Wall clock time and date at job start Mon Mar 30 2020 04:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99841 * 2 1 4 4 H 1.09005 * 109.52586 * 330.00030 * 3 2 1 5 5 C 1.53112 * 109.52458 * 90.12983 * 3 2 1 6 6 C 1.53034 * 109.28169 * 62.31041 * 5 3 2 7 7 N 1.46848 * 109.52259 * 59.18171 * 6 5 3 8 8 C 1.46896 * 111.00468 * 174.16296 * 7 6 5 9 9 C 1.53002 * 109.46819 * 68.27015 * 8 7 6 10 10 C 1.53001 * 109.46543 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46728 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00269 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99804 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99866 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99718 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47599 * 59.99715 * 15 13 11 17 17 H 1.48502 * 109.47020 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47277 * 299.99362 * 15 13 11 19 19 C 1.46848 * 111.19633 * 298.26115 * 7 6 5 20 20 H 1.09006 * 109.46429 * 301.73402 * 19 7 6 21 21 C 1.53000 * 109.46278 * 181.75731 * 19 7 6 22 22 N 1.46905 * 109.47360 * 176.51988 * 21 19 7 23 23 C 1.53050 * 109.57738 * 61.70672 * 19 7 6 24 24 H 1.09001 * 109.46986 * 299.99806 * 1 2 3 25 25 H 1.08996 * 109.47331 * 60.00031 * 1 2 3 26 26 H 1.09003 * 109.46951 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.50470 * 182.25577 * 5 3 2 28 28 H 1.09005 * 109.50473 * 302.33229 * 5 3 2 29 29 H 1.08998 * 109.46330 * 179.19515 * 6 5 3 30 30 H 1.08994 * 109.46581 * 299.16874 * 6 5 3 31 31 H 1.09001 * 109.47588 * 188.27467 * 8 7 6 32 32 H 1.09000 * 109.46594 * 308.27675 * 8 7 6 33 33 H 1.08993 * 109.47282 * 299.99922 * 9 8 7 34 34 H 1.08992 * 109.47143 * 60.00628 * 9 8 7 35 35 H 1.08996 * 109.47494 * 299.99720 * 10 9 8 36 36 H 1.08995 * 109.47665 * 60.00347 * 10 9 8 37 37 H 0.97000 * 119.99479 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.47180 * 296.51955 * 21 19 7 39 39 H 1.08995 * 109.46991 * 56.51852 * 21 19 7 40 40 H 1.00897 * 111.00068 * 184.80889 * 22 21 19 41 41 H 1.00905 * 110.99796 * 308.76175 * 22 21 19 42 42 H 1.09000 * 109.55298 * 180.94119 * 23 19 7 43 43 H 1.08998 * 109.44943 * 60.82910 * 23 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3456 2.0001 -0.5137 5 6 2.2213 1.7716 1.4431 6 6 3.2027 0.8271 2.1408 7 7 4.4802 0.8243 1.4166 8 6 5.4908 0.0363 2.1347 9 6 5.1040 -1.4435 2.0983 10 6 6.1563 -2.2641 2.8468 11 6 5.7756 -3.7218 2.8105 12 1 4.8737 -4.0320 2.3039 13 6 6.5790 -4.6596 3.4242 14 7 7.6776 -4.2819 4.0406 15 14 6.1075 -6.4665 3.3785 16 1 6.0355 -6.9239 1.9677 17 1 7.1281 -7.2629 4.1062 18 1 4.7838 -6.6492 4.0264 19 6 4.3104 0.3353 0.0424 20 1 3.8921 -0.6711 0.0640 21 6 5.6692 0.3075 -0.6603 22 7 5.5129 -0.2597 -2.0065 23 6 3.3615 1.2639 -0.7189 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 2.6274 2.7831 1.4431 28 1 1.2681 1.7622 1.9717 29 1 3.3662 1.1645 3.1642 30 1 2.7898 -0.1816 2.1527 31 1 6.4619 0.1699 1.6580 32 1 5.5450 0.3724 3.1702 33 1 4.1330 -1.5771 2.5751 34 1 5.0497 -1.7796 1.0629 35 1 7.1275 -2.1307 2.3704 36 1 6.2103 -1.9280 3.8823 37 1 8.2425 -4.9416 4.4726 38 1 6.0596 1.3223 -0.7368 39 1 6.3628 -0.3063 -0.0858 40 1 6.4074 -0.3615 -2.4620 41 1 5.0218 -1.1405 -1.9729 42 1 3.2226 0.8913 -1.7338 43 1 3.7861 2.2672 -0.7539 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165660999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:59 Heat of formation + Delta-G solvation = -80.930290 kcal Electronic energy + Delta-G solvation = -20439.141376 eV Core-core repulsion = 17517.561619 eV Total energy + Delta-G solvation = -2921.579756 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.96382 -38.49203 -36.04433 -35.33432 -34.21719 -32.04885 -31.27493 -28.34298 -27.37289 -26.14034 -25.45300 -23.59959 -22.69228 -21.71159 -20.01677 -18.54892 -17.48932 -16.96260 -16.65627 -16.61545 -16.51238 -16.12493 -15.82435 -15.37918 -14.81839 -14.71854 -14.41051 -14.01885 -13.81714 -13.52652 -13.30893 -13.02900 -12.99449 -12.80509 -12.61339 -12.51361 -12.48633 -12.10414 -11.98408 -11.69572 -11.45141 -11.34883 -11.29421 -11.05005 -10.59187 -10.39169 -9.58117 -9.14216 -8.23426 -6.35770 1.35138 1.38041 1.46386 2.36734 2.85898 3.03394 3.08183 3.72462 3.82336 3.92112 3.99983 4.10060 4.27431 4.30072 4.40164 4.47761 4.52245 4.54431 4.59046 4.65671 4.75160 4.82582 4.84661 4.87684 4.93080 4.98709 5.03564 5.12715 5.17224 5.21530 5.26849 5.41407 5.46655 5.66583 5.79717 6.07984 6.15522 6.22808 6.27146 6.39327 6.56509 6.79630 7.33350 8.87193 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.020977 B = 0.005253 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.464248 B = 5329.307343 C = 5642.175310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.082 3.918 4 H 0.082 0.918 5 C -0.129 4.129 6 C 0.057 3.943 7 N -0.524 5.524 8 C 0.060 3.940 9 C -0.119 4.119 10 C 0.032 3.968 11 C -0.546 4.546 12 H 0.051 0.949 13 C 0.003 3.997 14 N -0.930 5.930 15 Si 0.962 3.038 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.269 1.269 19 C 0.092 3.908 20 H 0.025 0.975 21 C 0.067 3.933 22 N -0.843 5.843 23 C -0.090 4.090 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.019 0.981 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.042 0.958 35 H -0.008 1.008 36 H -0.008 1.008 37 H 0.265 0.735 38 H 0.082 0.918 39 H 0.015 0.985 40 H 0.350 0.650 41 H 0.339 0.661 42 H 0.078 0.922 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.918 13.197 -9.860 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.024 3.976 4 H 0.100 0.900 5 C -0.167 4.167 6 C -0.071 4.071 7 N -0.248 5.248 8 C -0.068 4.068 9 C -0.158 4.158 10 C -0.006 4.006 11 C -0.584 4.584 12 H 0.069 0.931 13 C -0.195 4.195 14 N -0.570 5.570 15 Si 0.786 3.214 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.193 1.193 19 C -0.016 4.016 20 H 0.043 0.957 21 C -0.064 4.064 22 N -0.373 5.373 23 C -0.128 4.128 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.037 0.963 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.010 0.990 36 H 0.010 0.990 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.034 0.966 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.097 0.903 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.924 14.142 -9.947 21.003 hybrid contribution 0.284 -2.688 0.859 2.836 sum -11.640 11.454 -9.088 18.689 Atomic orbital electron populations 1.22898 0.80237 1.03088 1.00743 1.87967 1.20851 1.28902 1.95144 1.22349 0.95095 0.84459 0.95670 0.89966 1.22051 0.98837 0.99864 0.95970 1.21992 0.89321 0.98261 0.97571 1.62311 1.08340 1.52175 1.01984 1.22179 0.95712 0.90254 0.98675 1.21922 0.98541 0.96281 0.99095 1.18892 0.93669 0.93949 0.94092 1.21617 1.08276 0.93849 1.34698 0.93083 1.25946 0.94811 1.04047 0.94689 1.70080 1.14581 1.35873 1.36456 0.85550 0.78221 0.78919 0.78679 1.19257 1.20332 1.19349 1.21438 0.95297 0.96795 0.88105 0.95719 1.21814 0.95494 1.00130 0.88941 1.58762 1.26404 1.33174 1.18932 1.21593 0.92330 1.00271 0.98575 0.93393 0.92669 0.89853 0.89092 0.90449 0.90893 0.96257 0.90879 0.91312 0.94343 0.93904 0.98968 0.99009 0.92639 0.89977 0.96644 0.83726 0.84917 0.90307 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.82 113.37 1.23 1.72 16 2 O -0.41 -10.69 9.21 -148.98 -1.37 -12.07 16 3 C 0.08 1.78 2.93 30.67 0.09 1.87 16 4 H 0.08 1.39 7.79 -2.38 -0.02 1.37 16 5 C -0.13 -2.79 5.79 30.64 0.18 -2.61 16 6 C 0.06 1.63 4.96 86.32 0.43 2.06 16 7 N -0.52 -16.02 4.69 -871.09 -4.09 -20.11 16 8 C 0.06 2.17 4.78 86.30 0.41 2.58 16 9 C -0.12 -5.25 4.29 30.60 0.13 -5.12 16 10 C 0.03 1.74 4.97 29.85 0.15 1.89 16 11 C -0.55 -32.41 9.11 25.60 0.23 -32.18 16 12 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 13 C 0.00 0.19 5.46 84.66 0.46 0.65 16 14 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 15 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 C 0.09 2.71 1.26 44.94 0.06 2.76 16 20 H 0.02 0.89 6.20 -2.38 -0.01 0.87 16 21 C 0.07 1.89 5.73 86.30 0.49 2.38 16 22 N -0.84 -20.44 9.06 -186.71 -1.69 -22.14 16 23 C -0.09 -2.14 4.97 30.65 0.15 -1.99 16 24 H 0.05 0.77 7.85 -2.39 -0.02 0.75 16 25 H 0.05 0.81 8.09 -2.39 -0.02 0.79 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 1.46 7.85 -2.38 -0.02 1.44 16 29 H 0.07 2.03 8.04 -2.39 -0.02 2.01 16 30 H 0.02 0.66 6.44 -2.39 -0.02 0.64 16 31 H 0.07 2.65 6.39 -2.39 -0.02 2.63 16 32 H 0.07 2.49 8.02 -2.39 -0.02 2.47 16 33 H 0.04 1.74 6.75 -2.39 -0.02 1.72 16 34 H 0.04 1.91 6.07 -2.39 -0.01 1.89 16 35 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.02 0.51 5.82 -2.39 -0.01 0.49 16 40 H 0.35 7.31 9.08 -89.70 -0.81 6.50 16 41 H 0.34 8.57 8.93 -89.69 -0.80 7.77 16 42 H 0.08 1.91 7.73 -2.39 -0.02 1.89 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -66.67 328.12 -1.45 -68.13 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -0.63 Total: 22.08 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 4.01 Total: -25.99 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -5.50 Total: -99.50 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -1.37 Total: -12.07 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -66.67 -1.45 -68.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165660999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.802 kcal (2) G-P(sol) polarization free energy of solvation -66.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds