Wall clock time and date at job start Mon Mar 30 2020 04:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46908 * 109.47151 * 2 1 4 4 C 1.46894 * 110.99742 * 294.97137 * 3 2 1 5 5 C 1.50703 * 109.46871 * 296.41542 * 4 3 2 6 6 H 1.07997 * 120.00424 * 4.17371 * 5 4 3 7 7 C 1.37881 * 119.99901 * 184.17095 * 5 4 3 8 8 N 1.31510 * 119.99957 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00143 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47265 * 89.99759 * 9 7 5 11 11 H 1.48495 * 109.47159 * 210.00141 * 9 7 5 12 12 H 1.48502 * 109.46801 * 330.00068 * 9 7 5 13 13 C 1.46906 * 110.99799 * 58.92101 * 3 2 1 14 14 H 1.08999 * 109.46962 * 300.33769 * 13 3 2 15 15 C 1.53004 * 109.46758 * 180.33918 * 13 3 2 16 16 C 1.53001 * 109.47082 * 60.34337 * 13 3 2 17 17 C 1.52997 * 109.47133 * 65.02710 * 16 13 3 18 18 H 1.08996 * 109.50982 * 56.08368 * 17 16 13 19 19 C 1.53096 * 109.54054 * 176.19578 * 17 16 13 20 20 O 1.43014 * 109.25925 * 176.80564 * 19 17 16 21 21 C 1.43025 * 113.77708 * 301.35143 * 20 19 17 22 22 C 1.53092 * 109.25329 * 58.60095 * 21 20 19 23 23 N 1.47012 * 109.50669 * 295.99476 * 17 16 13 24 24 H 1.08999 * 109.47146 * 301.81032 * 1 2 3 25 25 H 1.09005 * 109.46772 * 61.80567 * 1 2 3 26 26 H 1.08995 * 109.47254 * 181.81128 * 1 2 3 27 27 H 1.08995 * 109.47530 * 239.99992 * 2 1 3 28 28 H 1.09006 * 109.47023 * 119.99617 * 2 1 3 29 29 H 1.08992 * 109.47915 * 56.41595 * 4 3 2 30 30 H 1.09004 * 109.46976 * 176.42071 * 4 3 2 31 31 H 0.97000 * 120.00147 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47036 * 300.00170 * 15 13 3 33 33 H 1.09005 * 109.46982 * 60.00048 * 15 13 3 34 34 H 1.08993 * 109.47109 * 179.97438 * 15 13 3 35 35 H 1.09000 * 109.46776 * 305.02693 * 16 13 3 36 36 H 1.08996 * 109.47009 * 185.03213 * 16 13 3 37 37 H 1.09008 * 109.50581 * 296.73916 * 19 17 16 38 38 H 1.09002 * 109.51207 * 56.87200 * 19 17 16 39 39 H 1.08998 * 109.46801 * 298.69350 * 21 20 19 40 40 H 1.09000 * 109.54559 * 178.56123 * 21 20 19 41 41 H 1.09004 * 109.50903 * 183.26091 * 22 21 20 42 42 H 1.09005 * 109.50892 * 63.17985 * 22 21 20 43 43 H 1.00896 * 111.00755 * 305.18566 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6493 2.0743 -1.2432 5 6 2.3234 1.4009 -2.4108 6 1 2.9083 0.5067 -2.2545 7 6 2.1932 1.9266 -3.6789 8 7 2.7810 1.3387 -4.6979 9 14 1.1820 3.4737 -3.9494 10 1 2.0561 4.6665 -3.8138 11 1 0.5898 3.4463 -5.3108 12 1 0.0961 3.5384 -2.9384 13 6 1.5276 2.1174 1.1746 14 1 0.4377 2.1268 1.1666 15 6 2.0505 3.5548 1.1352 16 6 2.0224 1.4295 2.4486 17 6 3.5476 1.5268 2.5213 18 1 3.8486 2.5729 2.4658 19 6 4.0369 0.9232 3.8404 20 8 5.4665 0.9495 3.8696 21 6 6.0785 0.2368 2.7911 22 6 5.6090 0.8327 1.4614 23 7 4.1408 0.7851 1.3992 24 1 -0.3633 0.5417 0.8733 25 1 -0.3633 0.4856 -0.9058 26 1 -0.3633 -1.0271 0.0325 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.5681 2.0319 -1.3740 30 1 1.9683 3.1153 -1.1904 31 1 2.6892 1.7083 -5.5900 32 1 3.1404 3.5453 1.1432 33 1 1.6980 4.0448 0.2276 34 1 1.6851 4.0983 2.0065 35 1 1.7255 0.3808 2.4339 36 1 1.5852 1.9187 3.3189 37 1 3.6451 1.5054 4.6745 38 1 3.6902 -0.1071 3.9201 39 1 5.7916 -0.8136 2.8407 40 1 7.1625 0.3226 2.8659 41 1 6.0272 0.2562 0.6362 42 1 5.9430 1.8677 1.3882 43 1 3.8105 -0.1681 1.3807 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252963660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:05 Heat of formation + Delta-G solvation = -45.286770 kcal Electronic energy + Delta-G solvation = -21103.123854 eV Core-core repulsion = 18183.089717 eV Total energy + Delta-G solvation = -2920.034137 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 256.189 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.80610 -39.25172 -35.83852 -34.61195 -33.77868 -32.04054 -30.85243 -28.19323 -27.84614 -26.56211 -24.24447 -24.17045 -22.62212 -21.82331 -19.45378 -18.83422 -17.31303 -16.98964 -16.82651 -16.40874 -16.31238 -15.96341 -15.59202 -15.43065 -15.04707 -14.53447 -14.38124 -13.61465 -13.44842 -13.33891 -13.25010 -13.04236 -12.79144 -12.60736 -12.55657 -12.32449 -12.22362 -12.05387 -11.89564 -11.73046 -11.70385 -11.27815 -11.09917 -11.04235 -10.91070 -10.65046 -8.80514 -8.36315 -8.18805 -6.16872 1.34875 1.35305 1.45746 2.39195 2.94568 3.14881 3.36196 3.54419 3.78799 4.04128 4.16290 4.22490 4.28026 4.37986 4.38362 4.47861 4.59017 4.66117 4.70326 4.76138 4.76861 4.79519 4.87468 4.89570 4.96929 5.01121 5.14933 5.19919 5.23427 5.25272 5.29171 5.43283 5.55564 5.59189 5.75052 6.19068 6.21268 6.36985 6.70928 6.73253 6.90720 6.98953 7.45402 8.97807 Molecular weight = 256.19amu Principal moments of inertia in cm(-1) A = 0.024115 B = 0.006574 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.817946 B = 4258.234624 C = 4585.524050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.068 3.932 3 N -0.489 5.489 4 C 0.168 3.832 5 C -0.489 4.489 6 H 0.042 0.958 7 C 0.004 3.996 8 N -0.953 5.953 9 Si 0.937 3.063 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.255 1.255 13 C 0.080 3.920 14 H 0.030 0.970 15 C -0.143 4.143 16 C -0.097 4.097 17 C 0.068 3.932 18 H 0.076 0.924 19 C 0.026 3.974 20 O -0.403 6.403 21 C 0.025 3.975 22 C 0.027 3.973 23 N -0.652 5.652 24 H 0.064 0.936 25 H 0.030 0.970 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.081 0.919 29 H -0.024 1.024 30 H 0.023 0.977 31 H 0.261 0.739 32 H 0.057 0.943 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 -0.570 18.682 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.060 4.060 3 N -0.212 5.212 4 C 0.041 3.959 5 C -0.527 4.527 6 H 0.060 0.940 7 C -0.192 4.192 8 N -0.596 5.596 9 Si 0.762 3.238 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.179 1.179 13 C -0.029 4.029 14 H 0.047 0.953 15 C -0.201 4.201 16 C -0.135 4.135 17 C -0.042 4.042 18 H 0.094 0.906 19 C -0.053 4.053 20 O -0.322 6.322 21 C -0.053 4.053 22 C -0.103 4.103 23 N -0.282 5.282 24 H 0.082 0.918 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.100 0.900 29 H -0.006 1.006 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.118 0.067 18.219 18.220 hybrid contribution -1.010 -0.149 -0.597 1.182 sum -1.127 -0.082 17.622 17.658 Atomic orbital electron populations 1.22357 0.99165 1.01944 1.00823 1.21924 0.91906 0.91290 1.00904 1.62132 1.57884 1.00954 1.00198 1.19951 0.92369 0.94634 0.88940 1.21312 1.29264 1.10966 0.91207 0.93974 1.25738 0.97071 1.00355 0.96001 1.70050 1.46853 1.42620 1.00047 0.85864 0.79905 0.80519 0.77509 1.19601 1.21224 1.17948 1.21586 0.95699 0.94065 0.91508 0.95262 1.21925 1.01771 0.95509 1.00865 1.21620 0.93792 1.01373 0.96703 1.22104 0.94919 0.98893 0.88277 0.90563 1.23462 0.80834 1.01127 0.99840 1.87987 1.20147 1.75715 1.48340 1.23353 0.99236 0.94999 0.87715 1.22567 0.89739 1.01536 0.96502 1.60779 1.04478 1.19003 1.43956 0.91755 0.95112 0.91644 0.93734 0.90045 1.00639 0.95883 0.92962 0.92411 0.94768 0.90700 0.91103 0.88935 0.87332 0.92701 0.92701 0.87662 0.90338 0.91889 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.90 9.23 71.98 0.66 -5.24 16 2 C 0.07 2.40 4.92 86.30 0.42 2.82 16 3 N -0.49 -18.59 2.89 -875.49 -2.53 -21.12 16 4 C 0.17 8.00 3.29 85.56 0.28 8.28 16 5 C -0.49 -28.19 9.07 25.60 0.23 -27.95 16 6 H 0.04 2.70 7.04 -2.91 -0.02 2.68 16 7 C 0.00 0.25 5.47 84.66 0.46 0.71 16 8 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 9 Si 0.94 45.58 27.39 68.60 1.88 47.46 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.26 -11.72 6.66 99.48 0.66 -11.06 16 13 C 0.08 2.40 1.97 44.92 0.09 2.48 16 14 H 0.03 0.89 6.22 -2.39 -0.01 0.88 16 15 C -0.14 -4.29 8.36 71.98 0.60 -3.69 16 16 C -0.10 -2.16 4.50 30.59 0.14 -2.02 16 17 C 0.07 1.64 2.27 44.93 0.10 1.75 16 18 H 0.08 2.08 6.12 -2.39 -0.01 2.06 16 19 C 0.03 0.53 6.29 72.01 0.45 0.98 16 20 O -0.40 -9.98 10.82 -148.98 -1.61 -11.60 16 21 C 0.03 0.56 7.01 72.01 0.50 1.06 16 22 C 0.03 0.71 6.76 86.31 0.58 1.30 16 23 N -0.65 -18.65 4.54 -490.71 -2.23 -20.87 16 24 H 0.06 1.79 6.28 -2.39 -0.01 1.78 16 25 H 0.03 1.16 6.54 -2.38 -0.02 1.15 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.04 1.92 6.48 -2.39 -0.02 1.91 16 28 H 0.08 2.34 5.00 -2.38 -0.01 2.33 16 29 H -0.02 -1.16 5.66 -2.39 -0.01 -1.17 16 30 H 0.02 1.12 5.01 -2.38 -0.01 1.11 16 31 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 32 H 0.06 1.86 6.26 -2.39 -0.01 1.84 16 33 H 0.03 1.16 6.18 -2.38 -0.01 1.14 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.50 6.18 -2.39 -0.01 1.48 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 40 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.34 9.24 7.18 -89.70 -0.64 8.60 16 Total: -1.00 -67.21 311.35 0.66 -66.55 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.31 Total: 19.43 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 4.54 Total: -19.52 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -4.46 Total: -102.32 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -1.61 Total: -11.60 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.88 Total: 47.46 kcal Total: -67.21 0.66 -66.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252963660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.263 kcal (2) G-P(sol) polarization free energy of solvation -67.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds