Wall clock time and date at job start Mon Mar 30 2020 04:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00016 * 2 1 4 4 H 1.48500 * 109.47134 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47326 * 300.00354 * 3 2 1 6 6 H 1.48496 * 109.47090 * 60.00662 * 3 2 1 7 7 C 1.37876 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99618 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00139 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47125 * 300.00291 * 9 7 2 11 11 N 1.46898 * 109.47240 * 60.00291 * 9 7 2 12 12 C 1.50705 * 109.47132 * 180.02562 * 9 7 2 13 13 N 1.31885 * 119.59744 * 250.85379 * 12 9 7 14 14 C 1.31846 * 121.73319 * 179.97438 * 13 12 9 15 15 C 1.38350 * 120.74849 * 0.02758 * 14 13 12 16 16 Cl 1.73600 * 120.43413 * 179.97438 * 15 14 13 17 17 C 1.38739 * 119.12980 * 359.97438 * 15 14 13 18 18 C 1.38180 * 119.60582 * 70.85758 * 12 9 7 19 19 N 1.48019 * 120.40905 * 0.02562 * 18 12 9 20 20 O 1.21804 * 120.00339 * 217.65966 * 19 18 12 21 21 O 1.21799 * 120.00197 * 37.66652 * 19 18 12 22 22 H 0.97006 * 119.99841 * 359.97438 * 1 2 3 23 23 H 1.00900 * 111.00024 * 296.04540 * 11 9 7 24 24 H 1.00904 * 111.00030 * 59.99738 * 11 9 7 25 25 H 1.08002 * 119.62413 * 180.02562 * 14 13 12 26 26 H 1.08002 * 120.78930 * 179.72641 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5570 0.8896 11 7 0.4060 -2.5767 -1.1997 12 6 2.2303 -3.6446 -0.0005 13 7 2.3677 -4.3841 -1.0839 14 6 3.2120 -5.3957 -1.1304 15 6 3.9897 -5.7191 -0.0329 16 17 5.0983 -7.0532 -0.1030 17 6 3.8721 -4.9631 1.1245 18 6 2.9733 -3.9075 1.1344 19 7 2.8118 -3.0723 2.3458 20 8 3.7821 -2.7935 3.0273 21 8 1.7085 -2.6639 2.6613 22 1 -0.4850 0.8401 0.0004 23 1 -0.3013 -1.8572 -1.1908 24 1 0.9637 -2.5251 -2.0390 25 1 3.2974 -5.9786 -2.0357 26 1 4.4629 -5.1946 1.9984 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238599953.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:22 Heat of formation + Delta-G solvation = 11.211252 kcal Electronic energy + Delta-G solvation = -17017.560167 eV Core-core repulsion = 13931.926843 eV Total energy + Delta-G solvation = -3085.633324 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.035 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.30745 -41.51488 -38.06392 -37.60599 -36.65634 -34.32745 -33.75807 -31.83489 -28.34894 -27.90743 -25.79893 -24.10903 -22.70502 -20.42719 -19.84249 -19.02497 -18.61696 -18.05332 -17.46899 -16.87274 -16.24965 -15.78128 -15.50684 -14.78940 -14.44629 -14.15544 -13.59268 -13.20262 -12.94742 -12.87129 -12.66930 -12.55473 -12.46972 -12.18102 -12.00409 -11.79472 -11.60029 -10.94642 -10.82486 -10.21447 -9.26909 -8.24546 -6.51592 -1.19432 -0.45401 0.01438 0.24119 0.78096 1.31003 1.35212 1.43653 2.11506 2.31370 2.92518 2.95687 3.11314 3.25151 3.49816 3.67059 4.23451 4.30788 4.59950 4.84893 5.16526 5.43074 5.46083 5.79023 6.31784 6.51936 6.54213 6.81761 7.07026 7.27155 8.72160 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.026686 B = 0.007267 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.979353 B = 3852.181061 C = 4251.872758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.041 3.959 3 Si 0.955 3.045 4 H -0.279 1.279 5 H -0.269 1.269 6 H -0.276 1.276 7 C -0.568 4.568 8 H 0.032 0.968 9 C 0.235 3.765 10 H 0.062 0.938 11 N -0.828 5.828 12 C 0.224 3.776 13 N -0.455 5.455 14 C 0.167 3.833 15 C -0.100 4.100 16 Cl -0.008 7.008 17 C -0.005 4.005 18 C -0.104 4.104 19 N 0.044 4.956 20 O -0.162 6.162 21 O -0.163 6.163 22 H 0.273 0.727 23 H 0.349 0.651 24 H 0.325 0.675 25 H 0.220 0.780 26 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.540 -12.162 -1.755 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.163 4.163 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.194 1.194 6 H -0.201 1.201 7 C -0.608 4.608 8 H 0.050 0.950 9 C 0.124 3.876 10 H 0.080 0.920 11 N -0.357 5.357 12 C 0.087 3.913 13 N -0.165 5.165 14 C 0.008 3.992 15 C -0.130 4.130 16 Cl 0.021 6.979 17 C -0.032 4.032 18 C -0.190 4.190 19 N 0.565 4.435 20 O -0.380 6.380 21 O -0.379 6.379 22 H 0.083 0.917 23 H 0.165 0.835 24 H 0.135 0.865 25 H 0.237 0.763 26 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 7.794 -13.100 -2.808 15.500 hybrid contribution 1.227 1.974 1.065 2.557 sum 9.022 -11.126 -1.743 14.430 Atomic orbital electron populations 1.69795 1.06610 1.28452 1.48505 1.25534 0.95771 1.01885 0.93081 0.85560 0.78443 0.79658 0.78315 1.20419 1.19363 1.20120 1.21562 0.92086 0.91889 1.55276 0.94985 1.18237 0.89295 0.86418 0.93677 0.92023 1.59253 1.17677 1.55244 1.03533 1.22035 0.90526 0.92831 0.85952 1.68229 1.18497 1.05525 1.24220 1.24117 0.85936 0.90835 0.98347 1.21814 0.99843 0.95996 0.95338 1.98407 1.59317 1.41898 1.98293 1.21440 0.92207 0.89308 1.00250 1.21958 1.08318 1.00252 0.88466 1.43322 1.00092 0.99047 1.01022 1.94417 1.31256 1.60881 1.51433 1.94591 1.12851 1.55625 1.74864 0.91689 0.83541 0.86519 0.76327 0.79702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.82 11.54 21.45 0.25 -48.57 15 2 C 0.04 2.18 5.38 84.65 0.46 2.63 15 3 Si 0.96 43.35 29.54 68.60 2.03 45.38 15 4 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 6 H -0.28 -12.39 7.11 99.48 0.71 -11.69 15 7 C -0.57 -30.74 7.91 25.60 0.20 -30.53 15 8 H 0.03 1.80 7.74 -2.91 -0.02 1.77 15 9 C 0.24 11.80 2.28 43.42 0.10 11.90 15 10 H 0.06 3.49 6.14 -2.39 -0.01 3.48 15 11 N -0.83 -39.50 8.81 -174.96 -1.54 -41.04 15 12 C 0.22 9.48 5.98 42.54 0.25 9.73 15 13 N -0.46 -16.23 9.27 -183.79 -1.70 -17.93 15 14 C 0.17 4.18 10.99 84.72 0.93 5.11 15 15 C -0.10 -2.34 6.34 22.42 0.14 -2.20 15 16 Cl -0.01 -0.14 28.99 -2.72 -0.08 -0.22 15 17 C -0.01 -0.15 9.62 22.49 0.22 0.07 15 18 C -0.10 -4.03 6.37 36.46 0.23 -3.80 15 19 N 0.04 1.93 3.98 -46.26 -0.18 1.74 15 20 O -0.16 -6.75 19.00 18.88 0.36 -6.39 15 21 O -0.16 -7.99 16.09 18.89 0.30 -7.68 15 22 H 0.27 14.05 8.31 -92.70 -0.77 13.28 15 23 H 0.35 17.74 7.08 -89.69 -0.63 17.11 15 24 H 0.32 14.91 8.57 -89.69 -0.77 14.14 15 25 H 0.22 3.44 8.06 -2.91 -0.02 3.42 15 26 H 0.19 4.20 8.06 -2.91 -0.02 4.17 15 Total: -1.00 -60.94 257.37 1.82 -59.12 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -0.14 Total: 22.68 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 2.53 Total: -7.09 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -3.18 Total: -105.80 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.66 Total: -14.07 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -60.94 1.82 -59.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238599953.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.326 kcal (2) G-P(sol) polarization free energy of solvation -60.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds