Wall clock time and date at job start Mon Mar 30 2020 04:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00016 * 2 1 4 4 H 1.48500 * 109.47134 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47326 * 300.00354 * 3 2 1 6 6 H 1.48496 * 109.47090 * 60.00662 * 3 2 1 7 7 C 1.37876 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99618 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00139 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47125 * 300.00291 * 9 7 2 11 11 N 1.46898 * 109.47240 * 60.00291 * 9 7 2 12 12 C 1.50705 * 109.47132 * 180.02562 * 9 7 2 13 13 N 1.31885 * 119.59744 * 250.85379 * 12 9 7 14 14 C 1.31846 * 121.73319 * 179.97438 * 13 12 9 15 15 C 1.38350 * 120.74849 * 0.02758 * 14 13 12 16 16 Cl 1.73600 * 120.43413 * 179.97438 * 15 14 13 17 17 C 1.38739 * 119.12980 * 359.97438 * 15 14 13 18 18 C 1.38180 * 119.60582 * 70.85758 * 12 9 7 19 19 N 1.48019 * 120.40905 * 0.02562 * 18 12 9 20 20 O 1.21804 * 120.00339 * 217.65966 * 19 18 12 21 21 O 1.21799 * 120.00197 * 37.66652 * 19 18 12 22 22 H 0.97006 * 119.99841 * 359.97438 * 1 2 3 23 23 H 1.00900 * 111.00024 * 296.04540 * 11 9 7 24 24 H 1.00904 * 111.00030 * 59.99738 * 11 9 7 25 25 H 1.08002 * 119.62413 * 180.02562 * 14 13 12 26 26 H 1.08002 * 120.78930 * 179.72641 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5570 0.8896 11 7 0.4060 -2.5767 -1.1997 12 6 2.2303 -3.6446 -0.0005 13 7 2.3677 -4.3841 -1.0839 14 6 3.2120 -5.3957 -1.1304 15 6 3.9897 -5.7191 -0.0329 16 17 5.0983 -7.0532 -0.1030 17 6 3.8721 -4.9631 1.1245 18 6 2.9733 -3.9075 1.1344 19 7 2.8118 -3.0723 2.3458 20 8 3.7821 -2.7935 3.0273 21 8 1.7085 -2.6639 2.6613 22 1 -0.4850 0.8401 0.0004 23 1 -0.3013 -1.8572 -1.1908 24 1 0.9637 -2.5251 -2.0390 25 1 3.2974 -5.9786 -2.0357 26 1 4.4629 -5.1946 1.9984 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238599953.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:23 Heat of formation + Delta-G solvation = 29.484670 kcal Electronic energy + Delta-G solvation = -17016.767772 eV Core-core repulsion = 13931.926843 eV Total energy + Delta-G solvation = -3084.840929 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.035 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.72017 -40.09677 -36.93279 -35.98418 -34.88866 -32.94186 -31.98603 -30.23272 -26.53462 -26.32610 -24.18447 -22.64355 -21.04622 -18.90292 -18.23700 -17.38622 -16.73801 -16.66753 -16.01419 -15.29056 -14.52760 -14.37882 -13.99475 -13.29418 -12.91395 -12.45042 -12.13978 -11.55855 -11.46952 -11.11643 -11.08719 -10.94014 -10.73228 -10.46089 -10.25497 -10.15346 -10.01295 -9.55717 -9.06158 -8.68345 -7.34827 -6.27133 -4.47231 0.26380 0.85251 1.56366 1.59776 2.06736 3.15831 3.24827 3.28202 3.50174 4.18645 4.33289 4.40312 4.43375 4.76492 4.99804 5.02241 5.51722 5.66370 6.11832 6.57481 6.86109 7.26355 7.50247 7.73701 7.79055 8.24588 8.43879 8.72130 9.01116 9.27581 10.71464 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.026686 B = 0.007267 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.979353 B = 3852.181061 C = 4251.872758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.082 3.918 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.561 4.561 8 H 0.049 0.951 9 C 0.232 3.768 10 H 0.096 0.904 11 N -0.838 5.838 12 C 0.248 3.752 13 N -0.438 5.438 14 C 0.157 3.843 15 C -0.120 4.120 16 Cl -0.048 7.048 17 C -0.012 4.012 18 C -0.086 4.086 19 N 0.042 4.958 20 O -0.185 6.185 21 O -0.100 6.100 22 H 0.270 0.730 23 H 0.359 0.641 24 H 0.322 0.678 25 H 0.176 0.824 26 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.447 -10.458 -0.849 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.123 4.123 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.600 4.600 8 H 0.068 0.932 9 C 0.121 3.879 10 H 0.113 0.887 11 N -0.368 5.368 12 C 0.110 3.890 13 N -0.147 5.147 14 C -0.003 4.003 15 C -0.150 4.150 16 Cl -0.019 7.019 17 C -0.039 4.039 18 C -0.172 4.172 19 N 0.567 4.433 20 O -0.394 6.394 21 O -0.331 6.331 22 H 0.081 0.919 23 H 0.176 0.824 24 H 0.131 0.869 25 H 0.193 0.807 26 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.818 -11.398 -1.892 12.936 hybrid contribution 1.658 1.673 0.826 2.496 sum 7.476 -9.724 -1.066 12.312 Atomic orbital electron populations 1.69721 1.05799 1.27750 1.48095 1.24870 0.94994 0.99286 0.93182 0.86366 0.80012 0.82707 0.78012 1.19798 1.20633 1.20195 1.21466 0.92925 0.90292 1.55354 0.93246 1.18607 0.89060 0.85356 0.94862 0.88658 1.59279 1.18024 1.55976 1.03544 1.22596 0.89839 0.92302 0.84215 1.68310 1.16893 1.04371 1.25123 1.23421 0.87791 0.92395 0.96707 1.21758 1.00541 0.96116 0.96608 1.98375 1.60923 1.44172 1.98448 1.21129 0.93397 0.90806 0.98613 1.21909 1.06482 0.98899 0.89902 1.43003 1.00533 0.99209 1.00528 1.94478 1.31592 1.62056 1.51236 1.94572 1.12268 1.52948 1.73291 0.91943 0.82380 0.86852 0.80717 0.82287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.27 11.54 55.43 0.64 -22.63 15 2 C 0.08 2.16 5.38 -17.82 -0.10 2.06 15 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 15 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.56 -14.73 7.91 -34.44 -0.27 -15.01 15 8 H 0.05 1.35 7.74 -52.49 -0.41 0.95 15 9 C 0.23 5.63 2.28 -70.02 -0.16 5.47 15 10 H 0.10 2.53 6.14 -51.93 -0.32 2.21 15 11 N -0.84 -19.47 8.81 -6.65 -0.06 -19.53 15 12 C 0.25 5.22 5.98 -82.59 -0.49 4.73 15 13 N -0.44 -8.11 9.27 -9.44 -0.09 -8.20 15 14 C 0.16 2.24 10.99 -17.50 -0.19 2.05 15 15 C -0.12 -1.64 6.34 -39.36 -0.25 -1.89 15 16 Cl -0.05 -0.52 28.99 -51.86 -1.50 -2.02 15 17 C -0.01 -0.19 9.62 -39.25 -0.38 -0.57 15 18 C -0.09 -1.69 6.37 -79.82 -0.51 -2.20 15 19 N 0.04 0.90 3.98 34.03 0.14 1.04 15 20 O -0.19 -3.90 19.00 -29.46 -0.56 -4.46 15 21 O -0.10 -2.32 16.09 -29.46 -0.47 -2.79 15 22 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 23 H 0.36 8.83 7.08 -39.29 -0.28 8.55 15 24 H 0.32 7.29 8.57 -39.29 -0.34 6.95 15 25 H 0.18 1.83 8.06 -52.49 -0.42 1.41 15 26 H 0.16 2.09 8.06 -52.49 -0.42 1.67 15 LS Contribution 257.37 15.07 3.88 3.88 Total: -1.00 -27.26 257.37 -6.72 -33.98 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -1.32 Total: 10.24 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -2.35 Total: -5.35 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.63 Total: -49.33 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -1.03 Total: -7.26 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.26 -6.72 -33.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238599953.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.466 kcal (2) G-P(sol) polarization free energy of solvation -27.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds