Wall clock time and date at job start Mon Mar 30 2020 04:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35633 * 116.99829 * 2 1 4 4 N 1.31789 * 119.57075 * 5.32156 * 3 2 1 5 5 C 1.33714 * 121.44648 * 180.02562 * 4 3 2 6 6 C 1.41279 * 119.77953 * 179.97438 * 5 4 3 7 7 H 1.08003 * 119.99866 * 171.35646 * 6 5 4 8 8 C 1.40019 * 120.00062 * 351.35903 * 6 5 4 9 9 N 1.30748 * 120.00199 * 187.13167 * 8 6 5 10 10 Si 1.86799 * 120.00306 * 7.13737 * 8 6 5 11 11 H 1.48496 * 109.47514 * 182.14397 * 10 8 6 12 12 H 1.48508 * 109.46839 * 302.13946 * 10 8 6 13 13 H 1.48496 * 109.47440 * 62.13697 * 10 8 6 14 14 C 1.40626 * 120.43786 * 0.27128 * 5 4 3 15 15 C 1.38244 * 119.11891 * 359.43688 * 14 5 4 16 16 C 1.38836 * 118.65243 * 0.54957 * 15 14 5 17 17 Br 1.89098 * 120.25817 * 179.70750 * 16 15 14 18 18 H 1.08999 * 109.46829 * 185.65277 * 1 2 3 19 19 H 1.09001 * 109.46760 * 305.65310 * 1 2 3 20 20 H 1.09002 * 109.47120 * 65.65067 * 1 2 3 21 21 H 0.97000 * 120.00021 * 354.89158 * 9 8 6 22 22 H 1.07995 * 120.43941 * 179.72417 * 14 5 4 23 23 H 1.07997 * 120.67513 * 180.28262 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 7 1.3231 2.3061 0.1063 5 6 1.8909 3.5167 0.1099 6 6 1.0833 4.6702 0.2251 7 1 1.5412 5.6378 0.3688 8 6 -0.3106 4.5590 0.1531 9 7 -1.0515 5.6358 0.1194 10 14 -1.1118 2.8722 0.1054 11 1 -2.5832 3.0265 -0.0219 12 1 -0.5916 2.1099 -1.0580 13 1 -0.7975 2.1392 1.3581 14 6 3.2860 3.6496 -0.0066 15 6 4.0636 2.5115 -0.1131 16 6 3.4353 1.2735 -0.1126 17 35 4.4542 -0.3123 -0.2642 18 1 -0.3633 -1.0227 0.1012 19 1 -0.3633 0.5990 0.8351 20 1 -0.3633 0.4237 -0.9363 21 1 -0.6420 6.5095 0.2188 22 1 3.7443 4.6275 -0.0082 23 1 5.1377 2.5842 -0.1991 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238378872.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:38 Heat of formation + Delta-G solvation = -14.331222 kcal Electronic energy + Delta-G solvation = -12048.779523 eV Core-core repulsion = 9715.318158 eV Total energy + Delta-G solvation = -2333.461365 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.48650 -37.06636 -34.01564 -31.94148 -30.35266 -29.03631 -27.22131 -24.88864 -22.13434 -21.20686 -18.71649 -17.56368 -15.79413 -15.41385 -14.79306 -14.23019 -13.56409 -13.44542 -12.74054 -12.61907 -12.11418 -11.65629 -11.43022 -11.01678 -10.47424 -10.09286 -9.91136 -9.80820 -9.43774 -9.36532 -8.59170 -8.00259 -7.56614 -7.51445 -5.09158 2.20912 2.43914 2.72138 3.34805 3.40127 3.78346 3.84300 4.17297 4.34496 5.20962 5.54577 5.73517 5.83838 5.86025 6.15090 6.17496 6.35055 6.89360 6.95894 7.17538 7.27910 7.59818 7.85114 8.11092 8.37262 9.08599 9.72069 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.040529 B = 0.009357 C = 0.007640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.703802 B = 2991.686338 C = 3664.146626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.306 6.306 3 C 0.397 3.603 4 N -0.617 5.617 5 C 0.277 3.723 6 C -0.450 4.450 7 H 0.089 0.911 8 C 0.037 3.963 9 N -0.787 5.787 10 Si 1.154 2.846 11 H -0.328 1.328 12 H -0.277 1.277 13 H -0.285 1.285 14 C -0.279 4.279 15 C 0.005 3.995 16 C -0.292 4.292 17 Br -0.087 7.087 18 H 0.088 0.912 19 H 0.070 0.930 20 H 0.065 0.935 21 H 0.287 0.713 22 H 0.115 0.885 23 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 -7.781 -0.470 9.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.213 6.213 3 C 0.212 3.788 4 N -0.353 5.353 5 C 0.155 3.845 6 C -0.481 4.481 7 H 0.107 0.893 8 C -0.186 4.186 9 N -0.407 5.407 10 Si 0.990 3.010 11 H -0.262 1.262 12 H -0.206 1.206 13 H -0.214 1.214 14 C -0.301 4.301 15 C -0.020 4.020 16 C -0.375 4.375 17 Br -0.005 7.005 18 H 0.106 0.894 19 H 0.088 0.912 20 H 0.084 0.916 21 H 0.098 0.902 22 H 0.133 0.867 23 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.377 -9.219 -0.600 9.836 hybrid contribution 2.066 1.615 0.175 2.628 sum 5.443 -7.604 -0.426 9.361 Atomic orbital electron populations 1.23722 0.78915 1.02737 1.03384 1.86209 1.21630 1.25512 1.87924 1.19252 0.87691 0.84258 0.87637 1.66303 1.36960 0.98703 1.33297 1.18273 0.90553 0.88860 0.86767 1.20935 0.93518 0.94036 1.39573 0.89273 1.28012 0.94781 1.07085 0.88690 1.70662 1.40917 1.00548 1.28591 0.82332 0.69953 0.69446 0.79277 1.26193 1.20607 1.21435 1.21516 0.94141 0.97334 1.17151 1.20699 0.98430 0.90201 0.92630 1.20543 0.90388 0.91337 1.35271 1.96341 1.71284 1.34627 1.98214 0.89396 0.91199 0.91641 0.90158 0.86715 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.16 101.05 0.93 1.06 14 2 O -0.31 -6.54 9.82 -18.60 -0.18 -6.72 14 3 C 0.40 9.26 7.49 -17.04 -0.13 9.13 14 4 N -0.62 -15.26 3.99 -11.16 -0.04 -15.31 14 5 C 0.28 6.90 6.42 -84.99 -0.55 6.36 14 6 C -0.45 -11.51 9.56 -37.76 -0.36 -11.87 14 7 H 0.09 2.24 8.06 -52.48 -0.42 1.82 14 8 C 0.04 0.96 5.52 -17.35 -0.10 0.86 14 9 N -0.79 -20.20 13.65 55.55 0.76 -19.44 14 10 Si 1.15 26.61 22.31 -169.99 -3.79 22.82 14 11 H -0.33 -7.49 7.11 56.52 0.40 -7.09 14 12 H -0.28 -6.30 4.82 56.52 0.27 -6.03 14 13 H -0.29 -6.47 5.74 56.52 0.32 -6.14 14 14 C -0.28 -6.24 9.83 -38.68 -0.38 -6.62 14 15 C 0.00 0.10 9.91 -39.36 -0.39 -0.29 14 16 C -0.29 -6.35 6.29 -38.83 -0.24 -6.59 14 17 Br -0.09 -1.61 33.18 -68.01 -2.26 -3.87 14 18 H 0.09 1.24 8.14 -51.93 -0.42 0.81 14 19 H 0.07 1.36 4.61 -51.93 -0.24 1.12 14 20 H 0.07 1.21 5.89 -51.93 -0.31 0.91 14 21 H 0.29 6.98 8.72 -40.82 -0.36 6.63 14 22 H 0.11 2.34 8.06 -52.49 -0.42 1.92 14 23 H 0.12 2.10 8.06 -52.49 -0.42 1.67 14 LS Contribution 216.33 15.07 3.26 3.26 Total: -1.00 -26.53 216.33 -5.07 -31.61 By element: Atomic # 1 Polarization: -2.79 SS G_CDS: -1.59 Total: -4.38 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.22 Total: -7.97 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.71 Total: -34.75 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.18 Total: -6.72 kcal Atomic # 14 Polarization: 26.61 SS G_CDS: -3.79 Total: 22.82 kcal Atomic # 35 Polarization: -1.61 SS G_CDS: -2.26 Total: -3.87 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -26.53 -5.07 -31.61 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238378872.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.274 kcal (2) G-P(sol) polarization free energy of solvation -26.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds