Wall clock time and date at job start Mon Mar 30 2020 04:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86795 * 120.00083 * 2 1 4 4 H 1.48504 * 109.47167 * 270.00347 * 3 2 1 5 5 H 1.48500 * 109.47155 * 30.00391 * 3 2 1 6 6 H 1.48507 * 109.47022 * 150.00577 * 3 2 1 7 7 C 1.38947 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00535 * 359.97438 * 7 2 1 9 9 N 1.37107 * 119.99736 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99925 * 179.97438 * 9 7 2 11 11 O 1.21299 * 120.00050 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00288 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47489 * 179.97438 * 12 10 9 14 14 C 1.36027 * 120.42219 * 89.99786 * 13 12 10 15 15 C 1.35496 * 120.13952 * 179.97438 * 14 13 12 16 16 N 1.33104 * 120.98864 * 359.97438 * 15 14 13 17 17 C 1.31060 * 120.84747 * 0.02562 * 16 15 14 18 18 Cl 1.73605 * 120.08861 * 179.97438 * 17 16 15 19 19 C 1.35057 * 120.42299 * 269.98076 * 13 12 10 20 20 O 1.21970 * 120.48009 * 359.97438 * 19 13 12 21 21 H 0.97000 * 120.00103 * 359.97438 * 1 2 3 22 22 H 0.96994 * 120.00005 * 359.97438 * 9 7 2 23 23 H 1.09003 * 109.46637 * 59.99947 * 12 10 9 24 24 H 1.08999 * 109.46958 * 300.00496 * 12 10 9 25 25 H 1.08003 * 119.93257 * 0.02562 * 14 13 12 26 26 H 1.07998 * 119.51035 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4211 -0.0011 12 6 5.5607 -2.3707 -0.0022 13 7 6.0490 -3.7519 -0.0014 14 6 6.2776 -4.4024 -1.1740 15 6 6.7298 -5.6797 -1.1665 16 7 6.9582 -6.3191 -0.0217 17 6 6.7511 -5.7295 1.1303 18 17 7.0550 -6.5822 2.6116 19 6 6.2782 -4.3955 1.1636 20 8 6.0821 -3.8351 2.2290 21 1 -0.4850 0.8400 0.0004 22 1 3.8648 -0.3634 -0.0014 23 1 5.9247 -1.8565 0.8873 24 1 5.9233 -1.8572 -0.8927 25 1 6.0992 -3.8994 -2.1129 26 1 6.9083 -6.1863 -2.1034 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165083858.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:33 Heat of formation + Delta-G solvation = -45.158159 kcal Electronic energy + Delta-G solvation = -16501.715310 eV Core-core repulsion = 13413.637625 eV Total energy + Delta-G solvation = -3088.077685 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.035 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.94918 -40.30261 -38.80269 -37.95036 -36.60909 -35.99992 -33.89386 -31.41054 -30.37214 -27.06988 -25.61770 -24.67923 -21.64871 -20.69791 -19.86439 -18.85023 -18.34454 -17.84633 -17.09096 -16.63961 -16.21713 -16.04613 -15.49503 -15.20824 -14.71992 -14.51764 -14.29698 -14.08145 -13.38189 -13.25862 -12.92662 -12.56523 -12.48114 -12.34430 -12.10890 -11.95099 -11.59655 -10.67712 -10.64767 -10.36307 -9.17251 -8.47961 -6.11808 -0.69784 0.45610 0.55953 1.29757 1.32255 1.34572 1.44974 1.74003 2.19819 2.31946 2.76775 3.02892 3.09568 3.49991 3.65071 3.91520 3.97192 4.13086 4.17465 4.61385 5.13533 5.39062 5.44296 5.83171 6.37469 6.44312 6.50316 6.75330 7.23063 7.75445 8.68954 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.038392 B = 0.005169 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.140878 B = 5415.343636 C = 5593.629180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.010 4.010 3 Si 0.966 3.034 4 H -0.247 1.247 5 H -0.279 1.279 6 H -0.229 1.229 7 C -0.334 4.334 8 H 0.054 0.946 9 N -0.571 5.571 10 C 0.431 3.569 11 O -0.621 6.621 12 C 0.083 3.917 13 N -0.454 5.454 14 C 0.139 3.861 15 C -0.048 4.048 16 N -0.384 5.384 17 C 0.050 3.950 18 Cl -0.002 7.002 19 C 0.481 3.519 20 O -0.555 6.555 21 H 0.282 0.718 22 H 0.395 0.605 23 H 0.133 0.867 24 H 0.188 0.812 25 H 0.232 0.768 26 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.813 -2.244 -6.157 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.210 4.210 3 Si 0.785 3.215 4 H -0.170 1.170 5 H -0.204 1.204 6 H -0.153 1.153 7 C -0.463 4.463 8 H 0.072 0.928 9 N -0.212 5.212 10 C 0.218 3.782 11 O -0.507 6.507 12 C -0.041 4.041 13 N -0.164 5.164 14 C 0.007 3.993 15 C -0.191 4.191 16 N -0.102 5.102 17 C -0.139 4.139 18 Cl 0.026 6.974 19 C 0.278 3.722 20 O -0.434 6.434 21 H 0.091 0.909 22 H 0.232 0.768 23 H 0.151 0.849 24 H 0.205 0.795 25 H 0.249 0.751 26 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 18.365 -3.261 -5.492 19.444 hybrid contribution -0.797 1.341 0.554 1.656 sum 17.568 -1.920 -4.938 18.349 Atomic orbital electron populations 1.69799 1.08362 1.29637 1.48950 1.26189 0.96469 1.02973 0.95403 0.85365 0.79495 0.76223 0.80455 1.17038 1.20386 1.15252 1.18964 0.81169 0.95017 1.51194 0.92817 1.41851 1.05948 1.07346 1.66011 1.20824 0.90495 0.83956 0.82941 1.90620 1.71042 1.32831 1.56222 1.22120 0.90600 0.80773 1.10581 1.45475 1.49062 1.14812 1.07055 1.24226 0.89044 0.94688 0.91350 1.22712 1.07948 0.91992 0.96464 1.67039 1.07601 1.37657 0.97888 1.23084 1.09752 0.90661 0.90447 1.98370 1.93890 1.76007 1.29102 1.17888 0.81578 0.88225 0.84503 1.90960 1.54952 1.68551 1.28970 0.90858 0.76830 0.84945 0.79471 0.75126 0.75498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.16 13.96 21.66 0.30 -53.86 15 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 15 3 Si 0.97 35.94 27.73 68.60 1.90 37.84 15 4 H -0.25 -8.35 7.11 99.48 0.71 -7.64 15 5 H -0.28 -10.60 7.11 99.48 0.71 -9.90 15 6 H -0.23 -7.05 6.52 99.48 0.65 -6.40 15 7 C -0.33 -18.70 10.16 84.04 0.85 -17.85 15 8 H 0.05 3.65 7.39 -2.91 -0.02 3.63 15 9 N -0.57 -24.66 5.09 -306.97 -1.56 -26.23 15 10 C 0.43 17.72 7.85 87.66 0.69 18.41 15 11 O -0.62 -32.86 16.01 -3.09 -0.05 -32.91 15 12 C 0.08 2.10 5.90 85.63 0.51 2.61 15 13 N -0.45 -12.39 2.10 -653.12 -1.37 -13.76 15 14 C 0.14 2.46 10.37 83.41 0.86 3.32 15 15 C -0.05 -0.87 11.08 83.87 0.93 0.05 15 16 N -0.38 -10.35 10.42 -185.95 -1.94 -12.29 15 17 C 0.05 1.62 7.37 85.63 0.63 2.25 15 18 Cl 0.00 -0.05 28.75 -2.72 -0.08 -0.13 15 19 C 0.48 16.94 7.46 85.02 0.63 17.57 15 20 O -0.55 -23.48 16.30 -5.22 -0.09 -23.56 15 21 H 0.28 14.98 8.31 -92.71 -0.77 14.21 15 22 H 0.40 13.45 5.76 -92.71 -0.53 12.91 15 23 H 0.13 3.25 7.47 -2.39 -0.02 3.23 15 24 H 0.19 2.15 8.05 -2.39 -0.02 2.13 15 25 H 0.23 1.50 8.06 -2.91 -0.02 1.48 15 26 H 0.23 1.91 8.06 -2.91 -0.02 1.89 15 Total: -1.00 -86.43 259.87 3.35 -83.08 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.65 Total: 15.53 kcal Atomic # 6 Polarization: 20.71 SS G_CDS: 5.57 Total: 26.29 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -4.57 Total: -106.14 kcal Atomic # 8 Polarization: -56.34 SS G_CDS: -0.13 Total: -56.47 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 1.90 Total: 37.84 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.08 Total: -0.13 kcal Total: -86.43 3.35 -83.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165083858.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.926 kcal (2) G-P(sol) polarization free energy of solvation -86.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds