Wall clock time and date at job start Mon Mar 30 2020 04:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42894 * 113.99675 * 2 1 4 4 C 1.53001 * 109.46987 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47341 * 64.99590 * 4 3 2 6 6 C 1.46903 * 111.00234 * 190.00607 * 5 4 3 7 7 C 1.50703 * 109.47265 * 75.66314 * 6 5 4 8 8 H 1.07995 * 119.99849 * 355.38482 * 7 6 5 9 9 C 1.37877 * 119.99620 * 175.09743 * 7 6 5 10 10 N 1.31520 * 120.00162 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99862 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46959 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.46969 * 120.00307 * 11 9 7 14 14 H 1.48500 * 109.47087 * 240.00284 * 11 9 7 15 15 C 1.46896 * 111.00051 * 66.04878 * 5 4 3 16 16 H 1.08998 * 109.47222 * 313.12483 * 15 5 4 17 17 C 1.52996 * 109.47295 * 73.12837 * 15 5 4 18 18 C 1.52996 * 109.47596 * 179.97438 * 17 15 5 19 19 C 1.53001 * 109.47130 * 300.00160 * 18 17 15 20 20 C 1.53000 * 109.47318 * 59.99621 * 19 18 17 21 21 C 1.53003 * 109.46898 * 300.00135 * 20 19 18 22 22 H 1.08998 * 109.47344 * 300.00137 * 21 20 19 23 23 N 1.46903 * 109.47052 * 179.97438 * 21 20 19 24 24 H 1.08998 * 109.47277 * 300.00137 * 1 2 3 25 25 H 1.08998 * 109.47078 * 60.00488 * 1 2 3 26 26 H 1.09000 * 109.46819 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47713 * 59.99800 * 3 2 1 28 28 H 1.08998 * 109.47448 * 299.99152 * 3 2 1 29 29 H 1.09006 * 109.46877 * 304.99206 * 4 3 2 30 30 H 1.08998 * 109.47384 * 185.00094 * 4 3 2 31 31 H 1.09004 * 109.46768 * 315.66706 * 6 5 4 32 32 H 1.08998 * 109.47292 * 195.67165 * 6 5 4 33 33 H 0.97005 * 119.99670 * 179.97438 * 10 9 7 34 34 H 1.09003 * 109.47301 * 300.00284 * 17 15 5 35 35 H 1.08998 * 109.47275 * 59.99678 * 17 15 5 36 36 H 1.08995 * 109.47634 * 179.97438 * 18 17 15 37 37 H 1.09008 * 109.46978 * 59.99581 * 18 17 15 38 38 H 1.08998 * 109.47215 * 299.99604 * 19 18 17 39 39 H 1.08998 * 109.47352 * 179.97438 * 19 18 17 40 40 H 1.08994 * 109.47525 * 180.02562 * 20 19 18 41 41 H 1.08998 * 109.46991 * 59.99846 * 20 19 18 42 42 H 1.00893 * 111.00056 * 59.99634 * 23 21 20 43 43 H 1.00899 * 111.00305 * 183.95751 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9769 0.5627 -1.2561 6 6 5.4027 0.2136 -1.1978 7 6 5.5839 -1.0189 -0.3498 8 1 4.7368 -1.4520 0.1614 9 6 6.8299 -1.5971 -0.2314 10 7 7.8605 -1.0727 -0.8581 11 14 7.0545 -3.1253 0.8191 12 1 5.7499 -3.5140 1.4128 13 1 7.5641 -4.2357 -0.0249 14 1 8.0277 -2.8415 1.9042 15 6 3.6950 1.4354 -2.4035 16 1 2.6738 1.8098 -2.3331 17 6 4.6714 2.6134 -2.4004 18 6 4.3783 3.5221 -3.5959 19 6 4.5423 2.7273 -4.8929 20 6 3.5659 1.5493 -4.8961 21 6 3.8591 0.6406 -3.7006 22 1 4.8804 0.2662 -3.7706 23 7 2.9213 -0.4901 -3.7033 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8514 0.5683 0.8411 30 1 3.9785 2.1765 0.0889 31 1 5.9617 1.0409 -0.7604 32 1 5.7705 0.0189 -2.2052 33 1 8.7372 -1.4794 -0.7745 34 1 4.5549 3.1794 -1.4761 35 1 5.6926 2.2390 -2.4708 36 1 5.0735 4.3615 -3.5933 37 1 3.3569 3.8964 -3.5259 38 1 5.5635 2.3529 -4.9630 39 1 4.3330 3.3745 -5.7446 40 1 3.6830 0.9828 -5.8199 41 1 2.5446 1.9237 -4.8261 42 1 3.0097 -1.0312 -4.5503 43 1 3.0520 -1.0703 -2.8883 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070845093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:34 Heat of formation + Delta-G solvation = -53.499452 kcal Electronic energy + Delta-G solvation = -20954.878343 eV Core-core repulsion = 18034.488077 eV Total energy + Delta-G solvation = -2920.390266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.23866 -37.27891 -35.19316 -32.95665 -32.51503 -29.86256 -28.89449 -27.43302 -26.14812 -25.19639 -22.72453 -22.27119 -21.23084 -20.13342 -18.45588 -16.49377 -15.94557 -15.62526 -15.15204 -14.84130 -14.76447 -14.44865 -14.22891 -13.79660 -13.72779 -13.25055 -12.70637 -12.53560 -12.10093 -12.01995 -11.83640 -11.38924 -11.23509 -11.14492 -11.01273 -10.88404 -10.65398 -10.51673 -10.38053 -10.23126 -10.13552 -9.71487 -9.49576 -9.18215 -9.05695 -8.38393 -7.93032 -7.06176 -5.97604 -3.97546 3.33873 3.41619 3.48356 4.29388 4.47230 4.84733 4.92899 5.10008 5.28035 5.38244 5.44971 5.48427 5.56647 5.60772 5.70148 5.73543 5.80256 5.85441 5.87174 5.90281 5.94456 6.03768 6.07910 6.15000 6.30208 6.36132 6.46393 6.48401 6.58490 6.63356 6.72177 6.86370 7.29557 7.38487 7.69150 7.86321 7.92845 8.19410 8.25235 8.29630 8.64112 9.12982 9.66664 11.12664 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.014646 B = 0.008382 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.265479 B = 3339.519016 C = 4415.108486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.362 6.362 3 C 0.068 3.932 4 C 0.062 3.938 5 N -0.517 5.517 6 C 0.191 3.809 7 C -0.499 4.499 8 H 0.066 0.934 9 C 0.053 3.947 10 N -0.902 5.902 11 Si 0.894 3.106 12 H -0.271 1.271 13 H -0.286 1.286 14 H -0.287 1.287 15 C 0.092 3.908 16 H 0.072 0.928 17 C -0.155 4.155 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.110 4.110 21 C 0.104 3.896 22 H 0.039 0.961 23 N -0.842 5.842 24 H 0.029 0.971 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.035 0.965 31 H -0.012 1.012 32 H 0.033 0.967 33 H 0.258 0.742 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.323 0.677 43 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.302 7.324 -4.201 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C -0.009 4.009 4 C -0.066 4.066 5 N -0.239 5.239 6 C 0.066 3.934 7 C -0.538 4.538 8 H 0.084 0.916 9 C -0.147 4.147 10 N -0.542 5.542 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.212 1.212 14 H -0.213 1.213 15 C -0.018 4.018 16 H 0.091 0.909 17 C -0.195 4.195 18 C -0.150 4.150 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.008 4.008 22 H 0.057 0.943 23 N -0.372 5.372 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.053 0.947 31 H 0.006 0.994 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.837 7.215 -4.218 13.686 hybrid contribution 1.457 -0.371 0.621 1.626 sum -9.381 6.844 -3.597 12.157 Atomic orbital electron populations 1.22643 0.82933 1.02030 0.98829 1.88101 1.17703 1.27199 1.94994 1.22638 0.94948 0.84873 0.98412 1.21996 0.91547 0.97639 0.95444 1.62195 1.22216 1.39486 1.00045 1.19778 0.81035 0.95114 0.97483 1.21293 0.93914 1.10410 1.28161 0.91600 1.24983 0.96040 0.97546 0.96179 1.69974 0.99936 1.40769 1.43521 0.86494 0.78094 0.83056 0.80122 1.19571 1.21232 1.21292 1.21699 0.97752 0.90736 0.91598 0.90949 1.22282 1.02005 0.97786 0.97435 1.21459 1.00842 0.97744 0.94971 1.21516 0.99939 0.96972 0.97197 1.21548 0.99364 0.96201 0.97696 1.21221 0.94378 0.91662 0.93526 0.94276 1.58743 1.56215 1.14429 1.07813 0.95278 0.94697 0.90243 0.94519 0.93889 0.89363 0.94725 0.99383 0.94913 0.93194 0.92479 0.90896 0.92668 0.92560 0.92024 0.92494 0.92664 0.91806 0.86645 0.82139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.36 -6.51 10.65 -35.23 -0.38 -6.89 16 3 C 0.07 1.12 6.02 37.16 0.22 1.35 16 4 C 0.06 1.19 5.07 -3.83 -0.02 1.17 16 5 N -0.52 -10.76 3.55 -228.08 -0.81 -11.57 16 6 C 0.19 4.80 3.28 -4.97 -0.02 4.78 16 7 C -0.50 -13.91 8.61 -34.44 -0.30 -14.21 16 8 H 0.07 1.87 7.66 -52.49 -0.40 1.47 16 9 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 10 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 11 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.09 1.64 1.71 -67.71 -0.12 1.53 16 16 H 0.07 1.28 5.92 -51.93 -0.31 0.97 16 17 C -0.16 -2.62 4.50 -26.74 -0.12 -2.74 16 18 C -0.11 -1.54 5.92 -26.73 -0.16 -1.70 16 19 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 20 C -0.11 -1.58 5.50 -26.73 -0.15 -1.72 16 21 C 0.10 1.82 2.65 -67.71 -0.18 1.64 16 22 H 0.04 0.80 6.39 -51.93 -0.33 0.47 16 23 N -0.84 -14.45 9.25 -4.66 -0.04 -14.49 16 24 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.68 6.13 -51.93 -0.32 0.36 16 29 H 0.09 1.89 7.32 -51.93 -0.38 1.51 16 30 H 0.03 0.63 6.56 -51.93 -0.34 0.29 16 31 H -0.01 -0.31 7.33 -51.93 -0.38 -0.69 16 32 H 0.03 0.89 5.94 -51.93 -0.31 0.58 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.06 0.95 6.71 -51.93 -0.35 0.60 16 35 H 0.07 1.43 6.66 -51.93 -0.35 1.08 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.32 4.91 9.04 -39.30 -0.36 4.55 16 43 H 0.36 7.14 8.30 -39.29 -0.33 6.81 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -29.42 326.94 -8.07 -37.49 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.51 Total: 8.27 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 0.03 Total: -8.69 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.12 Total: -52.01 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.38 Total: -6.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.42 -8.07 -37.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070845093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.013 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds