Wall clock time and date at job start Mon Mar 30 2020 04:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99874 * 2 1 4 4 C 1.53005 * 109.46987 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.46714 * 65.00200 * 4 3 2 6 6 C 1.46905 * 110.99615 * 189.99628 * 5 4 3 7 7 C 1.50697 * 109.46769 * 71.84053 * 6 5 4 8 8 H 1.07995 * 120.00264 * 5.05755 * 7 6 5 9 9 C 1.37878 * 119.99846 * 185.06729 * 7 6 5 10 10 N 1.31512 * 120.00203 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99847 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47011 * 90.00616 * 11 9 7 13 13 H 1.48503 * 109.46772 * 210.00326 * 11 9 7 14 14 H 1.48499 * 109.47232 * 330.00230 * 11 9 7 15 15 C 1.46901 * 110.99906 * 66.04925 * 5 4 3 16 16 H 1.09000 * 109.46897 * 312.93164 * 15 5 4 17 17 C 1.53000 * 109.47382 * 72.93394 * 15 5 4 18 18 C 1.53001 * 109.47043 * 179.97438 * 17 15 5 19 19 C 1.53005 * 109.47014 * 299.99874 * 18 17 15 20 20 C 1.53000 * 109.47112 * 60.00169 * 19 18 17 21 21 H 1.08997 * 109.47475 * 179.97438 * 20 19 18 22 22 N 1.46906 * 109.47185 * 59.99956 * 20 19 18 23 23 C 1.53001 * 109.47043 * 299.99813 * 20 19 18 24 24 H 1.08998 * 109.47041 * 300.00115 * 1 2 3 25 25 H 1.09002 * 109.46740 * 59.99594 * 1 2 3 26 26 H 1.08996 * 109.46910 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46924 * 60.00147 * 3 2 1 28 28 H 1.08998 * 109.47001 * 300.00281 * 3 2 1 29 29 H 1.08995 * 109.47093 * 305.00171 * 4 3 2 30 30 H 1.08993 * 109.46990 * 185.00204 * 4 3 2 31 31 H 1.08996 * 109.47261 * 191.83622 * 6 5 4 32 32 H 1.08997 * 109.47282 * 311.83607 * 6 5 4 33 33 H 0.97000 * 120.00090 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.47292 * 60.00012 * 17 15 5 35 35 H 1.08996 * 109.47015 * 299.99753 * 17 15 5 36 36 H 1.08997 * 109.47303 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.47013 * 59.99906 * 18 17 15 38 38 H 1.09000 * 109.47257 * 299.99883 * 19 18 17 39 39 H 1.08998 * 109.46704 * 179.97438 * 19 18 17 40 40 H 1.00893 * 111.00057 * 59.99248 * 22 20 19 41 41 H 1.00902 * 110.99966 * 183.95456 * 22 20 19 42 42 H 1.08999 * 109.46706 * 179.97438 * 23 20 19 43 43 H 1.09000 * 109.47013 * 300.00093 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9779 0.5624 -1.2543 6 6 5.4036 0.2134 -1.1949 7 6 5.5950 -0.9619 -0.2713 8 1 4.7364 -1.4568 0.1579 9 6 6.8662 -1.4053 0.0258 10 7 7.0333 -2.4307 0.8322 11 14 8.3513 -0.5495 -0.7170 12 1 8.7920 0.5468 0.1824 13 1 9.4556 -1.5287 -0.8819 14 1 7.9869 0.0133 -2.0420 15 6 3.6969 1.4349 -2.4023 16 1 2.6745 1.8066 -2.3344 17 6 4.6702 2.6154 -2.3959 18 6 4.3779 3.5238 -3.5919 19 6 4.5475 2.7298 -4.8888 20 6 3.5742 1.5493 -4.8951 21 1 3.6947 0.9840 -5.8192 22 7 2.1962 2.0503 -4.8043 23 6 3.8665 0.6410 -3.6992 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8508 0.5686 0.8426 30 1 3.9785 2.1765 0.0902 31 1 5.7557 -0.0476 -2.1928 32 1 5.9710 1.0657 -0.8209 33 1 7.9277 -2.7428 1.0409 34 1 5.6926 2.2437 -2.4638 35 1 4.5497 3.1807 -1.4719 36 1 5.0710 4.3650 -3.5872 37 1 3.3554 3.8955 -3.5245 38 1 5.5700 2.3581 -4.9562 39 1 4.3388 3.3769 -5.7408 40 1 1.9786 2.6533 -5.5834 41 1 1.5378 1.2883 -4.7418 42 1 3.1728 -0.1997 -3.7035 43 1 4.8889 0.2693 -3.7666 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086432838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:41 Heat of formation + Delta-G solvation = -71.129250 kcal Electronic energy + Delta-G solvation = -20850.342536 eV Core-core repulsion = 17929.187784 eV Total energy + Delta-G solvation = -2921.154751 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67425 -38.66060 -37.15552 -34.67338 -33.37628 -31.51080 -30.83433 -29.21073 -27.95179 -26.76915 -23.99656 -23.66026 -23.17763 -20.98777 -19.70387 -18.92563 -17.43121 -17.22670 -16.72544 -16.41889 -16.23796 -15.94423 -15.50631 -15.24526 -15.16207 -14.72142 -14.49790 -14.30269 -13.82487 -13.48271 -13.15555 -13.03151 -12.79494 -12.76197 -12.46404 -12.45818 -12.23904 -12.00157 -11.81810 -11.65812 -11.43997 -11.18275 -11.12509 -11.08822 -10.74388 -10.39075 -9.40682 -8.76157 -8.25495 -6.26848 1.31144 1.33093 1.44386 2.34315 3.04292 3.07546 3.26583 3.66712 3.91784 3.99613 4.02466 4.26873 4.37072 4.38132 4.42009 4.44783 4.56030 4.59321 4.63699 4.66129 4.72371 4.77964 4.83149 4.90717 4.94210 4.98717 5.08973 5.14721 5.21400 5.26673 5.34749 5.35222 5.46804 5.61335 5.65347 6.10446 6.34863 6.42527 6.59403 6.75385 6.80856 6.84369 7.36353 8.92075 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.014356 B = 0.008853 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.907360 B = 3162.025022 C = 4532.136685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.076 3.924 4 C 0.061 3.939 5 N -0.532 5.532 6 C 0.181 3.819 7 C -0.509 4.509 8 H 0.031 0.969 9 C 0.006 3.994 10 N -0.951 5.951 11 Si 0.944 3.056 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.251 1.251 15 C 0.096 3.904 16 H 0.096 0.904 17 C -0.151 4.151 18 C -0.095 4.095 19 C -0.111 4.111 20 C 0.102 3.898 21 H 0.040 0.960 22 N -0.840 5.840 23 C -0.102 4.102 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.025 0.975 32 H -0.016 1.016 33 H 0.265 0.735 34 H 0.039 0.961 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.349 0.651 41 H 0.344 0.656 42 H 0.052 0.948 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.593 14.168 -11.514 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C -0.001 4.001 4 C -0.068 4.068 5 N -0.255 5.255 6 C 0.054 3.946 7 C -0.547 4.547 8 H 0.050 0.950 9 C -0.191 4.191 10 N -0.592 5.592 11 Si 0.768 3.232 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.175 1.175 15 C -0.012 4.012 16 H 0.114 0.886 17 C -0.191 4.191 18 C -0.133 4.133 19 C -0.149 4.149 20 C -0.010 4.010 21 H 0.058 0.942 22 N -0.372 5.372 23 C -0.140 4.140 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.002 0.998 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.163 0.837 41 H 0.157 0.843 42 H 0.071 0.929 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.387 13.784 -10.812 20.366 hybrid contribution 1.131 -0.050 -0.421 1.208 sum -9.256 13.734 -11.232 20.011 Atomic orbital electron populations 1.22861 0.80374 1.03077 1.00627 1.88075 1.20675 1.28546 1.95390 1.22597 0.92351 0.84590 1.00548 1.21990 0.94315 0.97130 0.93326 1.61994 1.18385 1.42544 1.02543 1.19821 0.86090 0.93194 0.95530 1.21348 0.92500 1.13963 1.26912 0.95039 1.25842 1.02087 0.95714 0.95419 1.70069 1.23227 1.27823 1.38094 0.85763 0.78729 0.78620 0.80135 1.19285 1.20618 1.17484 1.21655 0.99458 0.90328 0.89721 0.88618 1.22212 0.99342 0.98180 0.99318 1.21270 1.02413 0.96755 0.92907 1.21565 0.98134 0.96742 0.98425 1.21173 0.90045 0.94587 0.95211 0.94219 1.58631 1.02336 1.24951 1.51317 1.21547 1.00426 0.97650 0.94380 0.93218 0.93025 0.89723 0.91881 0.91941 0.93131 0.93208 0.95687 0.99803 0.92606 0.94255 0.92768 0.92138 0.90238 0.92824 0.90136 0.83706 0.84264 0.92916 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.41 -15.15 10.65 -148.98 -1.59 -16.73 16 3 C 0.08 2.45 6.01 71.98 0.43 2.88 16 4 C 0.06 2.42 5.09 86.30 0.44 2.86 16 5 N -0.53 -22.94 4.33 -875.52 -3.79 -26.73 16 6 C 0.18 9.04 2.42 85.56 0.21 9.24 16 7 C -0.51 -31.05 8.94 25.60 0.23 -30.82 16 8 H 0.03 2.19 7.96 -2.91 -0.02 2.17 16 9 C 0.01 0.36 5.47 84.66 0.46 0.82 16 10 N -0.95 -61.86 13.96 21.45 0.30 -61.56 16 11 Si 0.94 45.87 27.37 68.60 1.88 47.75 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 14 H -0.25 -11.41 6.69 99.48 0.67 -10.74 16 15 C 0.10 3.24 1.90 44.92 0.09 3.32 16 16 H 0.10 3.01 5.39 -2.39 -0.01 3.00 16 17 C -0.15 -4.68 4.46 30.59 0.14 -4.54 16 18 C -0.10 -2.22 5.77 30.60 0.18 -2.05 16 19 C -0.11 -2.38 5.61 30.60 0.17 -2.21 16 20 C 0.10 2.32 3.57 44.91 0.16 2.48 16 21 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 22 N -0.84 -15.32 7.72 -168.67 -1.30 -16.62 16 23 C -0.10 -3.25 4.87 30.60 0.15 -3.10 16 24 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.79 6.13 -2.39 -0.01 1.78 16 29 H 0.05 2.44 7.19 -2.39 -0.02 2.42 16 30 H 0.05 1.81 6.55 -2.39 -0.02 1.79 16 31 H 0.03 1.27 5.51 -2.39 -0.01 1.25 16 32 H -0.02 -0.77 6.29 -2.39 -0.02 -0.79 16 33 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 34 H 0.04 1.39 6.66 -2.39 -0.02 1.37 16 35 H 0.05 1.66 6.70 -2.39 -0.02 1.65 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.75 7.60 -2.39 -0.02 1.73 16 38 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.35 4.69 9.04 -89.70 -0.81 3.88 16 41 H 0.34 6.07 8.99 -89.69 -0.81 5.26 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.04 1.61 6.40 -2.39 -0.02 1.60 16 Total: -1.00 -72.22 322.07 -1.26 -73.48 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -0.66 Total: 19.59 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 3.90 Total: -19.17 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -4.79 Total: -104.91 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -1.59 Total: -16.73 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.88 Total: 47.75 kcal Total: -72.22 -1.26 -73.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.354 kcal (2) G-P(sol) polarization free energy of solvation -72.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds