Wall clock time and date at job start Mon Mar 30 2020 04:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.35828 * 119.63016 * 90.00100 * 10 9 7 12 12 Br 1.89102 * 119.66701 * 0.02562 * 11 10 9 13 13 C 1.35564 * 120.66832 * 179.97438 * 11 10 9 14 14 C 1.40067 * 119.92473 * 359.97438 * 13 11 10 15 15 C 1.36482 * 119.28197 * 0.02562 * 14 13 11 16 16 C 1.34657 * 119.63568 * 269.72809 * 10 9 7 17 17 O 1.22079 * 119.96942 * 0.02562 * 16 10 9 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.07997 * 120.03998 * 180.02562 * 13 11 10 22 22 H 1.08001 * 120.35998 * 180.02562 * 14 13 11 23 23 H 1.07994 * 120.33218 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6393 -4.1231 1.1812 12 35 2.0113 -3.3897 2.8072 13 6 3.5196 -5.1537 1.2058 14 6 3.9871 -5.7021 0.0047 15 6 3.5470 -5.1873 -1.1802 16 6 2.6314 -4.1224 -1.1699 17 8 2.2266 -3.6559 -2.2229 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 3.8596 -5.5520 2.1503 22 1 4.6882 -6.5235 0.0160 23 1 3.8966 -5.5969 -2.1163 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057835578.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:56 Heat of formation + Delta-G solvation = -20.082338 kcal Electronic energy + Delta-G solvation = -11892.926131 eV Core-core repulsion = 9559.215379 eV Total energy + Delta-G solvation = -2333.710753 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.17921 -37.98894 -36.17354 -34.43925 -32.80042 -30.01826 -29.60707 -25.85965 -24.28379 -23.25667 -18.95065 -18.40105 -18.29197 -17.10373 -16.64864 -16.38774 -15.32635 -15.07147 -14.44592 -13.93262 -13.64283 -13.42097 -13.01431 -12.89234 -12.71011 -12.34220 -11.97287 -11.55951 -11.23043 -10.92898 -10.77841 -10.67600 -8.94905 -8.31844 -6.46664 -0.23917 0.17061 0.82050 1.35209 1.39049 1.46211 1.87378 2.34149 2.68582 3.00429 3.81811 3.98427 4.22421 4.38441 4.78034 4.92578 4.98805 5.10996 5.24277 5.49389 5.59581 5.81300 6.17411 6.55847 7.06953 7.23093 8.76898 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.022257 B = 0.011755 C = 0.008638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.736136 B = 2381.376160 C = 3240.806228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.224 3.776 10 N -0.476 5.476 11 C 0.135 3.865 12 Br 0.009 6.991 13 C -0.190 4.190 14 C 0.011 3.989 15 C -0.256 4.256 16 C 0.485 3.515 17 O -0.611 6.611 18 H 0.271 0.729 19 H 0.060 0.940 20 H 0.015 0.985 21 H 0.192 0.808 22 H 0.199 0.801 23 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.987 -11.378 9.148 16.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.790 3.210 4 H -0.204 1.204 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.579 4.579 8 H 0.069 0.931 9 C 0.104 3.896 10 N -0.184 5.184 11 C -0.054 4.054 12 Br 0.094 6.906 13 C -0.216 4.216 14 C -0.011 4.011 15 C -0.278 4.278 16 C 0.289 3.711 17 O -0.499 6.499 18 H 0.080 0.920 19 H 0.078 0.922 20 H 0.033 0.967 21 H 0.209 0.791 22 H 0.216 0.784 23 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.269 -10.633 9.100 15.771 hybrid contribution -0.048 1.032 -0.720 1.259 sum 7.220 -9.601 8.380 14.647 Atomic orbital electron populations 1.70013 1.07403 1.28646 1.49631 1.25716 0.95787 1.02686 0.93745 0.85488 0.78471 0.77962 0.79123 1.20380 1.19833 1.18244 1.21191 0.92781 0.90716 1.53234 0.93128 1.19660 0.88259 0.83087 0.98569 1.46013 1.37282 1.29283 1.05850 1.23199 0.99349 0.97183 0.85715 1.96785 1.88098 1.85927 1.19838 1.21213 1.00318 0.97489 1.02579 1.21864 0.93786 0.96249 0.89195 1.22328 1.03300 0.99732 1.02475 1.18018 0.84689 0.86077 0.82281 1.90895 1.62413 1.65397 1.31151 0.91968 0.92229 0.96730 0.79129 0.78421 0.81795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.45 13.29 21.45 0.28 -54.17 14 2 C 0.02 1.22 5.46 84.66 0.46 1.68 14 3 Si 0.97 44.55 29.54 68.60 2.03 46.58 14 4 H -0.28 -12.93 7.11 99.48 0.71 -12.23 14 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 14 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 14 7 C -0.54 -31.18 9.38 25.60 0.24 -30.94 14 8 H 0.05 2.94 7.81 -2.91 -0.02 2.91 14 9 C 0.22 12.25 4.61 85.63 0.40 12.65 14 10 N -0.48 -21.82 2.57 -648.85 -1.67 -23.48 14 11 C 0.14 4.78 6.98 83.46 0.58 5.36 14 12 Br 0.01 0.28 31.53 -20.37 -0.64 -0.36 14 13 C -0.19 -4.66 9.71 22.09 0.21 -4.45 14 14 C 0.01 0.25 10.09 22.30 0.23 0.47 14 15 C -0.26 -8.22 9.99 22.40 0.22 -8.00 14 16 C 0.49 22.52 7.40 84.80 0.63 23.14 14 17 O -0.61 -34.80 16.63 -5.57 -0.09 -34.90 14 18 H 0.27 15.06 8.31 -92.71 -0.77 14.28 14 19 H 0.06 3.19 6.42 -2.39 -0.02 3.18 14 20 H 0.01 0.92 7.38 -2.39 -0.02 0.90 14 21 H 0.19 2.98 8.06 -2.91 -0.02 2.96 14 22 H 0.20 2.00 8.06 -2.91 -0.02 1.97 14 23 H 0.16 4.50 8.06 -2.91 -0.02 4.48 14 Total: -1.00 -73.89 232.61 4.10 -69.79 By element: Atomic # 1 Polarization: -4.60 SS G_CDS: 1.22 Total: -3.38 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 2.97 Total: -0.09 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -1.38 Total: -77.65 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.09 Total: -34.90 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 35 Polarization: 0.28 SS G_CDS: -0.64 Total: -0.36 kcal Total: -73.89 4.10 -69.79 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057835578.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.704 kcal (2) G-P(sol) polarization free energy of solvation -73.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds