Wall clock time and date at job start Mon Mar 30 2020 04:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42894 * 113.99675 * 2 1 4 4 C 1.53001 * 109.46987 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47341 * 64.99590 * 4 3 2 6 6 C 1.46903 * 111.00234 * 190.00607 * 5 4 3 7 7 C 1.50703 * 109.47265 * 75.66314 * 6 5 4 8 8 H 1.07995 * 119.99849 * 355.38482 * 7 6 5 9 9 C 1.37877 * 119.99620 * 175.09743 * 7 6 5 10 10 N 1.31520 * 120.00162 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99862 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46959 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.46969 * 120.00307 * 11 9 7 14 14 H 1.48500 * 109.47087 * 240.00284 * 11 9 7 15 15 C 1.46896 * 111.00051 * 66.04878 * 5 4 3 16 16 H 1.08998 * 109.47222 * 313.12483 * 15 5 4 17 17 C 1.52996 * 109.47295 * 73.12837 * 15 5 4 18 18 C 1.52996 * 109.47596 * 179.97438 * 17 15 5 19 19 C 1.53001 * 109.47130 * 300.00160 * 18 17 15 20 20 C 1.53000 * 109.47318 * 59.99621 * 19 18 17 21 21 C 1.53003 * 109.46898 * 300.00135 * 20 19 18 22 22 H 1.08998 * 109.47344 * 300.00137 * 21 20 19 23 23 N 1.46903 * 109.47052 * 179.97438 * 21 20 19 24 24 H 1.08998 * 109.47277 * 300.00137 * 1 2 3 25 25 H 1.08998 * 109.47078 * 60.00488 * 1 2 3 26 26 H 1.09000 * 109.46819 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47713 * 59.99800 * 3 2 1 28 28 H 1.08998 * 109.47448 * 299.99152 * 3 2 1 29 29 H 1.09006 * 109.46877 * 304.99206 * 4 3 2 30 30 H 1.08998 * 109.47384 * 185.00094 * 4 3 2 31 31 H 1.09004 * 109.46768 * 315.66706 * 6 5 4 32 32 H 1.08998 * 109.47292 * 195.67165 * 6 5 4 33 33 H 0.97005 * 119.99670 * 179.97438 * 10 9 7 34 34 H 1.09003 * 109.47301 * 300.00284 * 17 15 5 35 35 H 1.08998 * 109.47275 * 59.99678 * 17 15 5 36 36 H 1.08995 * 109.47634 * 179.97438 * 18 17 15 37 37 H 1.09008 * 109.46978 * 59.99581 * 18 17 15 38 38 H 1.08998 * 109.47215 * 299.99604 * 19 18 17 39 39 H 1.08998 * 109.47352 * 179.97438 * 19 18 17 40 40 H 1.08994 * 109.47525 * 180.02562 * 20 19 18 41 41 H 1.08998 * 109.46991 * 59.99846 * 20 19 18 42 42 H 1.00893 * 111.00056 * 59.99634 * 23 21 20 43 43 H 1.00899 * 111.00305 * 183.95751 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9769 0.5627 -1.2561 6 6 5.4027 0.2136 -1.1978 7 6 5.5839 -1.0189 -0.3498 8 1 4.7368 -1.4520 0.1614 9 6 6.8299 -1.5971 -0.2314 10 7 7.8605 -1.0727 -0.8581 11 14 7.0545 -3.1253 0.8191 12 1 5.7499 -3.5140 1.4128 13 1 7.5641 -4.2357 -0.0249 14 1 8.0277 -2.8415 1.9042 15 6 3.6950 1.4354 -2.4035 16 1 2.6738 1.8098 -2.3331 17 6 4.6714 2.6134 -2.4004 18 6 4.3783 3.5221 -3.5959 19 6 4.5423 2.7273 -4.8929 20 6 3.5659 1.5493 -4.8961 21 6 3.8591 0.6406 -3.7006 22 1 4.8804 0.2662 -3.7706 23 7 2.9213 -0.4901 -3.7033 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8514 0.5683 0.8411 30 1 3.9785 2.1765 0.0889 31 1 5.9617 1.0409 -0.7604 32 1 5.7705 0.0189 -2.2052 33 1 8.7372 -1.4794 -0.7745 34 1 4.5549 3.1794 -1.4761 35 1 5.6926 2.2390 -2.4708 36 1 5.0735 4.3615 -3.5933 37 1 3.3569 3.8964 -3.5259 38 1 5.5635 2.3529 -4.9630 39 1 4.3330 3.3745 -5.7446 40 1 3.6830 0.9828 -5.8199 41 1 2.5446 1.9237 -4.8261 42 1 3.0097 -1.0312 -4.5503 43 1 3.0520 -1.0703 -2.8883 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070845093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:34 Heat of formation + Delta-G solvation = -74.919078 kcal Electronic energy + Delta-G solvation = -20955.807168 eV Core-core repulsion = 18034.488077 eV Total energy + Delta-G solvation = -2921.319091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.69440 -38.55450 -36.72521 -34.63009 -34.28725 -31.22105 -30.54439 -28.93781 -27.54139 -26.68611 -24.39997 -23.88426 -22.54125 -21.45262 -20.01833 -18.48267 -17.34544 -17.11022 -16.61328 -16.33531 -16.16238 -16.15015 -15.57253 -15.15510 -15.05302 -14.76218 -14.35840 -13.92428 -13.83752 -13.46531 -13.27581 -12.95311 -12.72527 -12.65165 -12.52042 -12.46421 -12.28524 -12.00091 -11.93644 -11.63566 -11.54201 -11.30122 -11.15032 -10.89391 -10.58305 -10.35778 -9.40834 -8.77268 -8.16837 -6.25565 1.37948 1.39169 1.53247 2.40878 3.05970 3.13602 3.32438 3.60620 3.84943 4.02554 4.21036 4.22488 4.31660 4.36955 4.42748 4.45104 4.58339 4.59700 4.65302 4.67642 4.69505 4.74662 4.92124 4.94956 4.97236 5.08690 5.11616 5.19780 5.24880 5.26216 5.30147 5.36777 5.38655 5.56115 5.71301 6.14383 6.42476 6.43130 6.55174 6.76430 6.81011 6.92731 7.43702 8.92505 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.014646 B = 0.008382 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.265479 B = 3339.519016 C = 4415.108486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.399 6.399 3 C 0.078 3.922 4 C 0.060 3.940 5 N -0.521 5.521 6 C 0.217 3.783 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.002 3.998 10 N -0.935 5.935 11 Si 0.962 3.038 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.279 1.279 15 C 0.094 3.906 16 H 0.086 0.914 17 C -0.151 4.151 18 C -0.106 4.106 19 C -0.117 4.117 20 C -0.101 4.101 21 C 0.104 3.896 22 H -0.002 1.002 23 N -0.834 5.834 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.043 0.957 31 H -0.041 1.041 32 H 0.006 0.994 33 H 0.261 0.739 34 H 0.057 0.943 35 H 0.034 0.966 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.334 0.666 43 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.246 8.081 -4.568 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.318 6.318 3 C 0.001 3.999 4 C -0.069 4.069 5 N -0.244 5.244 6 C 0.091 3.909 7 C -0.551 4.551 8 H 0.074 0.926 9 C -0.195 4.195 10 N -0.576 5.576 11 Si 0.787 3.213 12 H -0.191 1.191 13 H -0.206 1.206 14 H -0.205 1.205 15 C -0.015 4.015 16 H 0.104 0.896 17 C -0.190 4.190 18 C -0.144 4.144 19 C -0.155 4.155 20 C -0.140 4.140 21 C -0.008 4.008 22 H 0.016 0.984 23 N -0.363 5.363 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.061 0.939 31 H -0.024 1.024 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.146 0.854 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.808 7.987 -4.602 15.780 hybrid contribution 2.023 -0.599 0.734 2.234 sum -10.785 7.388 -3.868 13.633 Atomic orbital electron populations 1.22823 0.80551 1.03088 1.00253 1.88044 1.20392 1.28053 1.95323 1.22535 0.92289 0.84858 1.00180 1.22015 0.94216 0.97109 0.93515 1.62101 1.18934 1.41452 1.01895 1.19288 0.83450 0.93238 0.94958 1.21542 0.93776 1.11321 1.28428 0.92564 1.25820 0.95714 1.00644 0.97370 1.70094 1.00411 1.42286 1.44802 0.85442 0.78128 0.79214 0.78490 1.19126 1.20572 1.20510 1.21770 0.98459 0.90711 0.90550 0.89563 1.22199 0.99437 0.98004 0.99408 1.21445 1.02424 0.97281 0.93245 1.21531 0.98687 0.97009 0.98247 1.21497 1.00207 0.95928 0.96326 1.21250 0.92255 0.92310 0.94979 0.98377 1.58787 1.55575 1.14301 1.07673 0.93276 0.93703 0.89521 0.91804 0.92787 0.92362 0.93939 1.02359 0.97632 0.92974 0.92384 0.94676 0.91311 0.90426 0.93823 0.89351 0.91560 0.90506 0.85415 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.96 16 2 O -0.40 -13.88 10.65 -148.98 -1.59 -15.46 16 3 C 0.08 2.44 6.02 71.98 0.43 2.87 16 4 C 0.06 2.32 5.07 86.30 0.44 2.76 16 5 N -0.52 -22.36 3.55 -875.52 -3.11 -25.47 16 6 C 0.22 11.54 3.28 85.56 0.28 11.82 16 7 C -0.51 -29.69 8.61 25.60 0.22 -29.47 16 8 H 0.06 3.31 7.66 -2.91 -0.02 3.29 16 9 C 0.00 0.11 5.46 84.65 0.46 0.57 16 10 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 11 Si 0.96 45.83 29.54 68.60 2.03 47.86 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 15 C 0.09 3.37 1.71 44.92 0.08 3.45 16 16 H 0.09 2.89 5.92 -2.39 -0.01 2.88 16 17 C -0.15 -5.12 4.50 30.59 0.14 -4.99 16 18 C -0.11 -2.69 5.92 30.59 0.18 -2.51 16 19 C -0.12 -2.90 5.92 30.59 0.18 -2.72 16 20 C -0.10 -2.72 5.50 30.60 0.17 -2.55 16 21 C 0.10 3.66 2.65 44.92 0.12 3.78 16 22 H 0.00 -0.07 6.39 -2.39 -0.02 -0.09 16 23 N -0.83 -28.47 9.25 -168.66 -1.56 -30.03 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.05 1.56 6.13 -2.39 -0.01 1.55 16 29 H 0.06 2.59 7.32 -2.38 -0.02 2.57 16 30 H 0.04 1.56 6.56 -2.39 -0.02 1.55 16 31 H -0.04 -2.39 7.33 -2.39 -0.02 -2.40 16 32 H 0.01 0.33 5.94 -2.39 -0.01 0.32 16 33 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 34 H 0.06 1.92 6.71 -2.39 -0.02 1.90 16 35 H 0.03 1.44 6.66 -2.39 -0.02 1.43 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.33 10.01 9.04 -89.70 -0.81 9.20 16 43 H 0.35 13.90 8.30 -89.69 -0.74 13.16 16 Total: -1.00 -65.82 326.94 -0.56 -66.38 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: -0.56 Total: 28.57 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 3.95 Total: -15.03 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -4.39 Total: -112.32 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -1.59 Total: -15.46 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -65.82 -0.56 -66.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070845093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.535 kcal (2) G-P(sol) polarization free energy of solvation -65.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds