Wall clock time and date at job start Mon Mar 30 2020 04:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00013 * 2 1 4 4 C 1.53008 * 109.47001 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.46632 * 66.85422 * 4 3 2 6 6 C 1.46899 * 111.00384 * 58.42770 * 5 4 3 7 7 C 1.50701 * 109.46865 * 66.04772 * 6 5 4 8 8 H 1.08006 * 120.00102 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00229 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00147 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99668 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47338 * 89.99458 * 11 9 7 13 13 H 1.48499 * 109.46722 * 209.99897 * 11 9 7 14 14 H 1.48496 * 109.46911 * 329.99713 * 11 9 7 15 15 C 1.46899 * 111.00013 * 294.47348 * 5 4 3 16 16 H 1.09000 * 109.47124 * 69.85120 * 15 5 4 17 17 C 1.53004 * 109.47345 * 309.85117 * 15 5 4 18 18 C 1.52990 * 109.47342 * 179.97438 * 17 15 5 19 19 C 1.53006 * 109.47263 * 59.99976 * 18 17 15 20 20 C 1.52995 * 109.46822 * 300.00255 * 19 18 17 21 21 C 1.52990 * 109.47410 * 59.99834 * 20 19 18 22 22 H 1.09003 * 109.47287 * 179.97438 * 21 20 19 23 23 N 1.46899 * 109.47318 * 60.00145 * 21 20 19 24 24 H 1.09000 * 109.47581 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47306 * 300.00034 * 1 2 3 26 26 H 1.09001 * 109.47325 * 59.99497 * 1 2 3 27 27 H 1.09000 * 109.47055 * 60.00667 * 3 2 1 28 28 H 1.08995 * 109.47474 * 300.00291 * 3 2 1 29 29 H 1.08997 * 109.47077 * 306.85202 * 4 3 2 30 30 H 1.08999 * 109.46935 * 186.84605 * 4 3 2 31 31 H 1.09005 * 109.47054 * 186.04191 * 6 5 4 32 32 H 1.08994 * 109.47096 * 306.04903 * 6 5 4 33 33 H 0.97001 * 119.99341 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47013 * 300.00072 * 17 15 5 35 35 H 1.09005 * 109.47005 * 59.99884 * 17 15 5 36 36 H 1.09000 * 109.47287 * 300.00102 * 18 17 15 37 37 H 1.09003 * 109.47287 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.46919 * 179.97438 * 19 18 17 39 39 H 1.09000 * 109.46867 * 59.99868 * 19 18 17 40 40 H 1.09005 * 109.46866 * 179.97438 * 20 19 18 41 41 H 1.09000 * 109.47084 * 299.99480 * 20 19 18 42 42 H 1.00896 * 111.00181 * 60.00212 * 23 21 20 43 43 H 1.00903 * 111.00166 * 183.95655 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9810 0.6030 -1.2726 6 6 3.5435 1.4251 -2.4087 7 6 4.2412 2.7601 -2.3608 8 1 4.9394 2.9763 -1.5656 9 6 3.9882 3.7055 -3.3320 10 7 4.5967 4.8706 -3.2899 11 14 2.7801 3.3317 -4.7069 12 1 1.4162 3.7507 -4.2950 13 1 3.1776 4.0737 -5.9303 14 1 2.7861 1.8737 -4.9883 15 6 3.5100 -0.7814 -1.4124 16 1 2.4298 -0.7847 -1.5578 17 6 3.8567 -1.5683 -0.1469 18 6 3.3656 -3.0100 -0.2922 19 6 4.0442 -3.6607 -1.4994 20 6 3.6975 -2.8738 -2.7648 21 6 4.1886 -1.4321 -2.6194 22 1 3.9420 -0.8716 -3.5212 23 7 5.6445 -1.4281 -2.4238 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8486 0.5417 0.8232 30 1 3.9782 2.1731 0.1231 31 1 3.7925 0.9183 -3.3411 32 1 2.4655 1.5764 -2.3539 33 1 4.4183 5.5358 -3.9731 34 1 4.9369 -1.5650 -0.0015 35 1 3.3729 -1.1050 0.7130 36 1 2.2853 -3.0130 -0.4374 37 1 3.6130 -3.5707 0.6092 38 1 3.6946 -4.6879 -1.6026 39 1 5.1245 -3.6577 -1.3542 40 1 4.1813 -3.3371 -3.6247 41 1 2.6172 -2.8768 -2.9100 42 1 6.1159 -1.8529 -3.2083 43 1 5.9849 -0.4923 -2.2609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070845089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:32 Heat of formation + Delta-G solvation = -42.880386 kcal Electronic energy + Delta-G solvation = -21374.110942 eV Core-core repulsion = 18454.181153 eV Total energy + Delta-G solvation = -2919.929789 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.39946 -37.40984 -35.34849 -32.61488 -32.43982 -29.78418 -29.17082 -27.83315 -26.41671 -25.37217 -23.20429 -21.77309 -21.15115 -19.58495 -18.35663 -16.93142 -16.22613 -16.14954 -15.31352 -15.03356 -14.73368 -14.36308 -14.04001 -13.85657 -13.56897 -13.35399 -12.65824 -12.43394 -12.20468 -12.11877 -11.73335 -11.50044 -11.34622 -11.30090 -11.23809 -10.79893 -10.71263 -10.60212 -10.31094 -10.12600 -9.98341 -9.67604 -9.51629 -9.31959 -8.98154 -8.59993 -7.96746 -7.18766 -6.08608 -4.04981 3.22550 3.31537 3.33700 4.13452 4.38024 4.80175 5.05167 5.16251 5.23415 5.39549 5.43941 5.44852 5.49227 5.69969 5.74493 5.76443 5.80873 5.88257 5.92410 5.93996 6.00858 6.08494 6.13294 6.26202 6.31650 6.42785 6.57813 6.65748 6.67763 6.72403 6.83306 6.90058 7.01966 7.09408 7.48204 7.62000 7.78467 8.02075 8.14014 8.15380 8.67066 9.01253 9.54333 11.04456 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.019027 B = 0.008361 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.272797 B = 3348.056538 C = 3992.608329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.379 6.379 3 C 0.018 3.982 4 C 0.067 3.933 5 N -0.517 5.517 6 C 0.155 3.845 7 C -0.506 4.506 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.871 3.129 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.093 3.907 16 H 0.054 0.946 17 C -0.097 4.097 18 C -0.110 4.110 19 C -0.108 4.108 20 C -0.110 4.110 21 C 0.096 3.904 22 H 0.030 0.970 23 N -0.835 5.835 24 H 0.078 0.922 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.026 0.974 32 H -0.014 1.014 33 H 0.263 0.737 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.323 0.677 43 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.235 -13.343 4.608 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.298 6.298 3 C -0.059 4.059 4 C -0.062 4.062 5 N -0.240 5.240 6 C 0.029 3.971 7 C -0.544 4.544 8 H 0.099 0.901 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.698 3.302 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.016 4.016 16 H 0.072 0.928 17 C -0.135 4.135 18 C -0.148 4.148 19 C -0.145 4.145 20 C -0.148 4.148 21 C -0.016 4.016 22 H 0.047 0.953 23 N -0.366 5.366 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.044 0.956 32 H 0.003 0.997 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.134 0.866 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.735 -13.772 5.144 15.445 hybrid contribution -1.913 0.950 -1.841 2.820 sum -6.648 -12.822 3.303 14.816 Atomic orbital electron populations 1.22655 0.82904 1.01770 0.99479 1.88030 1.18261 1.28468 1.95073 1.23495 0.97498 0.84412 1.00536 1.22239 0.89253 1.01503 0.93156 1.62060 1.58798 1.00706 1.02387 1.20283 0.93589 0.93697 0.89573 1.21068 1.25327 0.96044 1.11992 0.90070 1.24889 0.95849 0.94995 0.97516 1.69892 1.43036 1.05851 1.35104 0.86937 0.81890 0.78762 0.82582 1.20502 1.21198 1.19347 1.21680 0.96829 0.88826 0.94273 0.92803 1.21453 1.01497 0.93474 0.97068 1.21424 0.99435 0.96686 0.97219 1.21386 1.01706 0.96840 0.94584 1.21542 0.99935 0.95589 0.97762 1.21330 0.89291 0.94238 0.96694 0.95260 1.58747 1.03762 1.28118 1.45943 0.90392 0.94710 0.94663 0.94069 0.92011 0.91012 0.88556 0.95632 0.99667 0.92731 0.91077 0.92027 0.93029 0.93087 0.93784 0.90803 0.92875 0.92555 0.86631 0.82618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.38 -6.14 6.30 -35.23 -0.22 -6.37 16 3 C 0.02 0.32 5.75 37.16 0.21 0.54 16 4 C 0.07 1.25 5.33 -3.82 -0.02 1.23 16 5 N -0.52 -10.34 3.83 -228.08 -0.87 -11.21 16 6 C 0.15 3.62 3.39 -4.98 -0.02 3.61 16 7 C -0.51 -13.79 9.09 -34.44 -0.31 -14.10 16 8 H 0.08 2.40 7.34 -52.48 -0.39 2.02 16 9 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 10 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 11 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 15 C 0.09 1.63 1.01 -67.71 -0.07 1.56 16 16 H 0.05 1.03 5.93 -51.93 -0.31 0.72 16 17 C -0.10 -1.53 4.10 -26.73 -0.11 -1.64 16 18 C -0.11 -1.50 5.92 -26.73 -0.16 -1.66 16 19 C -0.11 -1.42 5.77 -26.73 -0.15 -1.57 16 20 C -0.11 -1.55 5.60 -26.74 -0.15 -1.70 16 21 C 0.10 1.61 2.90 -67.72 -0.20 1.42 16 22 H 0.03 0.56 6.36 -51.93 -0.33 0.23 16 23 N -0.83 -13.23 7.72 -4.67 -0.04 -13.27 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.23 5.90 -51.93 -0.31 0.92 16 29 H 0.07 1.22 5.85 -51.93 -0.30 0.92 16 30 H 0.10 1.95 6.90 -51.93 -0.36 1.59 16 31 H 0.03 0.63 5.13 -51.93 -0.27 0.36 16 32 H -0.01 -0.34 5.25 -51.93 -0.27 -0.61 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.07 1.20 7.60 -51.93 -0.39 0.80 16 35 H 0.06 1.00 5.20 -51.93 -0.27 0.73 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 1.02 7.60 -51.93 -0.39 0.63 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.32 4.53 9.04 -39.29 -0.36 4.17 16 43 H 0.36 6.44 8.30 -39.29 -0.33 6.12 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -28.54 313.37 -7.51 -36.04 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.24 Total: 8.64 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 0.04 Total: -8.99 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.14 Total: -50.74 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.22 Total: -6.37 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.54 -7.51 -36.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070845089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.838 kcal (2) G-P(sol) polarization free energy of solvation -28.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds