Wall clock time and date at job start Mon Mar 30 2020 04:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99500 * 2 1 4 4 H 1.48495 * 109.47384 * 270.00087 * 3 2 1 5 5 H 1.48505 * 109.47417 * 30.00165 * 3 2 1 6 6 H 1.48503 * 109.47272 * 150.00126 * 3 2 1 7 7 C 1.37873 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99854 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99806 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.47208 * 300.00080 * 9 7 2 11 11 O 1.42901 * 109.46790 * 60.00254 * 9 7 2 12 12 C 1.50699 * 109.47114 * 180.02562 * 9 7 2 13 13 C 1.38235 * 120.41124 * 280.00185 * 12 9 7 14 14 N 1.31859 * 120.78146 * 180.02562 * 13 12 9 15 15 C 1.31869 * 121.73655 * 359.97438 * 14 13 12 16 16 C 1.38278 * 120.75447 * 359.97438 * 15 14 13 17 17 Br 1.89095 * 120.42875 * 179.97438 * 16 15 14 18 18 C 1.38612 * 120.41424 * 100.02112 * 12 9 7 19 19 H 0.96996 * 120.00152 * 359.97438 * 1 2 3 20 20 H 0.96705 * 114.00135 * 60.00055 * 11 9 7 21 21 H 1.08000 * 119.61195 * 359.74647 * 13 12 9 22 22 H 1.08007 * 119.62350 * 179.97438 * 15 14 13 23 23 H 1.07997 * 120.79424 * 0.02562 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 1 3.8746 -0.6799 -0.8911 11 8 3.9883 -0.5205 1.1657 12 6 4.0141 -2.6147 -0.0023 13 6 4.0526 -3.3442 1.1713 14 7 4.4913 -4.5877 1.1787 15 6 4.9074 -5.1830 0.0782 16 6 4.8972 -4.5166 -1.1334 17 35 5.4967 -5.3790 -2.7058 18 6 4.4437 -3.2061 -1.1800 19 1 -0.4850 0.8400 0.0004 20 1 3.7033 -0.9243 1.9969 21 1 3.7237 -2.8889 2.0937 22 1 5.2603 -6.2028 0.1236 23 1 4.4255 -2.6601 -2.1115 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135136834.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:45 Heat of formation + Delta-G solvation = -13.391481 kcal Electronic energy + Delta-G solvation = -11671.554775 eV Core-core repulsion = 9338.134160 eV Total energy + Delta-G solvation = -2333.420615 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.96067 -36.33425 -32.89011 -32.42449 -31.75903 -29.26477 -27.41228 -23.71122 -23.17258 -20.74955 -17.67272 -16.91715 -16.26692 -15.33280 -14.92122 -14.04568 -13.79205 -13.28189 -12.98082 -12.86322 -12.18565 -11.82663 -11.29018 -11.11378 -10.79166 -10.51485 -10.35562 -9.52196 -9.33201 -9.06073 -8.82087 -8.62244 -8.36037 -6.27745 -4.42606 1.18908 1.52998 1.66037 3.28726 3.39347 3.62560 3.99978 4.39083 4.67210 4.99491 5.04676 5.16596 5.31409 5.61328 5.69193 5.90494 6.15312 6.34565 6.83744 7.04458 7.30757 8.08425 8.14526 8.61098 8.79285 9.32944 10.81886 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.038624 B = 0.006470 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.771011 B = 4326.731552 C = 4604.974001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.088 3.912 3 Si 0.869 3.131 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.217 1.217 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.230 3.770 10 H 0.071 0.929 11 O -0.573 6.573 12 C -0.104 4.104 13 C 0.117 3.883 14 N -0.477 5.477 15 C 0.106 3.894 16 C -0.143 4.143 17 Br -0.053 7.053 18 C -0.050 4.050 19 H 0.268 0.732 20 H 0.358 0.642 21 H 0.161 0.839 22 H 0.156 0.844 23 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.098 -8.942 -3.405 14.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.118 4.118 3 Si 0.695 3.305 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.139 1.139 7 C -0.601 4.601 8 H 0.093 0.907 9 C 0.172 3.828 10 H 0.088 0.912 11 O -0.380 6.380 12 C -0.107 4.107 13 C -0.040 4.040 14 N -0.185 5.185 15 C -0.053 4.053 16 C -0.224 4.224 17 Br 0.032 6.968 18 C -0.077 4.077 19 H 0.078 0.922 20 H 0.206 0.794 21 H 0.178 0.822 22 H 0.173 0.827 23 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.455 -9.244 -3.630 15.161 hybrid contribution -0.352 1.042 -0.284 1.136 sum 11.103 -8.202 -3.915 14.348 Atomic orbital electron populations 1.69935 1.06760 1.27820 1.47390 1.24986 0.94666 0.99912 0.92224 0.87044 0.83033 0.81758 0.78661 1.21110 1.21850 1.13918 1.21310 0.88380 0.95172 1.55271 0.90693 1.18835 0.94285 0.82976 0.86664 0.91152 1.86767 1.77878 1.56991 1.16349 1.22054 0.94762 1.00901 0.92994 1.22663 0.93726 0.89113 0.98504 1.67777 1.10442 1.11105 1.29216 1.22606 0.96608 0.99631 0.86495 1.22851 1.08591 0.97500 0.93485 1.96646 1.88228 1.78892 1.33078 1.21442 0.94272 0.92510 0.99510 0.92213 0.79416 0.82214 0.82663 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.83 13.96 55.43 0.77 -25.05 14 2 C 0.09 2.41 5.47 -17.82 -0.10 2.31 14 3 Si 0.87 20.52 26.99 -169.99 -4.59 15.93 14 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 14 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 14 6 H -0.22 -4.96 5.31 56.52 0.30 -4.66 14 7 C -0.56 -14.77 9.32 -34.44 -0.32 -15.09 14 8 H 0.07 2.17 7.98 -52.49 -0.42 1.75 14 9 C 0.23 5.02 2.57 -29.03 -0.07 4.95 14 10 H 0.07 1.54 7.46 -51.93 -0.39 1.16 14 11 O -0.57 -11.97 10.00 -35.23 -0.35 -12.32 14 12 C -0.10 -1.99 4.92 -104.49 -0.51 -2.51 14 13 C 0.12 2.10 10.49 -17.54 -0.18 1.91 14 14 N -0.48 -8.27 10.36 -13.23 -0.14 -8.40 14 15 C 0.11 1.64 10.94 -17.52 -0.19 1.45 14 16 C -0.14 -2.24 6.25 -39.37 -0.25 -2.49 14 17 Br -0.05 -0.69 33.74 -68.01 -2.29 -2.98 14 18 C -0.05 -0.87 9.59 -39.25 -0.38 -1.25 14 19 H 0.27 7.37 8.31 -40.82 -0.34 7.03 14 20 H 0.36 6.41 7.52 45.56 0.34 6.75 14 21 H 0.16 2.59 6.80 -52.49 -0.36 2.23 14 22 H 0.16 1.96 8.06 -52.48 -0.42 1.54 14 23 H 0.14 2.29 8.06 -52.49 -0.42 1.86 14 LS Contribution 228.31 15.07 3.44 3.44 Total: -1.00 -29.26 228.31 -6.07 -35.33 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -0.90 Total: 4.77 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -2.01 Total: -10.72 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.64 Total: -33.46 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.35 Total: -12.32 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.59 Total: 15.93 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -2.29 Total: -2.98 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.26 -6.07 -35.33 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135136834.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.938 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds