Wall clock time and date at job start Mon Mar 30 2020 04:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00356 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00478 * 3 2 1 6 6 H 1.48497 * 109.47329 * 150.00191 * 3 2 1 7 7 C 1.37875 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.47722 * 300.00831 * 9 7 2 11 11 O 1.42906 * 109.46805 * 60.00720 * 9 7 2 12 12 C 1.50706 * 109.47294 * 180.02562 * 9 7 2 13 13 C 1.38231 * 119.60616 * 124.72638 * 12 9 7 14 14 C 1.38608 * 119.17009 * 179.77628 * 13 12 9 15 15 C 1.38753 * 118.41436 * 0.49516 * 14 13 12 16 16 Br 1.89101 * 120.43082 * 179.77271 * 15 14 13 17 17 C 1.38281 * 119.14377 * 359.74585 * 15 14 13 18 18 N 1.31854 * 119.60571 * 305.00934 * 12 9 7 19 19 H 0.97006 * 119.99727 * 359.97438 * 1 2 3 20 20 H 0.96696 * 113.99911 * 59.99931 * 11 9 7 21 21 H 1.07997 * 120.41370 * 0.02562 * 13 12 9 22 22 H 1.08001 * 120.79306 * 180.26323 * 14 13 12 23 23 H 1.07999 * 119.62810 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 1 3.8746 -0.6799 -0.8910 11 8 3.9882 -0.5208 1.1658 12 6 4.0138 -2.6149 -0.0023 13 6 4.8866 -3.0299 -0.9907 14 6 5.3466 -4.3374 -0.9803 15 6 4.9013 -5.1861 0.0229 16 35 5.4873 -6.9828 0.0877 17 6 4.0238 -4.7009 0.9752 18 7 3.6113 -3.4489 0.9363 19 1 -0.4850 0.8401 0.0004 20 1 3.7032 -0.9246 1.9969 21 1 5.2091 -2.3428 -1.7589 22 1 6.0324 -4.6882 -1.7374 23 1 3.6718 -5.3549 1.7594 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130182138.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:42 Heat of formation + Delta-G solvation = -32.748484 kcal Electronic energy + Delta-G solvation = -11636.267012 eV Core-core repulsion = 9302.007014 eV Total energy + Delta-G solvation = -2334.259998 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.27847 -37.78173 -34.43290 -34.01929 -33.10528 -31.09226 -28.88694 -25.39567 -24.45865 -22.44230 -19.51996 -18.03869 -17.56705 -16.84534 -16.59587 -15.70329 -15.36803 -14.85212 -14.83163 -14.17518 -13.78683 -13.31143 -12.98120 -12.67894 -12.15180 -12.11400 -11.47869 -11.26080 -10.86149 -10.77909 -10.65142 -10.09388 -9.75967 -8.33000 -6.48316 -0.11362 0.24389 0.48580 1.42782 1.48625 1.77200 2.44604 2.67276 3.04938 3.40204 3.74776 3.80228 3.98297 4.03164 4.34612 4.66956 4.83970 4.92205 5.24972 5.42422 5.54148 6.10379 6.62592 7.01642 7.03045 7.28792 8.81382 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.066836 B = 0.005461 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.836810 B = 5126.110871 C = 5277.174865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.025 3.975 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.206 1.206 7 C -0.548 4.548 8 H 0.030 0.970 9 C 0.241 3.759 10 H 0.086 0.914 11 O -0.574 6.574 12 C 0.124 3.876 13 C -0.167 4.167 14 C -0.041 4.041 15 C -0.161 4.161 16 Br -0.023 7.023 17 C 0.118 3.882 18 N -0.490 5.490 19 H 0.268 0.732 20 H 0.371 0.629 21 H 0.165 0.835 22 H 0.176 0.824 23 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.893 -12.608 -1.451 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.174 4.174 3 Si 0.765 3.235 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.127 1.127 7 C -0.586 4.586 8 H 0.048 0.952 9 C 0.183 3.817 10 H 0.103 0.897 11 O -0.380 6.380 12 C -0.013 4.013 13 C -0.187 4.187 14 C -0.068 4.068 15 C -0.242 4.242 16 Br 0.062 6.938 17 C -0.041 4.041 18 N -0.200 5.200 19 H 0.076 0.924 20 H 0.219 0.781 21 H 0.183 0.817 22 H 0.193 0.807 23 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 14.670 -12.487 -1.228 19.304 hybrid contribution -0.404 0.318 -0.217 0.558 sum 14.267 -12.168 -1.445 18.807 Atomic orbital electron populations 1.70087 1.08624 1.28484 1.50614 1.25917 0.95379 1.03728 0.92385 0.85943 0.81770 0.76953 0.78851 1.20151 1.22427 1.12742 1.21504 0.91139 0.93204 1.52705 0.95166 1.18749 0.91796 0.84099 0.87103 0.89656 1.86600 1.77602 1.56931 1.16889 1.22451 0.91019 0.97426 0.90374 1.22326 0.98442 0.97546 1.00397 1.21863 0.96831 0.91860 0.96266 1.23026 1.05187 0.94086 1.01933 1.96679 1.88698 1.09788 1.98681 1.23192 0.92149 0.91889 0.96905 1.67601 1.22703 1.03835 1.25841 0.92358 0.78136 0.81733 0.80705 0.80875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.52 13.96 21.45 0.30 -58.22 14 2 C 0.03 1.46 5.47 84.65 0.46 1.93 14 3 Si 0.94 43.93 26.99 68.60 1.85 45.78 14 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 14 5 H -0.30 -13.99 7.11 99.48 0.71 -13.29 14 6 H -0.21 -9.09 5.31 99.48 0.53 -8.56 14 7 C -0.55 -30.95 9.14 25.60 0.23 -30.71 14 8 H 0.03 1.94 7.92 -2.91 -0.02 1.92 14 9 C 0.24 10.98 2.64 29.10 0.08 11.05 14 10 H 0.09 3.65 7.30 -2.39 -0.02 3.63 14 11 O -0.57 -25.39 10.13 -148.98 -1.51 -26.90 14 12 C 0.12 4.98 5.73 42.56 0.24 5.22 14 13 C -0.17 -5.14 9.71 22.36 0.22 -4.92 14 14 C -0.04 -1.05 9.94 22.48 0.22 -0.82 14 15 C -0.16 -4.36 6.25 22.40 0.14 -4.22 14 16 Br -0.02 -0.48 33.74 -20.37 -0.69 -1.17 14 17 C 0.12 3.81 10.95 84.70 0.93 4.74 14 18 N -0.49 -19.79 9.94 -183.80 -1.83 -21.62 14 19 H 0.27 15.60 8.31 -92.70 -0.77 14.83 14 20 H 0.37 15.62 9.02 -74.06 -0.67 14.95 14 21 H 0.17 4.14 7.95 -2.91 -0.02 4.12 14 22 H 0.18 3.11 8.06 -2.91 -0.02 3.09 14 23 H 0.17 4.72 8.06 -2.91 -0.02 4.70 14 Total: -1.00 -67.15 230.71 1.04 -66.10 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.39 Total: 13.77 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 2.53 Total: -17.75 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -1.53 Total: -79.84 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -1.51 Total: -26.90 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.85 Total: 45.78 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -0.69 Total: -1.17 kcal Total: -67.15 1.04 -66.10 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130182138.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.355 kcal (2) G-P(sol) polarization free energy of solvation -67.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds