Wall clock time and date at job start Mon Mar 30 2020 04:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 113.99970 * 2 1 4 4 C 1.52995 * 109.47801 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47880 * 187.03257 * 4 3 2 6 6 C 1.53008 * 109.46818 * 307.03621 * 4 3 2 7 7 C 1.52995 * 109.46773 * 186.38027 * 6 4 3 8 8 C 1.52999 * 109.47103 * 184.88264 * 7 6 4 9 9 N 1.46902 * 109.47388 * 180.02562 * 8 7 6 10 10 N 1.46905 * 109.47149 * 67.03001 * 4 3 2 11 11 C 1.46905 * 110.99989 * 305.07785 * 10 4 3 12 12 C 1.50701 * 109.46989 * 192.08170 * 11 10 4 13 13 H 1.08002 * 120.00071 * 5.09725 * 12 11 10 14 14 C 1.37876 * 119.99801 * 185.09978 * 12 11 10 15 15 N 1.31511 * 120.00061 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99712 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46811 * 59.99885 * 16 14 12 18 18 H 1.48494 * 109.46616 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47119 * 300.00067 * 16 14 12 20 20 C 1.46904 * 110.99591 * 69.02942 * 10 4 3 21 21 C 1.53000 * 117.49864 * 130.21088 * 20 10 4 22 22 C 1.52995 * 117.49958 * 61.54920 * 20 10 4 23 23 H 1.08996 * 109.47697 * 60.00324 * 1 2 3 24 24 H 1.09005 * 109.47119 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47292 * 299.99499 * 1 2 3 26 26 H 1.09002 * 109.47234 * 60.00013 * 3 2 1 27 27 H 1.09003 * 109.47037 * 300.00208 * 3 2 1 28 28 H 1.08997 * 109.46964 * 306.37857 * 6 4 3 29 29 H 1.09000 * 109.47098 * 66.38633 * 6 4 3 30 30 H 1.09001 * 109.47318 * 304.88053 * 7 6 4 31 31 H 1.09005 * 109.47512 * 64.88642 * 7 6 4 32 32 H 1.09001 * 109.46861 * 300.00068 * 8 7 6 33 33 H 1.08999 * 109.47285 * 59.99771 * 8 7 6 34 34 H 1.00900 * 110.99855 * 180.02562 * 9 8 7 35 35 H 1.00898 * 110.99566 * 303.95045 * 9 8 7 36 36 H 1.09001 * 109.46740 * 312.08430 * 11 10 4 37 37 H 1.09000 * 109.47051 * 72.08314 * 11 10 4 38 38 H 0.96998 * 120.00144 * 180.02562 * 15 14 12 39 39 H 1.09003 * 115.54753 * 275.88039 * 20 10 4 40 40 H 1.08994 * 117.49452 * 359.97438 * 21 20 10 41 41 H 1.09002 * 117.49746 * 145.01961 * 21 20 10 42 42 H 1.09002 * 117.49730 * 214.97758 * 22 20 10 43 43 H 1.09001 * 117.50033 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5353 1.1848 -0.0006 5 1 3.9781 2.1728 0.1252 6 6 3.9757 0.2782 1.1506 7 6 5.5024 0.2840 1.2489 8 6 5.9484 -0.7146 2.3188 9 7 7.4144 -0.7086 2.4137 10 7 3.9804 0.6076 -1.2761 11 6 3.3096 -0.6731 -1.5370 12 6 3.9935 -1.3742 -2.6823 13 1 4.8903 -0.9549 -3.1140 14 6 3.4742 -2.5508 -3.1791 15 7 2.3819 -3.0611 -2.6538 16 14 4.3216 -3.4195 -4.5993 17 1 5.7076 -3.7774 -4.2045 18 1 3.5710 -4.6538 -4.9432 19 1 4.3601 -2.5181 -5.7788 20 6 3.7662 1.5492 -2.3832 21 6 4.9430 1.8117 -3.3251 22 6 4.5068 2.8867 -2.3264 23 1 -0.3634 0.5137 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.5500 0.6446 2.0847 29 1 3.6274 -0.7381 0.9663 30 1 5.9296 0.0007 0.2869 31 1 5.8455 1.2829 1.5187 32 1 5.5213 -0.4313 3.2808 33 1 5.6055 -1.7135 2.0491 34 1 7.7340 -1.3610 3.1139 35 1 7.8354 -0.9050 1.5180 36 1 3.3609 -1.2982 -0.6455 37 1 2.2660 -0.4910 -1.7935 38 1 2.0168 -3.8891 -3.0031 39 1 2.7659 1.5458 -2.8163 40 1 5.8762 1.2861 -3.1230 41 1 4.7169 1.9814 -4.3778 42 1 3.9940 3.7632 -2.7225 43 1 5.1528 3.0682 -1.4673 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234698633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:33 Heat of formation + Delta-G solvation = -18.766509 kcal Electronic energy + Delta-G solvation = -20754.333208 eV Core-core repulsion = 17835.449076 eV Total energy + Delta-G solvation = -2918.884133 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.86155 -36.61101 -35.66699 -33.86664 -32.62258 -30.65681 -28.68401 -26.43240 -25.46501 -24.33109 -22.27789 -21.74244 -21.13143 -20.50553 -18.47286 -16.84194 -15.81475 -15.56874 -15.31339 -15.22170 -14.92333 -14.52176 -14.31978 -13.95146 -13.59399 -13.24667 -12.51846 -12.15470 -12.05769 -11.85739 -11.64386 -11.37121 -11.12390 -10.89733 -10.88400 -10.79211 -10.62143 -10.33121 -10.17719 -9.96365 -9.88193 -9.57519 -9.22426 -9.18768 -8.79648 -8.50461 -8.24505 -7.04016 -5.85370 -3.84779 3.39275 3.43269 3.46318 4.35224 4.50607 4.53999 4.77481 4.87949 5.31065 5.47985 5.50155 5.53998 5.58628 5.61597 5.68941 5.77589 5.78695 5.84709 5.91067 5.97025 6.04788 6.12588 6.16592 6.18526 6.35172 6.40911 6.44265 6.53145 6.65944 6.82750 6.95684 6.99707 7.32812 7.50259 7.60729 7.73112 7.79733 7.98112 8.33471 8.41041 8.76407 9.25236 9.76980 11.23988 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.008190 C = 0.007356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.376129 B = 3418.016141 C = 3805.265298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.032 3.968 4 C 0.091 3.909 5 H 0.079 0.921 6 C -0.104 4.104 7 C -0.108 4.108 8 C 0.060 3.940 9 N -0.855 5.855 10 N -0.500 5.500 11 C 0.201 3.799 12 C -0.500 4.500 13 H 0.059 0.941 14 C 0.054 3.946 15 N -0.896 5.896 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.291 1.291 19 H -0.280 1.280 20 C 0.042 3.958 21 C -0.155 4.155 22 C -0.197 4.197 23 H 0.032 0.968 24 H 0.083 0.917 25 H 0.027 0.973 26 H 0.035 0.965 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.334 0.666 35 H 0.341 0.659 36 H 0.036 0.964 37 H 0.016 0.984 38 H 0.257 0.743 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 8.442 6.793 10.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.274 6.274 3 C -0.047 4.047 4 C -0.018 4.018 5 H 0.097 0.903 6 C -0.142 4.142 7 C -0.146 4.146 8 C -0.071 4.071 9 N -0.383 5.383 10 N -0.224 5.224 11 C 0.076 3.924 12 C -0.540 4.540 13 H 0.077 0.923 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.717 3.283 17 H -0.205 1.205 18 H -0.216 1.216 19 H -0.205 1.205 20 C -0.068 4.068 21 C -0.193 4.193 22 C -0.234 4.234 23 H 0.051 0.949 24 H 0.102 0.898 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.054 0.946 37 H 0.034 0.966 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.562 8.773 7.027 11.349 hybrid contribution -0.900 -1.195 -1.237 1.941 sum 0.662 7.578 5.790 9.560 Atomic orbital electron populations 1.22622 0.82892 1.02424 0.98387 1.88317 1.18134 1.26121 1.94779 1.23298 0.96765 0.85778 0.98824 1.21799 0.89546 0.98112 0.92378 0.90331 1.21496 0.95067 1.01809 0.95846 1.21446 0.95751 0.98307 0.99071 1.21841 0.87437 0.98379 0.99421 1.58812 1.07787 1.59200 1.12510 1.62165 1.57898 1.04147 0.98193 1.19862 0.92750 0.83300 0.96439 1.21277 1.10419 1.06366 1.15895 0.92271 1.24927 0.95146 0.97515 0.96998 1.69979 1.21177 1.20481 1.42015 0.86731 0.79569 0.78896 0.83144 1.20479 1.21648 1.20549 1.22102 0.94653 0.93104 0.96897 1.22843 1.00378 1.01150 0.94905 1.23050 1.05241 0.92468 1.02680 0.94932 0.89824 0.95466 0.94657 0.94038 0.93169 0.90015 0.90209 0.92659 0.91997 0.95376 0.85504 0.84631 0.94592 0.96600 0.93378 0.90828 0.88592 0.89949 0.90059 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.36 -7.04 6.43 -35.23 -0.23 -7.27 16 3 C 0.03 0.55 5.24 37.15 0.19 0.75 16 4 C 0.09 1.59 2.22 -67.71 -0.15 1.44 16 5 H 0.08 1.25 6.95 -51.93 -0.36 0.89 16 6 C -0.10 -1.76 4.29 -26.73 -0.11 -1.88 16 7 C -0.11 -1.72 5.42 -26.73 -0.15 -1.87 16 8 C 0.06 0.87 6.79 -3.82 -0.03 0.84 16 9 N -0.85 -11.17 9.62 -10.37 -0.10 -11.27 16 10 N -0.50 -10.33 4.01 -220.13 -0.88 -11.21 16 11 C 0.20 5.09 3.07 -4.97 -0.02 5.07 16 12 C -0.50 -13.97 8.74 -34.44 -0.30 -14.27 16 13 H 0.06 1.65 7.26 -52.49 -0.38 1.27 16 14 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 16 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.04 0.81 3.67 -67.71 -0.25 0.56 16 21 C -0.15 -2.76 9.92 -26.69 -0.26 -3.02 16 22 C -0.20 -3.06 9.70 -26.69 -0.26 -3.32 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.72 7.08 -51.93 -0.37 0.35 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.65 5.67 -51.93 -0.29 1.36 16 30 H 0.08 1.47 7.67 -51.93 -0.40 1.08 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.33 3.66 9.08 -39.29 -0.36 3.30 16 35 H 0.34 4.40 8.99 -39.29 -0.35 4.05 16 36 H 0.04 1.00 5.58 -51.93 -0.29 0.71 16 37 H 0.02 0.45 6.17 -51.93 -0.32 0.13 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.07 1.53 7.74 -51.93 -0.40 1.13 16 40 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.09 1.36 7.61 -51.93 -0.40 0.97 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -29.96 337.40 -8.43 -38.39 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.70 Total: 7.87 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -0.31 Total: -12.58 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.25 Total: -48.47 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.23 Total: -7.27 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.96 -8.43 -38.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234698633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.619 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds