Wall clock time and date at job start Mon Mar 30 2020 04:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46932 * 2 1 4 4 N 1.46901 * 109.47104 * 240.00424 * 2 1 3 5 5 C 1.46894 * 111.00044 * 113.50214 * 4 2 1 6 6 C 1.52996 * 110.01967 * 299.97739 * 5 4 2 7 7 O 1.42901 * 109.47124 * 301.63878 * 6 5 4 8 8 C 1.53879 * 110.03400 * 178.53638 * 5 4 2 9 9 C 1.54271 * 106.59982 * 240.71722 * 8 5 4 10 10 C 1.54892 * 104.19578 * 23.60469 * 9 8 5 11 11 C 1.54271 * 110.03593 * 61.36912 * 5 4 2 12 12 C 1.50699 * 109.47056 * 120.00114 * 2 1 3 13 13 O 1.21292 * 119.99840 * 120.00620 * 12 2 1 14 14 N 1.34775 * 119.99722 * 299.99967 * 12 2 1 15 15 C 1.37104 * 119.99577 * 180.02562 * 14 12 2 16 16 H 1.07997 * 120.00033 * 0.02562 * 15 14 12 17 17 C 1.38951 * 119.99901 * 179.97438 * 15 14 12 18 18 N 1.31412 * 119.99867 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00211 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46847 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47041 * 120.00025 * 19 17 15 22 22 H 1.48495 * 109.47183 * 240.00308 * 19 17 15 23 23 H 1.09003 * 109.47141 * 57.06833 * 1 2 3 24 24 H 1.09003 * 109.46821 * 177.06334 * 1 2 3 25 25 H 1.08993 * 109.47421 * 297.06924 * 1 2 3 26 26 H 1.00891 * 111.00250 * 349.54127 * 4 2 1 27 27 H 1.08997 * 109.47329 * 61.63039 * 6 5 4 28 28 H 1.08998 * 109.47757 * 181.63422 * 6 5 4 29 29 H 0.96693 * 114.00459 * 179.97438 * 7 6 5 30 30 H 1.09003 * 110.02804 * 0.02562 * 8 5 4 31 31 H 1.08997 * 110.03150 * 121.42839 * 8 5 4 32 32 H 1.09004 * 110.47977 * 264.92533 * 9 8 5 33 33 H 1.08995 * 110.48669 * 142.28909 * 9 8 5 34 34 H 1.08997 * 110.75086 * 203.74542 * 10 9 8 35 35 H 1.08999 * 110.74844 * 80.37486 * 10 9 8 36 36 H 1.09000 * 110.48625 * 214.35043 * 11 5 4 37 37 H 1.08999 * 110.48524 * 337.00001 * 11 5 4 38 38 H 0.96999 * 120.00341 * 0.02562 * 14 12 2 39 39 H 0.96996 * 120.00189 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.7108 0.2398 -2.1002 6 6 1.7538 1.3495 -2.5401 7 8 0.6208 0.7711 -3.1910 8 6 3.2457 -0.5145 -3.3301 9 6 4.7781 -0.3364 -3.3243 10 6 5.1204 -0.0404 -1.8430 11 6 3.9368 0.8500 -1.3899 12 6 2.0323 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7067 -0.2499 2.4545 15 6 2.1641 -0.8960 3.5739 16 1 2.7857 -1.7736 3.4748 17 6 1.8289 -0.4210 4.8360 18 7 1.0730 0.6472 4.9565 19 14 2.4515 -1.3016 6.3612 20 1 3.2765 -2.4683 5.9570 21 1 3.2770 -0.3684 7.1692 22 1 1.2965 -1.7678 7.1698 23 1 -0.3633 0.5587 -0.8626 24 1 -0.3633 -1.0264 -0.0527 25 1 -0.3634 0.4676 0.9150 26 1 1.2669 -1.1653 -1.6767 27 1 1.4232 1.9116 -1.6667 28 1 2.2667 2.0192 -3.2303 29 1 -0.0297 1.4179 -3.4970 30 1 2.9921 -1.5722 -3.2588 31 1 2.8239 -0.0899 -4.2411 32 1 5.0670 0.5023 -3.9576 33 1 5.2697 -1.2516 -3.6540 34 1 6.0631 0.5012 -1.7653 35 1 5.1544 -0.9625 -1.2627 36 1 4.0898 1.8804 -1.7109 37 1 3.8146 0.8005 -0.3079 38 1 1.1487 0.5385 2.5435 39 1 0.8386 0.9786 5.8375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309466607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:15 Heat of formation + Delta-G solvation = -93.798770 kcal Electronic energy + Delta-G solvation = -20258.705477 eV Core-core repulsion = 17200.734607 eV Total energy + Delta-G solvation = -3057.970870 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.69697 -37.82710 -36.09416 -34.41710 -33.65155 -31.20607 -30.04006 -28.62028 -27.37917 -25.14227 -24.16273 -22.89060 -20.53273 -19.03876 -18.59869 -17.73477 -17.28302 -16.58202 -15.70778 -14.93990 -14.62364 -14.42149 -14.30523 -14.15347 -13.49902 -13.35567 -12.84993 -12.58352 -12.55960 -11.88654 -11.65568 -11.48118 -11.22664 -11.09632 -10.99190 -10.90601 -10.81626 -10.65516 -10.51395 -10.30919 -10.28122 -10.12550 -9.98827 -9.39703 -8.40880 -7.83554 -7.65449 -6.32101 -3.71961 3.22036 3.31613 3.39337 4.00331 4.06457 4.24053 4.52157 4.72431 4.78948 5.10483 5.23992 5.26958 5.29884 5.35134 5.41808 5.60836 5.62877 5.66570 5.74856 5.86855 5.92525 6.00828 6.04960 6.12958 6.18568 6.24458 6.35926 6.44612 6.47122 6.57833 6.65876 7.46021 7.53165 7.64318 7.87708 8.19432 8.75686 9.30559 9.68860 10.23086 10.86273 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.029663 B = 0.005546 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.717800 B = 5047.620340 C = 5585.717811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.073 3.927 3 H 0.075 0.925 4 N -0.640 5.640 5 C 0.119 3.881 6 C 0.046 3.954 7 O -0.567 6.567 8 C -0.105 4.105 9 C -0.122 4.122 10 C -0.115 4.115 11 C -0.114 4.114 12 C 0.452 3.548 13 O -0.568 6.568 14 N -0.573 5.573 15 C -0.293 4.293 16 H 0.102 0.898 17 C 0.019 3.981 18 N -0.907 5.907 19 Si 0.926 3.074 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.347 0.653 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.375 0.625 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.389 0.611 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.493 4.863 -15.216 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.040 4.040 3 H 0.093 0.907 4 N -0.271 5.271 5 C 0.027 3.973 6 C -0.034 4.034 7 O -0.372 6.372 8 C -0.143 4.143 9 C -0.160 4.160 10 C -0.153 4.153 11 C -0.152 4.152 12 C 0.237 3.763 13 O -0.450 6.450 14 N -0.211 5.211 15 C -0.423 4.423 16 H 0.119 0.881 17 C -0.181 4.181 18 N -0.549 5.549 19 Si 0.754 3.246 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.167 0.833 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.221 0.779 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.222 0.778 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.817 3.477 -14.684 15.199 hybrid contribution -1.246 1.304 0.487 1.868 sum 0.570 4.781 -14.197 14.992 Atomic orbital electron populations 1.22294 0.95169 1.02698 1.02199 1.21385 0.93908 0.97082 0.91649 0.90708 1.60262 1.32991 1.28116 1.05720 1.21688 0.92689 0.90448 0.92503 1.23162 0.87883 0.96588 0.95717 1.86456 1.33806 1.37971 1.78962 1.22108 0.94976 1.01234 0.95979 1.22338 0.95755 1.00809 0.97062 1.22382 0.96784 1.00512 0.95601 1.22431 0.93657 0.97730 1.01393 1.19926 0.85282 0.87303 0.83830 1.90503 1.40759 1.27603 1.86160 1.41916 1.46762 1.28083 1.04338 1.19739 1.28702 1.10587 0.83246 0.88051 1.25208 0.97221 0.96611 0.99099 1.69619 1.37418 1.23235 1.24627 0.85843 0.78426 0.79263 0.81070 1.19302 1.20903 1.20889 0.92379 0.91967 0.91539 0.83280 0.93506 0.93724 0.77888 0.90710 0.91902 0.92370 0.91857 0.92186 0.90235 0.92030 0.90180 0.77763 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 8.93 37.16 0.33 -2.32 16 2 C 0.07 1.34 1.62 -68.86 -0.11 1.23 16 3 H 0.08 1.29 5.34 -51.93 -0.28 1.02 16 4 N -0.64 -10.95 5.36 -93.13 -0.50 -11.45 16 5 C 0.12 1.67 0.61 -130.48 -0.08 1.59 16 6 C 0.05 0.54 4.99 37.16 0.19 0.72 16 7 O -0.57 -6.19 12.00 -35.23 -0.42 -6.61 16 8 C -0.11 -1.36 6.01 -25.61 -0.15 -1.51 16 9 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 10 C -0.12 -1.61 6.91 -24.74 -0.17 -1.78 16 11 C -0.11 -1.66 5.52 -25.07 -0.14 -1.80 16 12 C 0.45 10.99 7.02 -10.99 -0.08 10.91 16 13 O -0.57 -16.00 16.01 5.55 0.09 -15.91 16 14 N -0.57 -14.83 5.16 -10.96 -0.06 -14.89 16 15 C -0.29 -8.35 9.68 -14.93 -0.14 -8.50 16 16 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 17 C 0.02 0.52 5.50 -17.47 -0.10 0.43 16 18 N -0.91 -25.12 13.05 55.50 0.72 -24.40 16 19 Si 0.93 21.52 29.55 -169.99 -5.02 16.50 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H 0.06 0.78 7.00 -51.93 -0.36 0.42 16 24 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 25 H 0.07 1.10 7.48 -51.93 -0.39 0.71 16 26 H 0.35 5.79 7.66 -39.30 -0.30 5.49 16 27 H 0.05 0.56 6.58 -51.93 -0.34 0.22 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.37 2.49 9.12 45.56 0.42 2.91 16 30 H 0.07 1.06 7.92 -51.93 -0.41 0.65 16 31 H 0.06 0.74 7.52 -51.93 -0.39 0.35 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 0.75 7.86 -51.93 -0.41 0.35 16 37 H 0.08 1.42 6.35 -51.93 -0.33 1.09 16 38 H 0.39 9.68 7.28 -40.82 -0.30 9.39 16 39 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 310.47 15.07 4.68 4.68 Total: -1.00 -32.15 310.47 -6.28 -38.43 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -5.14 Total: 16.30 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.63 Total: -2.65 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.17 Total: -50.74 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.33 Total: -22.52 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.15 -6.28 -38.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309466607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.372 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds