Wall clock time and date at job start Mon Mar 30 2020 04:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 O 1.42899 * 109.47038 * 299.72024 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38228 * 120.41293 * 84.72105 * 12 9 7 14 14 N 1.31854 * 120.77994 * 179.74990 * 13 12 9 15 15 C 1.31878 * 121.73795 * 0.53462 * 14 13 12 16 16 C 1.38269 * 120.75192 * 359.73077 * 15 14 13 17 17 Br 1.89102 * 120.43136 * 179.97438 * 16 15 14 18 18 C 1.38612 * 120.40907 * 264.99582 * 12 9 7 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 0.96699 * 113.99712 * 300.00343 * 11 9 7 21 21 H 1.07994 * 119.61036 * 0.02562 * 13 12 9 22 22 H 1.07999 * 119.62411 * 179.70592 * 15 14 13 23 23 H 1.07994 * 120.79788 * 0.02562 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 8 0.4293 -2.5801 1.1610 12 6 2.2302 -3.6447 -0.0104 13 6 2.7682 -4.1105 1.1746 14 7 3.6218 -5.1154 1.1791 15 6 4.0033 -5.7065 0.0637 16 6 3.5117 -5.2916 -1.1602 17 35 4.0655 -6.1453 -2.7542 18 6 2.6070 -4.2404 -1.2039 19 1 -0.4850 0.8401 -0.0004 20 1 0.9214 -2.5384 1.9924 21 1 2.4825 -3.6489 2.1082 22 1 4.7081 -6.5237 0.1066 23 1 2.2066 -3.8942 -2.1452 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135136851.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:46 Heat of formation + Delta-G solvation = -19.522544 kcal Electronic energy + Delta-G solvation = -11629.670806 eV Core-core repulsion = 9295.984327 eV Total energy + Delta-G solvation = -2333.686478 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.85240 -35.95128 -32.81081 -32.31335 -31.58714 -29.17493 -26.97229 -23.77798 -23.08351 -20.81761 -17.28837 -16.83955 -16.15278 -15.20205 -14.72712 -14.01302 -13.79106 -13.08276 -12.80276 -12.76253 -11.85322 -11.44232 -11.21503 -11.03575 -10.99262 -10.36184 -10.30250 -9.81975 -9.29479 -9.00318 -8.77892 -8.53900 -8.24918 -6.17863 -4.39033 1.26660 1.62471 1.72045 3.21292 3.26860 3.29117 4.06712 4.29553 4.74330 5.06444 5.12946 5.26579 5.42335 5.72298 6.06364 6.08147 6.27441 6.53573 6.94708 7.42651 7.65231 7.89764 8.19914 8.62744 9.11200 9.37422 10.85403 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.033981 B = 0.006409 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.802212 B = 4367.607558 C = 4719.624149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.082 3.918 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.571 4.571 8 H 0.058 0.942 9 C 0.264 3.736 10 H 0.073 0.927 11 O -0.557 6.557 12 C -0.109 4.109 13 C 0.110 3.890 14 N -0.478 5.478 15 C 0.101 3.899 16 C -0.142 4.142 17 Br -0.055 7.055 18 C -0.051 4.051 19 H 0.265 0.735 20 H 0.348 0.652 21 H 0.159 0.841 22 H 0.154 0.846 23 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.950 -10.488 -3.723 13.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.125 4.125 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.609 4.609 8 H 0.076 0.924 9 C 0.206 3.794 10 H 0.091 0.909 11 O -0.360 6.360 12 C -0.112 4.112 13 C -0.047 4.047 14 N -0.186 5.186 15 C -0.058 4.058 16 C -0.224 4.224 17 Br 0.029 6.971 18 C -0.078 4.078 19 H 0.075 0.925 20 H 0.193 0.807 21 H 0.176 0.824 22 H 0.172 0.828 23 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.831 -11.036 -3.968 13.572 hybrid contribution 0.552 1.486 -0.203 1.598 sum 7.384 -9.550 -4.171 12.772 Atomic orbital electron populations 1.70054 1.05968 1.27097 1.45854 1.25037 0.94780 0.99278 0.93404 0.86621 0.79676 0.82557 0.78937 1.20006 1.20981 1.19921 1.21433 0.93174 0.90238 1.56038 0.92357 1.18487 0.86487 0.87306 0.87144 0.90907 1.86650 1.37875 1.96153 1.15316 1.22531 0.98443 0.97588 0.92614 1.22663 0.91648 0.91703 0.98661 1.67755 1.12509 1.08936 1.29450 1.22558 0.98169 0.98830 0.86292 1.22861 1.04696 1.01894 0.92920 1.96632 1.90152 1.78870 1.31475 1.21445 0.94260 0.92348 0.99788 0.92526 0.80730 0.82353 0.82827 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.95 12.84 55.43 0.71 -23.24 14 2 C 0.08 2.19 5.40 -17.82 -0.10 2.09 14 3 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 14 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 14 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 14 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 14 7 C -0.57 -14.79 8.74 -34.44 -0.30 -15.10 14 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 14 9 C 0.26 6.28 3.08 -29.03 -0.09 6.19 14 10 H 0.07 1.87 8.06 -51.93 -0.42 1.46 14 11 O -0.56 -13.36 12.55 -35.23 -0.44 -13.80 14 12 C -0.11 -2.19 4.95 -104.49 -0.52 -2.70 14 13 C 0.11 2.05 10.50 -17.55 -0.18 1.86 14 14 N -0.48 -8.51 10.36 -13.23 -0.14 -8.65 14 15 C 0.10 1.61 10.94 -17.52 -0.19 1.42 14 16 C -0.14 -2.31 6.25 -39.38 -0.25 -2.56 14 17 Br -0.06 -0.75 33.74 -68.01 -2.29 -3.04 14 18 C -0.05 -0.93 9.61 -39.25 -0.38 -1.31 14 19 H 0.26 7.05 8.31 -40.82 -0.34 6.71 14 20 H 0.35 7.17 7.42 45.56 0.34 7.51 14 21 H 0.16 2.68 6.64 -52.49 -0.35 2.33 14 22 H 0.15 2.01 8.06 -52.49 -0.42 1.59 14 23 H 0.14 2.44 8.06 -52.49 -0.42 2.02 14 LS Contribution 234.10 15.07 3.53 3.53 Total: -1.00 -28.35 234.10 -6.47 -34.82 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -0.82 Total: 5.13 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.00 Total: -10.10 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.57 Total: -31.89 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.44 Total: -13.80 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -2.29 Total: -3.04 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.35 -6.47 -34.82 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135136851.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.301 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds