16.41578 -15.81861 -15.52210 -15.41529 -15.06981 -14.86581 -14.52160 -14.36708 -13.98236 -13.82758 -13.70741 -13.21033 -12.97667 -12.90901 -12.77454 -12.39897 -12.23597 -11.98853 -11.88929 -11.78803 -11.51691 -11.48556 -11.25324 -11.08409 -10.72257 -9.84869 -8.98361 -8.23739 -6.25983 1.16348 1.32490 1.37767 1.48188 1.67852 2.35163 2.90390 3.10988 3.40190 3.82520 3.87750 4.08866 4.27697 4.34429 4.35555 4.37814 4.50619 4.51826 4.55444 4.66124 4.69123 4.72252 4.78309 4.80678 4.86916 5.00078 5.03802 5.21021 5.29076 5.39139 5.44092 5.47320 5.72435 6.09856 6.23560 6.74809 6.80311 6.84115 7.16062 7.39416 8.93955 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.038446 B = 0.004554 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.121722 B = 6146.975937 C = 6357.200068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.375 6.375 3 C 0.645 3.355 4 O -0.608 6.608 5 N -0.590 5.590 6 C 0.132 3.868 7 C -0.125 4.125 8 C 0.086 3.914 9 N -0.683 5.683 10 C 0.189 3.811 11 H 0.032 0.968 12 C -0.177 4.177 13 C -0.502 4.502 14 H 0.032 0.968 15 C 0.006 3.994 16 N -0.954 5.954 17 Si 0.954 3.046 18 H -0.269 1.269 19 H -0.245 1.245 20 H -0.302 1.302 21 C -0.119 4.119 22 C 0.120 3.880 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.134 0.866 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.338 0.662 32 H 0.033 0.967 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.264 0.736 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.118 3.348 13.633 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.288 6.288 3 C 0.400 3.600 4 O -0.500 6.500 5 N -0.330 5.330 6 C 0.011 3.989 7 C -0.164 4.164 8 C -0.024 4.024 9 N -0.314 5.314 10 C 0.080 3.920 11 H 0.050 0.950 12 C -0.236 4.236 13 C -0.541 4.541 14 H 0.050 0.950 15 C -0.190 4.190 16 N -0.596 5.596 17 Si 0.781 3.219 18 H -0.195 1.195 19 H -0.169 1.169 20 H -0.230 1.230 21 C -0.158 4.158 22 C -0.002 4.002 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.152 0.848 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.156 0.844 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.536 2.994 13.225 21.385 hybrid contribution 1.077 0.268 0.465 1.204 sum -15.459 3.262 13.691 20.906 Atomic orbital electron populations 1.23484 0.72911 1.05539 1.02498 1.86253 1.25715 1.30084 1.86732 1.18224 0.83553 0.82214 0.76014 1.90942 1.65000 1.35973 1.58104 1.47105 1.01602 1.09577 1.74707 1.21709 0.94821 0.83047 0.99327 1.22049 0.97173 0.98459 0.98720 1.21533 0.92571 0.95179 0.93151 1.60448 1.12575 1.19459 1.38874 1.19412 0.86752 0.92587 0.93274 0.95004 1.22727 1.00041 1.00718 1.00134 1.21316 1.05913 1.33494 0.93367 0.94986 1.25842 0.97452 0.95549 1.00157 1.70063 1.19023 1.40488 1.29979 0.85794 0.79113 0.76433 0.80574 1.19524 1.16894 1.23014 1.21887 0.97392 0.98345 0.98211 1.21834 0.93293 0.86024 0.99085 0.91812 0.92355 0.84752 0.88844 0.89014 0.88668 0.92077 0.93293 0.84389 0.94796 0.92760 0.91824 0.92739 0.92649 0.91449 0.89304 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.77 10.56 113.37 1.20 1.97 16 2 O -0.37 -8.53 9.20 -55.52 -0.51 -9.05 16 3 C 0.65 17.34 8.43 129.79 1.09 18.43 16 4 O -0.61 -19.35 15.55 19.80 0.31 -19.04 16 5 N -0.59 -14.06 2.97 -949.17 -2.82 -16.88 16 6 C 0.13 2.79 6.43 86.36 0.56 3.35 16 7 C -0.13 -2.90 5.36 30.67 0.16 -2.73 16 8 C 0.09 2.42 2.27 44.94 0.10 2.52 16 9 N -0.68 -25.33 6.04 -473.16 -2.86 -28.19 16 10 C 0.19 8.26 1.97 44.17 0.09 8.35 16 11 H 0.03 1.42 6.16 -2.38 -0.01 1.40 16 12 C -0.18 -6.79 8.63 71.98 0.62 -6.17 16 13 C -0.50 -28.26 9.42 25.60 0.24 -28.02 16 14 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 15 C 0.01 0.36 5.45 84.66 0.46 0.82 16 16 N -0.95 -59.79 13.96 21.45 0.30 -59.50 16 17 Si 0.95 43.89 24.37 68.60 1.67 45.57 16 18 H -0.27 -11.79 6.87 99.48 0.68 -11.10 16 19 H -0.25 -10.21 6.53 99.48 0.65 -9.56 16 20 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 21 C -0.12 -3.35 5.57 30.69 0.17 -3.17 16 22 C 0.12 2.62 6.45 86.38 0.56 3.18 16 23 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.09 2.05 7.01 -2.38 -0.02 2.04 16 28 H 0.09 1.86 8.10 -2.39 -0.02 1.84 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.32 7.11 -2.39 -0.02 1.30 16 31 H 0.34 11.77 8.07 -89.70 -0.72 11.05 16 32 H 0.03 1.37 3.27 -2.39 -0.01 1.36 16 33 H 0.05 2.05 8.13 -2.39 -0.02 2.03 16 34 H 0.06 1.96 7.42 -2.39 -0.02 1.94 16 35 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 2.09 7.41 -2.39 -0.02 2.07 16 38 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.10 2.03 6.93 -2.39 -0.02 2.02 16 Total: -1.00 -70.81 306.10 1.58 -69.23 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.24 Total: 19.33 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 5.25 Total: -1.47 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -5.38 Total: -104.56 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.20 Total: -28.09 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.67 Total: 45.57 kcal Total: -70.81 1.58 -69.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.808 kcal (2) G-P(sol) polarization free energy of solvation -70.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds