Wall clock time and date at job start Mon Mar 30 2020 04:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46964 * 2 1 4 4 N 1.46506 * 109.47120 * 119.99872 * 2 1 3 5 5 C 1.36936 * 119.99672 * 125.36704 * 4 2 1 6 6 H 1.08003 * 120.00238 * 321.96813 * 5 4 2 7 7 C 1.38807 * 120.00067 * 141.97082 * 5 4 2 8 8 N 1.31621 * 120.00387 * 155.94200 * 7 5 4 9 9 Si 1.86800 * 119.99856 * 335.94463 * 7 5 4 10 10 H 1.48505 * 109.47168 * 95.24331 * 9 7 5 11 11 H 1.48495 * 109.47124 * 215.24186 * 9 7 5 12 12 H 1.48493 * 109.47333 * 335.24603 * 9 7 5 13 13 C 1.46492 * 120.00028 * 305.36780 * 4 2 1 14 14 C 1.52998 * 109.47412 * 89.99930 * 13 4 2 15 15 C 1.52997 * 109.47511 * 180.02562 * 14 13 4 16 16 N 1.46903 * 109.47529 * 180.02562 * 15 14 13 17 17 C 1.47016 * 110.99408 * 293.63395 * 16 15 14 18 18 C 1.53102 * 109.25351 * 177.60664 * 17 16 15 19 19 O 1.43020 * 109.25753 * 56.84857 * 18 17 16 20 20 C 1.43014 * 113.73674 * 301.32415 * 19 18 17 21 21 C 1.47017 * 111.00142 * 169.99666 * 16 15 14 22 22 H 1.08997 * 109.47008 * 299.99933 * 1 2 3 23 23 H 1.09004 * 109.47157 * 60.00152 * 1 2 3 24 24 H 1.08998 * 109.47047 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47008 * 240.00067 * 2 1 3 26 26 H 1.09003 * 109.47441 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47374 * 300.00273 * 3 2 1 28 28 H 1.09008 * 109.47335 * 59.99773 * 3 2 1 29 29 H 0.96993 * 120.00095 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.47195 * 330.00193 * 13 4 2 31 31 H 1.09000 * 109.47448 * 210.00049 * 13 4 2 32 32 H 1.08998 * 109.47016 * 59.99690 * 14 13 4 33 33 H 1.09004 * 109.47029 * 299.99713 * 14 13 4 34 34 H 1.08998 * 109.47378 * 59.99735 * 15 14 13 35 35 H 1.09009 * 109.47052 * 299.99938 * 15 14 13 36 36 H 1.09000 * 109.50424 * 297.53730 * 17 16 15 37 37 H 1.08999 * 109.50928 * 57.67351 * 17 16 15 38 38 H 1.08997 * 109.50760 * 296.91357 * 18 17 16 39 39 H 1.08998 * 109.53944 * 176.80103 * 18 17 16 40 40 H 1.08996 * 109.51030 * 298.73777 * 20 19 18 41 41 H 1.09005 * 109.53903 * 178.62662 * 20 19 18 42 42 H 1.08997 * 109.50675 * 302.32985 * 21 16 15 43 43 H 1.09007 * 109.50317 * 62.41227 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8938 -1.7365 1.0735 6 1 2.7843 -2.4399 0.2614 7 6 3.9218 -1.8926 1.9930 8 7 4.4557 -3.0797 2.1882 9 14 4.5477 -0.4178 2.9536 10 1 3.8632 -0.3577 4.2701 11 1 6.0120 -0.5484 3.1626 12 1 4.2654 0.8252 2.1918 13 6 1.5702 -0.2623 2.5235 14 6 0.3052 -1.0323 2.9078 15 6 -0.1633 -0.5846 4.2937 16 7 -1.3776 -1.3243 4.6629 17 6 -2.5016 -0.9623 3.7872 18 6 -3.7271 -1.7976 4.1673 19 8 -4.0291 -1.5901 5.5498 20 6 -2.9563 -1.9332 6.4312 21 6 -1.7230 -1.0993 6.0741 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 5.1738 -3.1888 2.8310 30 1 1.3543 0.8060 2.5069 31 1 2.3538 -0.4633 3.2540 32 1 0.5210 -2.1006 2.9243 33 1 -0.4785 -0.8312 2.1773 34 1 -0.3792 0.4837 4.2768 35 1 0.6203 -0.7853 5.0245 36 1 -2.7310 0.0964 3.9083 37 1 -2.2333 -1.1609 2.7496 38 1 -3.5158 -2.8529 3.9953 39 1 -4.5788 -1.4930 3.5591 40 1 -2.7226 -2.9925 6.3250 41 1 -3.2498 -1.7265 7.4604 42 1 -0.8864 -1.3978 6.7057 43 1 -1.9392 -0.0425 6.2318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130990448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:33 Heat of formation + Delta-G solvation = -22.082412 kcal Electronic energy + Delta-G solvation = -20441.234391 eV Core-core repulsion = 17522.206470 eV Total energy + Delta-G solvation = -2919.027921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.54145 -37.29291 -35.80444 -32.54988 -31.89706 -31.16901 -29.69708 -27.25873 -26.47622 -24.31061 -24.00439 -22.97713 -20.91636 -20.23648 -19.03150 -16.98944 -16.33915 -16.15330 -15.69048 -15.14344 -15.05514 -14.58821 -14.41871 -13.80403 -13.52860 -13.34720 -13.03273 -12.49329 -12.24671 -12.24062 -11.92454 -11.83877 -11.58876 -11.46085 -11.37639 -10.85104 -10.77261 -10.65329 -10.54709 -10.48614 -10.19226 -9.82165 -9.71179 -9.62912 -9.36275 -8.44628 -8.27242 -6.78206 -5.97471 -3.36266 3.32056 3.48026 3.54137 3.73899 3.91701 4.55439 4.83723 4.93721 4.99795 5.07377 5.11934 5.24163 5.33540 5.47496 5.52087 5.58031 5.68578 5.71643 5.76546 5.79802 5.93730 5.95709 5.99813 6.10709 6.14958 6.18547 6.33723 6.39417 6.42146 6.49493 6.59658 6.87851 6.96391 7.00777 7.01679 7.09241 7.14465 7.26059 8.10380 8.43131 9.04770 9.75831 10.18769 11.18410 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.021667 B = 0.006054 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.959501 B = 4624.288781 C = 5300.532678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.163 3.837 3 C -0.164 4.164 4 N -0.598 5.598 5 C -0.265 4.265 6 H 0.077 0.923 7 C 0.038 3.962 8 N -0.898 5.898 9 Si 0.873 3.127 10 H -0.287 1.287 11 H -0.303 1.303 12 H -0.268 1.268 13 C 0.141 3.859 14 C -0.134 4.134 15 C 0.056 3.944 16 N -0.534 5.534 17 C 0.017 3.983 18 C 0.064 3.936 19 O -0.390 6.390 20 C 0.065 3.935 21 C 0.016 3.984 22 H 0.048 0.952 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.262 0.738 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.544 5.932 4.398 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.057 3.943 3 C -0.224 4.224 4 N -0.320 5.320 5 C -0.394 4.394 6 H 0.094 0.906 7 C -0.162 4.162 8 N -0.539 5.539 9 Si 0.703 3.297 10 H -0.216 1.216 11 H -0.231 1.231 12 H -0.193 1.193 13 C 0.015 3.985 14 C -0.174 4.174 15 C -0.072 4.072 16 N -0.259 5.259 17 C -0.111 4.111 18 C -0.013 4.013 19 O -0.309 6.309 20 C -0.012 4.012 21 C -0.112 4.112 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.474 5.387 4.455 15.180 hybrid contribution 0.682 1.601 0.736 1.889 sum -12.792 6.988 5.192 15.473 Atomic orbital electron populations 1.22340 0.98364 1.01088 0.99952 1.20482 0.91578 0.91170 0.91095 1.22339 1.01537 0.98809 0.99666 1.44145 1.51258 1.37119 0.99440 1.18761 1.04922 1.01338 1.14359 0.90577 1.25466 0.96619 0.95920 0.98236 1.69898 1.27362 1.21132 1.35501 0.86997 0.77181 0.85925 0.79612 1.21555 1.23108 1.19295 1.21016 0.94184 0.95078 0.88236 1.22337 0.98856 1.03060 0.93144 1.22216 0.90919 0.94532 0.99487 1.62237 1.03993 1.57710 1.01987 1.22810 0.91459 0.97877 0.99004 1.22684 0.96794 0.99601 0.82263 1.87941 1.38756 1.87601 1.16591 1.22648 0.86267 0.98693 0.93640 1.22780 0.98842 0.98756 0.90836 0.93341 0.93907 0.92776 0.91290 0.92839 0.93953 0.93891 0.92816 0.94764 0.93086 0.90516 0.92109 0.95475 0.90983 0.94408 0.88998 0.92153 0.88689 0.92195 0.88765 0.89695 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 7.93 37.16 0.29 -2.29 16 2 C 0.16 3.19 3.32 -67.93 -0.23 2.97 16 3 C -0.16 -2.92 9.26 37.16 0.34 -2.58 16 4 N -0.60 -13.81 1.99 -165.67 -0.33 -14.14 16 5 C -0.27 -7.30 9.81 -15.06 -0.15 -7.45 16 6 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 7 C 0.04 1.09 5.27 -17.43 -0.09 1.00 16 8 N -0.90 -27.30 13.97 55.49 0.78 -26.52 16 9 Si 0.87 22.16 25.20 -169.99 -4.28 17.88 16 10 H -0.29 -7.10 6.65 56.52 0.38 -6.72 16 11 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.14 3.00 3.80 -4.05 -0.02 2.98 16 14 C -0.13 -2.50 5.18 -26.73 -0.14 -2.64 16 15 C 0.06 0.91 4.96 -3.82 -0.02 0.89 16 16 N -0.53 -7.87 4.73 -234.30 -1.11 -8.97 16 17 C 0.02 0.22 5.44 -3.71 -0.02 0.20 16 18 C 0.06 0.75 7.01 37.21 0.26 1.01 16 19 O -0.39 -5.06 10.83 -35.23 -0.38 -5.44 16 20 C 0.06 0.73 7.01 37.21 0.26 0.99 16 21 C 0.02 0.20 5.65 -3.71 -0.02 0.18 16 22 H 0.05 0.77 6.38 -51.93 -0.33 0.43 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.91 7.94 -51.93 -0.41 0.50 16 25 H 0.07 1.39 7.90 -51.93 -0.41 0.98 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.75 6.88 -51.92 -0.36 0.39 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.03 0.67 6.70 -51.93 -0.35 0.32 16 31 H 0.05 1.21 3.46 -51.93 -0.18 1.03 16 32 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 33 H 0.06 1.06 3.79 -51.93 -0.20 0.86 16 34 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 35 H 0.07 1.21 8.04 -51.92 -0.42 0.79 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 1.22 6.38 -51.93 -0.33 0.89 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 43 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 323.65 15.07 4.88 4.88 Total: -1.00 -30.19 323.65 -7.61 -37.80 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.64 Total: -0.74 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 0.48 Total: -4.74 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.66 Total: -49.64 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.38 Total: -5.44 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.28 Total: 17.88 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.19 -7.61 -37.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130990448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.716 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds